RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 IMPACTQ9P2X3 320 aa20.01■□□□□ 0.79
SYNE3-204ENST00000555759 RBM8AQ9Y5S9 174 aaKnown RBP20.01■□□□□ 0.79
SYNE3-204ENST00000555759 CCDC61Q9Y6R9 512 aa20.01■□□□□ 0.79
SYNE3-204ENST00000555759 CCDC50Q8IVM0 306 aa20.01■□□□□ 0.79
SYNE3-204ENST00000555759 LRP2BPQ9P2M1 347 aa20.01■□□□□ 0.79
SYNE3-204ENST00000555759 PIK3R4Q99570 1358 aa20.01■□□□□ 0.79
SYNE3-204ENST00000555759 IFIT3O14879 490 aaKnown RBP20.01■□□□□ 0.79
SYNE3-204ENST00000555759 VAV2P52735 878 aa20.01■□□□□ 0.79
SYNE3-204ENST00000555759 MRPL50Q8N5N7 158 aaKnown RBP20.01■□□□□ 0.79
SYNE3-204ENST00000555759 A0A087WZG4 1122 aa20.01■□□□□ 0.79
SYNE3-204ENST00000555759 PHACTR2O75167 634 aa20.01■□□□□ 0.79
SYNE3-204ENST00000555759 LMBRD1Q9NUN5 540 aa20.01■□□□□ 0.79
SYNE3-204ENST00000555759 PIK3C2GO75747 1445 aa20.01■□□□□ 0.79
SYNE3-204ENST00000555759 METAP2P50579 478 aaKnown RBP eCLIP20■□□□□ 0.79
SYNE3-204ENST00000555759 HOOK3Q86VS8 718 aa20■□□□□ 0.79
SYNE3-204ENST00000555759 KIF5BP33176 963 aa20■□□□□ 0.79
SYNE3-204ENST00000555759 ELF2Q15723 593 aa20■□□□□ 0.79
SYNE3-204ENST00000555759 NOP2P46087 812 aaKnown RBP20■□□□□ 0.79
SYNE3-204ENST00000555759 AK2P54819 239 aa20■□□□□ 0.79
SYNE3-204ENST00000555759 KIAA0753Q2KHM9 967 aa20■□□□□ 0.79
SYNE3-204ENST00000555759 CCDC194A0A1B0GVG4 234 aa20■□□□□ 0.79
SYNE3-204ENST00000555759 ZNF75DP51815 510 aa20■□□□□ 0.79
SYNE3-204ENST00000555759 KIF5AQ12840 1032 aa20■□□□□ 0.79
SYNE3-204ENST00000555759 ZNF569Q5MCW4 686 aa20■□□□□ 0.79
SYNE3-204ENST00000555759 TSHZ3Q63HK5 1081 aa20■□□□□ 0.79
SYNE3-204ENST00000555759 CEP63Q96MT8 703 aa20■□□□□ 0.79
SYNE3-204ENST00000555759 CPSF2Q9P2I0 782 aaKnown RBP20■□□□□ 0.79
SYNE3-204ENST00000555759 PUF60Q9UHX1 559 aaKnown RBP20■□□□□ 0.79
SYNE3-204ENST00000555759 SPTLC2O15270 562 aa19.99■□□□□ 0.79
SYNE3-204ENST00000555759 KIF4AO95239 1232 aa19.99■□□□□ 0.79
SYNE3-204ENST00000555759 SSR1P43307 286 aaKnown RBP19.99■□□□□ 0.79
SYNE3-204ENST00000555759 IQCA1Q86XH1 822 aa19.99■□□□□ 0.79
SYNE3-204ENST00000555759 PLEKHM2Q8IWE5 1019 aa19.99■□□□□ 0.79
SYNE3-204ENST00000555759 TRIM47Q96LD4 638 aa19.99■□□□□ 0.79
SYNE3-204ENST00000555759 CYB5RLQ6IPT4 315 aa19.99■□□□□ 0.79
SYNE3-204ENST00000555759 TCP11L1Q9NUJ3 509 aa19.99■□□□□ 0.79
SYNE3-204ENST00000555759 DBF4Q9UBU7 674 aaPredicted RBP19.99■□□□□ 0.79
SYNE3-204ENST00000555759 RLBP1P12271 317 aa19.99■□□□□ 0.79
SYNE3-204ENST00000555759 LRRC27Q9C0I9 530 aa19.99■□□□□ 0.79
SYNE3-204ENST00000555759 CDK13Q14004 1512 aaKnown RBP19.99■□□□□ 0.79
SYNE3-204ENST00000555759 ZNF287Q9HBT7 754 aa19.99■□□□□ 0.79
SYNE3-204ENST00000555759 RHOXF2BP0C7M4 288 aa19.99■□□□□ 0.79
SYNE3-204ENST00000555759 INPP5BP32019 993 aa19.99■□□□□ 0.79
SYNE3-204ENST00000555759 CCDC40Q4G0X9 1142 aa19.99■□□□□ 0.79
SYNE3-204ENST00000555759 SCLT1Q96NL6 688 aa19.99■□□□□ 0.79
SYNE3-204ENST00000555759 RHOXF2Q9BQY4 288 aa19.99■□□□□ 0.79
SYNE3-204ENST00000555759 BAG1Q99933 345 aaPredicted RBP19.98■□□□□ 0.79
SYNE3-204ENST00000555759 UTP14AQ9BVJ6 771 aaKnown RBP19.98■□□□□ 0.79
SYNE3-204ENST00000555759 SEC63Q9UGP8 760 aaKnown RBP19.98■□□□□ 0.79
SYNE3-204ENST00000555759 SAMD1Q6SPF0 538 aaPredicted RBP19.98■□□□□ 0.79
SYNE3-204ENST00000555759 CPLX4Q7Z7G2 160 aa19.98■□□□□ 0.79
SYNE3-204ENST00000555759 CNGA4Q8IV77 575 aa19.98■□□□□ 0.79
SYNE3-204ENST00000555759 NLRP5P59047 1200 aa19.98■□□□□ 0.79
SYNE3-204ENST00000555759 RRAGBQ5VZM2 374 aa19.98■□□□□ 0.79
SYNE3-204ENST00000555759 CALML4Q96GE6 196 aa19.97■□□□□ 0.79
SYNE3-204ENST00000555759 RASAL2Q9UJF2 1139 aa19.97■□□□□ 0.79
SYNE3-204ENST00000555759 ATP8B2P98198 1209 aa19.97■□□□□ 0.79
SYNE3-204ENST00000555759 METTL24Q5JXM2 366 aa19.97■□□□□ 0.79
SYNE3-204ENST00000555759 ARHGAP25P42331 645 aa19.97■□□□□ 0.79
SYNE3-204ENST00000555759 ZEB2O60315 1214 aa19.97■□□□□ 0.79
SYNE3-204ENST00000555759 MAP3K12Q12852 859 aa19.97■□□□□ 0.79
SYNE3-204ENST00000555759 NAA25Q14CX7 972 aa19.97■□□□□ 0.79
SYNE3-204ENST00000555759 MEIS3Q99687 375 aa19.97■□□□□ 0.79
SYNE3-204ENST00000555759 NUP160Q12769 1436 aa19.97■□□□□ 0.79
SYNE3-204ENST00000555759 KARSQ15046 597 aaKnown RBP19.96■□□□□ 0.79
SYNE3-204ENST00000555759 UBA7P41226 1012 aa19.96■□□□□ 0.79
SYNE3-204ENST00000555759 MYL5Q02045 173 aa19.96■□□□□ 0.79
SYNE3-204ENST00000555759 TMEM132AQ24JP5 1023 aa19.96■□□□□ 0.79
SYNE3-204ENST00000555759 CATIPQ7Z7H3 387 aa19.96■□□□□ 0.79
SYNE3-204ENST00000555759 LZTFL1Q9NQ48 299 aa19.96■□□□□ 0.79
SYNE3-204ENST00000555759 TTC41PQ6P2S7 1318 aa19.96■□□□□ 0.79
SYNE3-204ENST00000555759 PRPF4BQ13523 1007 aaKnown RBP19.96■□□□□ 0.79
SYNE3-204ENST00000555759 CFAP58Q5T655 872 aa19.96■□□□□ 0.79
SYNE3-204ENST00000555759 DRC1Q96MC2 740 aa19.96■□□□□ 0.79
SYNE3-204ENST00000555759 CLSTN2Q9H4D0 955 aa19.96■□□□□ 0.79
SYNE3-204ENST00000555759 FAM160A1Q05DH4 1040 aa19.95■□□□□ 0.78
SYNE3-204ENST00000555759 BRAPQ7Z569 592 aa19.95■□□□□ 0.78
SYNE3-204ENST00000555759 NUDT16Q96DE0 195 aaKnown RBP19.95■□□□□ 0.78
SYNE3-204ENST00000555759 FAM135AQ9P2D6 1515 aa19.95■□□□□ 0.78
SYNE3-204ENST00000555759 SARNPP82979 210 aaKnown RBP19.95■□□□□ 0.78
SYNE3-204ENST00000555759 TMEM67Q5HYA8 995 aa19.95■□□□□ 0.78
SYNE3-204ENST00000555759 PLVAPQ9BX97 442 aa19.95■□□□□ 0.78
SYNE3-204ENST00000555759 CHMP4BP1P59074 171 aa19.95■□□□□ 0.78
SYNE3-204ENST00000555759 CCDC172P0C7W6 258 aa19.95■□□□□ 0.78
SYNE3-204ENST00000555759 PRPHP41219 470 aa19.95■□□□□ 0.78
SYNE3-204ENST00000555759 CEP83Q9Y592 693 aa19.95■□□□□ 0.78
SYNE3-204ENST00000555759 MYO1BO43795 1136 aa19.94■□□□□ 0.78
SYNE3-204ENST00000555759 CETN1Q12798 172 aa19.94■□□□□ 0.78
SYNE3-204ENST00000555759 CTNNBL1Q8WYA6 563 aaPredicted RBP19.94■□□□□ 0.78
SYNE3-204ENST00000555759 CCDC77Q9BR77 488 aa19.94■□□□□ 0.78
SYNE3-204ENST00000555759 SAMD15Q9P1V8 674 aa19.94■□□□□ 0.78
SYNE3-204ENST00000555759 RBM28Q9NW13 759 aaKnown RBP19.94■□□□□ 0.78
SYNE3-204ENST00000555759 KLF18A0A0U1RQI7 1052 aa19.94■□□□□ 0.78
SYNE3-204ENST00000555759 OAS2P29728 719 aaKnown RBP19.94■□□□□ 0.78
SYNE3-204ENST00000555759 ZSCAN26Q16670 478 aa19.94■□□□□ 0.78
SYNE3-204ENST00000555759 WWC2Q6AWC2 1192 aa19.94■□□□□ 0.78
SYNE3-204ENST00000555759 ALG1Q9BT22 464 aa19.94■□□□□ 0.78
SYNE3-204ENST00000555759 LACTBP83111 547 aaPredicted RBP19.93■□□□□ 0.78
SYNE3-204ENST00000555759 TTF1Q15361 905 aaPredicted RBP19.93■□□□□ 0.78
SYNE3-204ENST00000555759 Q6ZUG5 572 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms