RNA–Protein interactions for RNA: ENST00000553426.1

LINC00643-202, long intergenic non-protein coding RNA 643, humanhuman

TSL 3 BASIC

Gene LINC00643, Length 526 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-202ENST00000553426 TRIM28Q13263 835 aaKnown RBP16.46■□□□□ 0.23
LINC00643-202ENST00000553426 AOC3Q16853 763 aa16.46■□□□□ 0.23
LINC00643-202ENST00000553426 CCDC30Q5VVM6 783 aa16.46■□□□□ 0.23
LINC00643-202ENST00000553426 ZNF428Q96B54 188 aa16.46■□□□□ 0.23
LINC00643-202ENST00000553426 ZNRF3Q9ULT6 936 aa16.46■□□□□ 0.23
LINC00643-202ENST00000553426 PASKQ96RG2 1323 aa16.45■□□□□ 0.22
LINC00643-202ENST00000553426 TMEM88BA6NKF7 163 aa16.45■□□□□ 0.22
LINC00643-202ENST00000553426 CNTROBQ8N137 903 aa16.45■□□□□ 0.22
LINC00643-202ENST00000553426 IRS4O14654 1257 aaPredicted RBP16.44■□□□□ 0.22
LINC00643-202ENST00000553426 ITGBL1O95965 494 aaPredicted RBP16.44■□□□□ 0.22
LINC00643-202ENST00000553426 SF3B3Q15393 1217 aaKnown RBP16.44■□□□□ 0.22
LINC00643-202ENST00000553426 RTL5Q5HYW3 569 aaPredicted RBP16.44■□□□□ 0.22
LINC00643-202ENST00000553426 MKRN1Q9UHC7 482 aaKnown RBP16.44■□□□□ 0.22
LINC00643-202ENST00000553426 SCNN1DP51172 638 aa16.43■□□□□ 0.22
LINC00643-202ENST00000553426 KIAA2012Q0VF49 1180 aa16.43■□□□□ 0.22
LINC00643-202ENST00000553426 MAP1SQ66K74 1059 aaPredicted RBP16.43■□□□□ 0.22
LINC00643-202ENST00000553426 USP50Q70EL3 339 aaPredicted RBP16.43■□□□□ 0.22
LINC00643-202ENST00000553426 SLC51AQ86UW1 340 aa16.43■□□□□ 0.22
LINC00643-202ENST00000553426 C8orf58Q8NAV2 365 aa16.43■□□□□ 0.22
LINC00643-202ENST00000553426 PHAXQ9H814 394 aaKnown RBP16.43■□□□□ 0.22
LINC00643-202ENST00000553426 ANP32CO43423 234 aa16.42■□□□□ 0.22
LINC00643-202ENST00000553426 EPS15P42566 896 aa16.42■□□□□ 0.22
LINC00643-202ENST00000553426 CXCL9Q07325 125 aa16.42■□□□□ 0.22
LINC00643-202ENST00000553426 TNIP1Q15025 636 aa16.42■□□□□ 0.22
LINC00643-202ENST00000553426 CCDC27Q2M243 656 aa16.42■□□□□ 0.22
LINC00643-202ENST00000553426 CIAPIN1Q6FI81 312 aa16.42■□□□□ 0.22
LINC00643-202ENST00000553426 ZBTB38Q8NAP3 1195 aaPredicted RBP16.42■□□□□ 0.22
LINC00643-202ENST00000553426 CCDC191Q8NCU4 936 aa16.42■□□□□ 0.22
LINC00643-202ENST00000553426 MYD88Q99836 296 aa16.42■□□□□ 0.22
LINC00643-202ENST00000553426 BCL2L13Q9BXK5 485 aa16.42■□□□□ 0.22
LINC00643-202ENST00000553426 STK31Q9BXU1 1019 aa16.42■□□□□ 0.22
LINC00643-202ENST00000553426 NSFL1CQ9UNZ2 370 aaKnown RBP16.42■□□□□ 0.22
LINC00643-202ENST00000553426 COL4A5P29400 1685 aa16.42■□□□□ 0.22
LINC00643-202ENST00000553426 LAMB2P55268 1798 aa16.41■□□□□ 0.22
LINC00643-202ENST00000553426 MRS2Q9HD23 443 aa16.41■□□□□ 0.22
LINC00643-202ENST00000553426 ADARB2Q9NS39 739 aaKnown RBP16.41■□□□□ 0.22
LINC00643-202ENST00000553426 CWC25Q9NXE8 425 aaPredicted RBP16.41■□□□□ 0.22
LINC00643-202ENST00000553426 FOXN1O15353 648 aa16.4■□□□□ 0.22
LINC00643-202ENST00000553426 RPS8P62241 208 aaKnown RBP16.4■□□□□ 0.22
LINC00643-202ENST00000553426 WASHC4Q2M389 1173 aa16.4■□□□□ 0.22
LINC00643-202ENST00000553426 CELF1Q92879 486 aaKnown RBP16.4■□□□□ 0.22
LINC00643-202ENST00000553426 METTL22Q9BUU2 404 aaPredicted RBP16.4■□□□□ 0.22
LINC00643-202ENST00000553426 GPRC5DQ9NZD1 345 aa16.4■□□□□ 0.22
LINC00643-202ENST00000553426 CNTNAP1P78357 1384 aa16.39■□□□□ 0.21
LINC00643-202ENST00000553426 C6orf229H3BNL8 230 aa16.39■□□□□ 0.21
LINC00643-202ENST00000553426 RAD17O75943 681 aa16.39■□□□□ 0.21
LINC00643-202ENST00000553426 NEXNQ0ZGT2 675 aa16.39■□□□□ 0.21
LINC00643-202ENST00000553426 CCDC152Q4G0S7 254 aa16.39■□□□□ 0.21
LINC00643-202ENST00000553426 CCDC184Q52MB2 194 aa16.39■□□□□ 0.21
LINC00643-202ENST00000553426 WWC1Q8IX03 1113 aa16.39■□□□□ 0.21
LINC00643-202ENST00000553426 EYA3Q99504 573 aa16.39■□□□□ 0.21
LINC00643-202ENST00000553426 CDHR2Q9BYE9 1310 aa16.39■□□□□ 0.21
LINC00643-202ENST00000553426 ZNF316A6NFI3 1004 aaPredicted RBP16.38■□□□□ 0.21
LINC00643-202ENST00000553426 PCCAP05165 728 aaPredicted RBP16.38■□□□□ 0.21
LINC00643-202ENST00000553426 GMPSP49915 693 aaPredicted RBP16.38■□□□□ 0.21
LINC00643-202ENST00000553426 NCBP3Q53F19 620 aaKnown RBP16.38■□□□□ 0.21
LINC00643-202ENST00000553426 TSR2Q969E8 191 aaKnown RBP16.38■□□□□ 0.21
LINC00643-202ENST00000553426 ABT1Q9ULW3 272 aaKnown RBP16.38■□□□□ 0.21
LINC00643-202ENST00000553426 MAP3K2Q9Y2U5 619 aa16.38■□□□□ 0.21
LINC00643-202ENST00000553426 ADAMTSL1Q8N6G6 1762 aa16.38■□□□□ 0.21
LINC00643-202ENST00000553426 DDX60Q8IY21 1712 aaKnown RBP16.37■□□□□ 0.21
LINC00643-202ENST00000553426 PDE8AO60658 829 aa16.37■□□□□ 0.21
LINC00643-202ENST00000553426 DEFB115Q30KQ5 88 aa16.37■□□□□ 0.21
LINC00643-202ENST00000553426 KSR2Q6VAB6 950 aa16.37■□□□□ 0.21
LINC00643-202ENST00000553426 TSPYL6Q8N831 410 aa16.37■□□□□ 0.21
LINC00643-202ENST00000553426 IL16Q14005 1332 aa16.37■□□□□ 0.21
LINC00643-202ENST00000553426 G3V3G9 751 aa16.36■□□□□ 0.21
LINC00643-202ENST00000553426 H7C1D1 291 aa16.36■□□□□ 0.21
LINC00643-202ENST00000553426 RIMBP2O15034 1052 aa16.36■□□□□ 0.21
LINC00643-202ENST00000553426 TWISTNBQ3B726 338 aaPredicted RBP16.36■□□□□ 0.21
LINC00643-202ENST00000553426 DCAF8Q5TAQ9 597 aa16.36■□□□□ 0.21
LINC00643-202ENST00000553426 AIDAQ96BJ3 306 aa16.36■□□□□ 0.21
LINC00643-202ENST00000553426 ANKIB1Q9P2G1 1089 aa16.36■□□□□ 0.21
LINC00643-202ENST00000553426 PI4KAP2A4QPH2 592 aa16.35■□□□□ 0.21
LINC00643-202ENST00000553426 RASSF10A6NK89 507 aa16.35■□□□□ 0.21
LINC00643-202ENST00000553426 VEGFBP49765 207 aa16.35■□□□□ 0.21
LINC00643-202ENST00000553426 GPSM2P81274 684 aa16.35■□□□□ 0.21
LINC00643-202ENST00000553426 PI4KAP1Q8N8J0 262 aa16.35■□□□□ 0.21
LINC00643-202ENST00000553426 ZC3H12CQ9C0D7 883 aaKnown RBP16.35■□□□□ 0.21
LINC00643-202ENST00000553426 LTBP1Q14766 1721 aa16.34■□□□□ 0.21
LINC00643-202ENST00000553426 TAF1P21675 1872 aa16.34■□□□□ 0.21
LINC00643-202ENST00000553426 TBC1D16Q8TBP0 767 aa16.34■□□□□ 0.21
LINC00643-202ENST00000553426 ZC3H15Q8WU90 426 aaKnown RBP16.34■□□□□ 0.21
LINC00643-202ENST00000553426 DBNDD1Q9H9R9 158 aa16.34■□□□□ 0.21
LINC00643-202ENST00000553426 SEC31BQ9NQW1 1179 aa16.34■□□□□ 0.21
LINC00643-202ENST00000553426 POLLQ9UGP5 575 aa16.34■□□□□ 0.21
LINC00643-202ENST00000553426 CNOT7Q9UIV1 285 aaKnown RBP16.34■□□□□ 0.21
LINC00643-202ENST00000553426 LRRC37AA6NMS7 1700 aa16.33■□□□□ 0.21
LINC00643-202ENST00000553426 YDJCA8MPS7 323 aa16.33■□□□□ 0.2
LINC00643-202ENST00000553426 SLC4A2P04920 1241 aa16.33■□□□□ 0.2
LINC00643-202ENST00000553426 PAXIP1Q6ZW49 1069 aaPredicted RBP16.33■□□□□ 0.2
LINC00643-202ENST00000553426 ANKRD18AQ8IVF6 992 aa16.33■□□□□ 0.2
LINC00643-202ENST00000553426 DPF2Q92785 391 aa16.33■□□□□ 0.2
LINC00643-202ENST00000553426 JARID2Q92833 1246 aaPredicted RBP16.33■□□□□ 0.2
LINC00643-202ENST00000553426 CCDC85AQ96PX6 553 aaPredicted RBP16.33■□□□□ 0.2
LINC00643-202ENST00000553426 CDC5LQ99459 802 aaKnown RBP16.33■□□□□ 0.2
LINC00643-202ENST00000553426 PODXL2Q9NZ53 605 aa16.33■□□□□ 0.2
LINC00643-202ENST00000553426 GGA1Q9UJY5 639 aa16.33■□□□□ 0.2
LINC00643-202ENST00000553426 PSMD14O00487 310 aa16.32■□□□□ 0.2
LINC00643-202ENST00000553426 ECE2O60344 883 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms