RNA–Protein interactions for RNA: ENST00000552254.5

CDK4-211, Transcript of cyclin dependent kinase 4, human

TSL 2

Gene CDK4, Length 769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK4-211	ENST00000552254	DLL1	O00548	723 aa		11.72	□□□□□ -0.53
CDK4-211	ENST00000552254	DDX58	O95786	925 aa	Known RBP	11.72	□□□□□ -0.53
CDK4-211	ENST00000552254	NPR1	P16066	1061 aa		11.72	□□□□□ -0.53
CDK4-211	ENST00000552254	PARP10	Q53GL7	1025 aa		11.72	□□□□□ -0.53
CDK4-211	ENST00000552254	SLC51A	Q86UW1	340 aa		11.72	□□□□□ -0.53
CDK4-211	ENST00000552254	NYX	Q9GZU5	481 aa		11.72	□□□□□ -0.53
CDK4-211	ENST00000552254	FLII	Q13045	1269 aa		11.71	□□□□□ -0.53
CDK4-211	ENST00000552254	KSR2	Q6VAB6	950 aa		11.71	□□□□□ -0.53
CDK4-211	ENST00000552254	PPP1R42	Q7Z4L9	355 aa		11.71	□□□□□ -0.53
CDK4-211	ENST00000552254	NLRP10	Q86W26	655 aa		11.71	□□□□□ -0.53
CDK4-211	ENST00000552254	C7orf43	Q8WVR3	580 aa		11.71	□□□□□ -0.53
CDK4-211	ENST00000552254	ISCA1	Q9BUE6	129 aa		11.71	□□□□□ -0.53
CDK4-211	ENST00000552254	DDX60	Q8IY21	1712 aa	Known RBP	11.71	□□□□□ -0.54
CDK4-211	ENST00000552254	PI4KAP2	A4QPH2	592 aa		11.7	□□□□□ -0.54
CDK4-211	ENST00000552254	ATP5J2-PTCD1	G3V325	749 aa		11.7	□□□□□ -0.54
CDK4-211	ENST00000552254	NTSR2	O95665	410 aa		11.7	□□□□□ -0.54
CDK4-211	ENST00000552254	C3orf67	Q6ZVT6	689 aa		11.7	□□□□□ -0.54
CDK4-211	ENST00000552254	PI4KAP1	Q8N8J0	262 aa		11.7	□□□□□ -0.54
CDK4-211	ENST00000552254	METTL22	Q9BUU2	404 aa	Predicted RBP	11.7	□□□□□ -0.54
CDK4-211	ENST00000552254	UTP14A	Q9BVJ6	771 aa	Known RBP	11.7	□□□□□ -0.54
CDK4-211	ENST00000552254	TAF1D	Q9H5J8	278 aa	Predicted RBP	11.7	□□□□□ -0.54
CDK4-211	ENST00000552254	MAP3K2	Q9Y2U5	619 aa		11.7	□□□□□ -0.54
CDK4-211	ENST00000552254	RASSF10	A6NK89	507 aa		11.69	□□□□□ -0.54
CDK4-211	ENST00000552254	CT47B1	P0C2W7	299 aa	Predicted RBP	11.69	□□□□□ -0.54
CDK4-211	ENST00000552254	ECE1	P42892	770 aa		11.69	□□□□□ -0.54
CDK4-211	ENST00000552254	TRIM28	Q13263	835 aa	Known RBP	11.69	□□□□□ -0.54
CDK4-211	ENST00000552254	CCDC93	Q567U6	631 aa		11.69	□□□□□ -0.54
CDK4-211	ENST00000552254	MRPL50	Q8N5N7	158 aa	Known RBP	11.69	□□□□□ -0.54
CDK4-211	ENST00000552254	SSH1	Q8WYL5	1049 aa		11.69	□□□□□ -0.54
CDK4-211	ENST00000552254	MYD88	Q99836	296 aa		11.69	□□□□□ -0.54
CDK4-211	ENST00000552254	HACL1	Q9UJ83	578 aa		11.69	□□□□□ -0.54
CDK4-211	ENST00000552254	RIC1	Q4ADV7	1423 aa		11.69	□□□□□ -0.54
CDK4-211	ENST00000552254	TAF1	P21675	1872 aa		11.68	□□□□□ -0.54
CDK4-211	ENST00000552254	RNF123	Q5XPI4	1314 aa		11.68	□□□□□ -0.54
CDK4-211	ENST00000552254	LTBP3	Q9NS15	1303 aa		11.68	□□□□□ -0.54
CDK4-211	ENST00000552254	FKBP5	Q13451	457 aa	Predicted RBP	11.68	□□□□□ -0.54
CDK4-211	ENST00000552254	ALDH1L2	Q3SY69	923 aa		11.68	□□□□□ -0.54
CDK4-211	ENST00000552254	SLC10A5	Q5PT55	438 aa		11.68	□□□□□ -0.54
CDK4-211	ENST00000552254	SOGA3	Q5TF21	947 aa		11.68	□□□□□ -0.54
CDK4-211	ENST00000552254	SYNE4	Q8N205	404 aa		11.68	□□□□□ -0.54
CDK4-211	ENST00000552254	GCC1	Q96CN9	775 aa		11.68	□□□□□ -0.54
CDK4-211	ENST00000552254	ZNF277	Q9NRM2	450 aa	Predicted RBP	11.68	□□□□□ -0.54
CDK4-211	ENST00000552254	TRMT112	Q9UI30	125 aa	Known RBP	11.68	□□□□□ -0.54
CDK4-211	ENST00000552254	TSKS	Q9UJT2	592 aa		11.68	□□□□□ -0.54
CDK4-211	ENST00000552254	MYH3	P11055	1940 aa		11.68	□□□□□ -0.54
CDK4-211	ENST00000552254	THSD7B	Q9C0I4	1608 aa		11.68	□□□□□ -0.54
CDK4-211	ENST00000552254	ALDH1B1	P30837	517 aa		11.67	□□□□□ -0.54
CDK4-211	ENST00000552254	EPHX2	P34913	555 aa		11.67	□□□□□ -0.54
CDK4-211	ENST00000552254	CRY2	Q49AN0	593 aa		11.67	□□□□□ -0.54
CDK4-211	ENST00000552254	MAP1S	Q66K74	1059 aa	Predicted RBP	11.67	□□□□□ -0.54
CDK4-211	ENST00000552254	CNTROB	Q8N137	903 aa		11.67	□□□□□ -0.54
CDK4-211	ENST00000552254	CCDC191	Q8NCU4	936 aa		11.67	□□□□□ -0.54
CDK4-211	ENST00000552254	RPGR	Q92834	1020 aa	Known RBP	11.67	□□□□□ -0.54
CDK4-211	ENST00000552254	CAPNS2	Q96L46	248 aa		11.67	□□□□□ -0.54
CDK4-211	ENST00000552254		F6X3S4	739 aa		11.66	□□□□□ -0.54
CDK4-211	ENST00000552254	ITGBL1	O95965	494 aa	Predicted RBP	11.66	□□□□□ -0.54
CDK4-211	ENST00000552254	IGKV5-2	P06315	115 aa		11.66	□□□□□ -0.54
CDK4-211	ENST00000552254	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.66	□□□□□ -0.54
CDK4-211	ENST00000552254	NEXN	Q0ZGT2	675 aa		11.66	□□□□□ -0.54
CDK4-211	ENST00000552254	PNMA8A	Q86V59	439 aa	Predicted RBP	11.66	□□□□□ -0.54
CDK4-211	ENST00000552254	DNAAF4	Q8WXU2	420 aa		11.66	□□□□□ -0.54
CDK4-211	ENST00000552254	BCL2L13	Q9BXK5	485 aa		11.66	□□□□□ -0.54
CDK4-211	ENST00000552254	MCOLN1	Q9GZU1	580 aa		11.66	□□□□□ -0.54
CDK4-211	ENST00000552254	CWC25	Q9NXE8	425 aa	Predicted RBP	11.66	□□□□□ -0.54
CDK4-211	ENST00000552254	SH3TC1	Q8TE82	1336 aa		11.65	□□□□□ -0.54
CDK4-211	ENST00000552254	PITPNM2	Q9BZ72	1349 aa		11.65	□□□□□ -0.54
CDK4-211	ENST00000552254	HCLS1	P14317	486 aa	Predicted RBP	11.65	□□□□□ -0.54
CDK4-211	ENST00000552254	RARS	P54136	660 aa	Known RBP	11.65	□□□□□ -0.54
CDK4-211	ENST00000552254	DGKZ	Q13574	1117 aa		11.65	□□□□□ -0.54
CDK4-211	ENST00000552254	CWF19L2	Q2TBE0	894 aa	Known RBP	11.65	□□□□□ -0.54
CDK4-211	ENST00000552254	FAM89A	Q96GI7	184 aa		11.65	□□□□□ -0.54
CDK4-211	ENST00000552254	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.65	□□□□□ -0.54
CDK4-211	ENST00000552254	GPR101	Q96P66	508 aa	Predicted RBP	11.65	□□□□□ -0.54
CDK4-211	ENST00000552254	SMC4	Q9NTJ3	1288 aa		11.65	□□□□□ -0.54
CDK4-211	ENST00000552254	COL4A5	P29400	1685 aa		11.65	□□□□□ -0.55
CDK4-211	ENST00000552254	ZNF541	Q9H0D2	1346 aa		11.64	□□□□□ -0.55
CDK4-211	ENST00000552254	SNED1	Q8TER0	1413 aa		11.64	□□□□□ -0.55
CDK4-211	ENST00000552254	NEURL1B	A8MQ27	555 aa		11.64	□□□□□ -0.55
CDK4-211	ENST00000552254	PCCA	P05165	728 aa	Predicted RBP	11.64	□□□□□ -0.55
CDK4-211	ENST00000552254	BRPF1	P55201	1214 aa	Predicted RBP	11.64	□□□□□ -0.55
CDK4-211	ENST00000552254	RTL5	Q5HYW3	569 aa	Predicted RBP	11.64	□□□□□ -0.55
CDK4-211	ENST00000552254	CYP4F22	Q6NT55	531 aa		11.64	□□□□□ -0.55
CDK4-211	ENST00000552254	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	11.64	□□□□□ -0.55
CDK4-211	ENST00000552254	LINS1	Q8NG48	757 aa		11.64	□□□□□ -0.55
CDK4-211	ENST00000552254	RBM17	Q96I25	401 aa	Known RBP	11.64	□□□□□ -0.55
CDK4-211	ENST00000552254	NLRP3	Q96P20	1036 aa		11.64	□□□□□ -0.55
CDK4-211	ENST00000552254	ADAMTSL1	Q8N6G6	1762 aa		11.64	□□□□□ -0.55
CDK4-211	ENST00000552254	LTBP1	Q14766	1721 aa		11.63	□□□□□ -0.55
CDK4-211	ENST00000552254	PTPRC	P08575	1304 aa		11.63	□□□□□ -0.55
CDK4-211	ENST00000552254	CASP8AP2	Q9UKL3	1982 aa		11.63	□□□□□ -0.55
CDK4-211	ENST00000552254	PPEF1	O14829	653 aa	Predicted RBP	11.63	□□□□□ -0.55
CDK4-211	ENST00000552254	LMOD1	P29536	600 aa	Predicted RBP	11.63	□□□□□ -0.55
CDK4-211	ENST00000552254	HOXA10	P31260	410 aa	Predicted RBP	11.63	□□□□□ -0.55
CDK4-211	ENST00000552254	IARS	P41252	1262 aa	Known RBP	11.63	□□□□□ -0.55
CDK4-211	ENST00000552254	BEND3	Q5T5X7	828 aa		11.63	□□□□□ -0.55
CDK4-211	ENST00000552254	RTKN2	Q8IZC4	609 aa		11.63	□□□□□ -0.55
CDK4-211	ENST00000552254	JARID2	Q92833	1246 aa	Predicted RBP	11.63	□□□□□ -0.55
CDK4-211	ENST00000552254	SZT2	Q5T011	3432 aa		11.63	□□□□□ -0.55
CDK4-211	ENST00000552254	TRPM7	Q96QT4	1865 aa		11.63	□□□□□ -0.55
CDK4-211	ENST00000552254	IRS4	O14654	1257 aa	Predicted RBP	11.62	□□□□□ -0.55

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