RNA–Protein interactions for RNA: ENST00000550914.6

PTCH1-221, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-221ENST00000550914 HCLS1P14317 486 aaPredicted RBP16.77■□□□□ 0.28
PTCH1-221ENST00000550914 CXCL9Q07325 125 aa16.77■□□□□ 0.28
PTCH1-221ENST00000550914 KIAA2012Q0VF49 1180 aa16.77■□□□□ 0.28
PTCH1-221ENST00000550914 WDR43Q15061 677 aaKnown RBP eCLIP16.77■□□□□ 0.28
PTCH1-221ENST00000550914 NEUROD2Q15784 382 aa16.77■□□□□ 0.28
PTCH1-221ENST00000550914 ABT1Q9ULW3 272 aaKnown RBP16.77■□□□□ 0.28
PTCH1-221ENST00000550914 WDR33Q9C0J8 1336 aaKnown RBP16.76■□□□□ 0.27
PTCH1-221ENST00000550914 MAP2K1Q02750 393 aaPredicted RBP16.76■□□□□ 0.27
PTCH1-221ENST00000550914 HDGFL1Q5TGJ6 251 aa16.76■□□□□ 0.27
PTCH1-221ENST00000550914 CCDC146Q8IYE0 955 aa16.76■□□□□ 0.27
PTCH1-221ENST00000550914 PLBD2Q8NHP8 589 aa16.76■□□□□ 0.27
PTCH1-221ENST00000550914 CHPF2Q9P2E5 772 aa16.76■□□□□ 0.27
PTCH1-221ENST00000550914 DBF4Q9UBU7 674 aaPredicted RBP16.76■□□□□ 0.27
PTCH1-221ENST00000550914 DDX10Q13206 875 aaKnown RBP16.75■□□□□ 0.27
PTCH1-221ENST00000550914 TNIP1Q15025 636 aa16.75■□□□□ 0.27
PTCH1-221ENST00000550914 KRT24Q2M2I5 525 aa16.75■□□□□ 0.27
PTCH1-221ENST00000550914 ANKRD13DQ6ZTN6 518 aa16.75■□□□□ 0.27
PTCH1-221ENST00000550914 CIAPIN1Q6FI81 312 aa16.74■□□□□ 0.27
PTCH1-221ENST00000550914 CFAP44Q96MT7 982 aa16.74■□□□□ 0.27
PTCH1-221ENST00000550914 ISCA1Q9BUE6 129 aa16.74■□□□□ 0.27
PTCH1-221ENST00000550914 HYPKQ9NX55 129 aa16.74■□□□□ 0.27
PTCH1-221ENST00000550914 LAS1LQ9Y4W2 734 aaKnown RBP16.74■□□□□ 0.27
PTCH1-221ENST00000550914 DUOX1Q9NRD9 1551 aa16.73■□□□□ 0.27
PTCH1-221ENST00000550914 ECE1P42892 770 aa16.73■□□□□ 0.27
PTCH1-221ENST00000550914 GMPSP49915 693 aaPredicted RBP16.73■□□□□ 0.27
PTCH1-221ENST00000550914 TRIM28Q13263 835 aaKnown RBP16.73■□□□□ 0.27
PTCH1-221ENST00000550914 SF3B3Q15393 1217 aaKnown RBP16.73■□□□□ 0.27
PTCH1-221ENST00000550914 ZC3H15Q8WU90 426 aaKnown RBP16.73■□□□□ 0.27
PTCH1-221ENST00000550914 PGAP2Q9UHJ9 254 aa16.73■□□□□ 0.27
PTCH1-221ENST00000550914 ADAMTS8Q9UP79 889 aa16.73■□□□□ 0.27
PTCH1-221ENST00000550914 CST9Q5W186 159 aa16.72■□□□□ 0.27
PTCH1-221ENST00000550914 TLL2Q9Y6L7 1015 aa16.72■□□□□ 0.27
PTCH1-221ENST00000550914 LBX1P52954 281 aa16.71■□□□□ 0.27
PTCH1-221ENST00000550914 CAPNS2Q96L46 248 aa16.71■□□□□ 0.27
PTCH1-221ENST00000550914 TRAF5O00463 557 aa16.7■□□□□ 0.26
PTCH1-221ENST00000550914 RAD17O75943 681 aa16.7■□□□□ 0.26
PTCH1-221ENST00000550914 HSPA8P11142 646 aaKnown RBP16.7■□□□□ 0.26
PTCH1-221ENST00000550914 FMR1Q06787 632 aaKnown RBP eCLIP16.7■□□□□ 0.262e-7■■■■■ 26.8
PTCH1-221ENST00000550914 DUSP27Q5VZP5 1158 aa16.7■□□□□ 0.26
PTCH1-221ENST00000550914 FAM89AQ96GI7 184 aa16.7■□□□□ 0.26
PTCH1-221ENST00000550914 HHIPL1Q96JK4 782 aa16.7■□□□□ 0.26
PTCH1-221ENST00000550914 BCL2L13Q9BXK5 485 aa16.7■□□□□ 0.26
PTCH1-221ENST00000550914 ZNF853P0CG23 659 aa16.69■□□□□ 0.26
PTCH1-221ENST00000550914 HSP90B1P14625 803 aaKnown RBP16.69■□□□□ 0.26
PTCH1-221ENST00000550914 DPF2Q92785 391 aa16.69■□□□□ 0.26
PTCH1-221ENST00000550914 MBIPQ9NS73 344 aa16.69■□□□□ 0.26
PTCH1-221ENST00000550914 POLR2AP24928 1970 aaKnown RBP16.69■□□□□ 0.26
PTCH1-221ENST00000550914 YDJCA8MPS7 323 aa16.68■□□□□ 0.26
PTCH1-221ENST00000550914 ATP5J2-PTCD1G3V325 749 aa16.68■□□□□ 0.26
PTCH1-221ENST00000550914 MAP2K2P36507 400 aa16.68■□□□□ 0.26
PTCH1-221ENST00000550914 CALD1Q05682 793 aaKnown RBP16.68■□□□□ 0.26
PTCH1-221ENST00000550914 WASHC4Q2M389 1173 aa16.68■□□□□ 0.26
PTCH1-221ENST00000550914 CYP4F22Q6NT55 531 aa16.68■□□□□ 0.26
PTCH1-221ENST00000550914 GPR101Q96P66 508 aaPredicted RBP16.68■□□□□ 0.26
PTCH1-221ENST00000550914 BEGAINQ9BUH8 593 aa16.68■□□□□ 0.26
PTCH1-221ENST00000550914 IFT57Q9NWB7 429 aa16.68■□□□□ 0.26
PTCH1-221ENST00000550914 CNOT7Q9UIV1 285 aaKnown RBP16.68■□□□□ 0.26
PTCH1-221ENST00000550914 H7C1D1 291 aa16.67■□□□□ 0.26
PTCH1-221ENST00000550914 IRS4O14654 1257 aaPredicted RBP16.67■□□□□ 0.26
PTCH1-221ENST00000550914 CELF2O95319 508 aaKnown RBP16.67■□□□□ 0.26
PTCH1-221ENST00000550914 HIRAP54198 1017 aaPredicted RBP16.67■□□□□ 0.26
PTCH1-221ENST00000550914 PAXIP1Q6ZW49 1069 aaPredicted RBP16.67■□□□□ 0.26
PTCH1-221ENST00000550914 CDC37L1Q7L3B6 337 aa16.67■□□□□ 0.26
PTCH1-221ENST00000550914 SAPCD2Q86UD0 394 aa16.67■□□□□ 0.26
PTCH1-221ENST00000550914 CELF1Q92879 486 aaKnown RBP16.67■□□□□ 0.26
PTCH1-221ENST00000550914 CHMP4AQ9BY43 222 aa16.67■□□□□ 0.26
PTCH1-221ENST00000550914 PRKRIP1Q9H875 184 aaPredicted RBP16.67■□□□□ 0.26
PTCH1-221ENST00000550914 NSFL1CQ9UNZ2 370 aaKnown RBP16.67■□□□□ 0.26
PTCH1-221ENST00000550914 RPS12P25398 132 aaKnown RBP16.66■□□□□ 0.26
PTCH1-221ENST00000550914 GNAI1P63096 354 aa16.66■□□□□ 0.26
PTCH1-221ENST00000550914 GOLGA2Q08379 1002 aa16.66■□□□□ 0.26
PTCH1-221ENST00000550914 ZBTB38Q8NAP3 1195 aaPredicted RBP16.66■□□□□ 0.26
PTCH1-221ENST00000550914 TRPM4Q8TD43 1214 aa16.66■□□□□ 0.26
PTCH1-221ENST00000550914 EYA3Q99504 573 aa16.66■□□□□ 0.26
PTCH1-221ENST00000550914 GLIS2Q9BZE0 524 aaPredicted RBP16.66■□□□□ 0.26
PTCH1-221ENST00000550914 RPS8P62241 208 aaKnown RBP16.65■□□□□ 0.26
PTCH1-221ENST00000550914 MICALL2Q8IY33 904 aa16.65■□□□□ 0.26
PTCH1-221ENST00000550914 POLLQ9UGP5 575 aa16.65■□□□□ 0.26
PTCH1-221ENST00000550914 SCN9AQ15858 1988 aa16.64■□□□□ 0.25
PTCH1-221ENST00000550914 C6orf229H3BNL8 230 aa16.64■□□□□ 0.25
PTCH1-221ENST00000550914 PSMD14O00487 310 aa16.64■□□□□ 0.25
PTCH1-221ENST00000550914 CA12O43570 354 aa16.64■□□□□ 0.25
PTCH1-221ENST00000550914 GPSM2P81274 684 aa16.64■□□□□ 0.25
PTCH1-221ENST00000550914 RIC3Q7Z5B4 369 aa16.64■□□□□ 0.25
PTCH1-221ENST00000550914 CCDC191Q8NCU4 936 aa16.64■□□□□ 0.25
PTCH1-221ENST00000550914 PODXL2Q9NZ53 605 aa16.64■□□□□ 0.25
PTCH1-221ENST00000550914 COL4A1P02462 1669 aa16.64■□□□□ 0.25
PTCH1-221ENST00000550914 PSME4Q14997 1843 aa16.63■□□□□ 0.25
PTCH1-221ENST00000550914 ECE2O60344 883 aa16.63■□□□□ 0.25
PTCH1-221ENST00000550914 TBC1D16Q8TBP0 767 aa16.63■□□□□ 0.25
PTCH1-221ENST00000550914 ZNF428Q96B54 188 aa16.63■□□□□ 0.25
PTCH1-221ENST00000550914 DBNDD1Q9H9R9 158 aa16.63■□□□□ 0.25
PTCH1-221ENST00000550914 APAF1O14727 1248 aa16.62■□□□□ 0.25
PTCH1-221ENST00000550914 PCCAP05165 728 aaPredicted RBP16.62■□□□□ 0.25
PTCH1-221ENST00000550914 GRM1Q13255 1194 aa16.62■□□□□ 0.25
PTCH1-221ENST00000550914 RTL5Q5HYW3 569 aaPredicted RBP16.62■□□□□ 0.25
PTCH1-221ENST00000550914 PHAXQ9H814 394 aaKnown RBP16.62■□□□□ 0.25
PTCH1-221ENST00000550914 ZBTB12Q9Y330 459 aaPredicted RBP16.62■□□□□ 0.25
PTCH1-221ENST00000550914 MYH3P11055 1940 aa16.62■□□□□ 0.25
PTCH1-221ENST00000550914 SHTN1A0MZ66 631 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms