RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-205ENST00000550075 CCDC152Q4G0S7 254 aa32.93■■■□□ 2.86
CPSF6-205ENST00000550075 BEND3Q5T5X7 828 aa32.93■■■□□ 2.86
CPSF6-205ENST00000550075 UBE3BQ7Z3V4 1068 aa32.93■■■□□ 2.86
CPSF6-205ENST00000550075 TMC4Q7Z404 712 aa32.93■■■□□ 2.86
CPSF6-205ENST00000550075 TIAM2Q8IVF5 1701 aa32.93■■■□□ 2.86
CPSF6-205ENST00000550075 FKBP4Q02790 459 aaKnown RBP eCLIP32.92■■■□□ 2.86
CPSF6-205ENST00000550075 SLC4A10Q6U841 1118 aa32.92■■■□□ 2.86
CPSF6-205ENST00000550075 JARID2Q92833 1246 aaPredicted RBP32.91■■■□□ 2.86
CPSF6-205ENST00000550075 DICER1Q9UPY3 1922 aaKnown RBP32.9■■■□□ 2.86
CPSF6-205ENST00000550075 H7C1W4 665 aa32.9■■■□□ 2.86
CPSF6-205ENST00000550075 ALDH1L1O75891 902 aa32.9■■■□□ 2.86
CPSF6-205ENST00000550075 SRCIN1Q9C0H9 1055 aa32.9■■■□□ 2.86
CPSF6-205ENST00000550075 ATP6V0A2Q9Y487 856 aa32.9■■■□□ 2.86
CPSF6-205ENST00000550075 CTSWP56202 376 aa32.89■■■□□ 2.86
CPSF6-205ENST00000550075 OLFM4Q6UX06 510 aa32.89■■■□□ 2.86
CPSF6-205ENST00000550075 KIF16BQ96L93 1317 aa32.88■■■□□ 2.85
CPSF6-205ENST00000550075 SNED1Q8TER0 1413 aa32.87■■■□□ 2.85
CPSF6-205ENST00000550075 BRPF1P55201 1214 aaPredicted RBP32.87■■■□□ 2.85
CPSF6-205ENST00000550075 PSMD1Q99460 953 aa32.87■■■□□ 2.85
CPSF6-205ENST00000550075 TAF1P21675 1872 aa32.86■■■□□ 2.85
CPSF6-205ENST00000550075 RARSP54136 660 aaKnown RBP32.86■■■□□ 2.85
CPSF6-205ENST00000550075 LRRC37AA6NMS7 1700 aa32.85■■■□□ 2.85
CPSF6-205ENST00000550075 PRELPP51888 382 aa32.85■■■□□ 2.85
CPSF6-205ENST00000550075 SP8Q8IXZ3 490 aa32.85■■■□□ 2.85
CPSF6-205ENST00000550075 GPBP1L1Q9HC44 474 aaPredicted RBP32.85■■■□□ 2.85
CPSF6-205ENST00000550075 GRM8O00222 908 aa32.84■■■□□ 2.85
CPSF6-205ENST00000550075 PLA2G12BQ9BX93 195 aa32.84■■■□□ 2.85
CPSF6-205ENST00000550075 C9orf78Q9NZ63 289 aaPredicted RBP32.84■■■□□ 2.85
CPSF6-205ENST00000550075 ZNF526Q8TF50 670 aaPredicted RBP32.83■■■□□ 2.85
CPSF6-205ENST00000550075 CELF1Q92879 486 aaKnown RBP32.83■■■□□ 2.85
CPSF6-205ENST00000550075 RTL9Q8NET4 1388 aa32.83■■■□□ 2.85
CPSF6-205ENST00000550075 CASP7P55210 303 aa32.82■■■□□ 2.84
CPSF6-205ENST00000550075 API5Q9BZZ5 524 aaKnown RBP32.82■■■□□ 2.84
CPSF6-205ENST00000550075 RPS8P62241 208 aaKnown RBP32.81■■■□□ 2.84
CPSF6-205ENST00000550075 TTLL11Q8NHH1 800 aa32.81■■■□□ 2.84
CPSF6-205ENST00000550075 CCDC85AQ96PX6 553 aaPredicted RBP32.81■■■□□ 2.84
CPSF6-205ENST00000550075 CDC5LQ99459 802 aaKnown RBP32.81■■■□□ 2.84
CPSF6-205ENST00000550075 ZNF277Q9NRM2 450 aaPredicted RBP32.81■■■□□ 2.84
CPSF6-205ENST00000550075 KDM2BQ8NHM5 1336 aa32.8■■■□□ 2.84
CPSF6-205ENST00000550075 DPP8Q6V1X1 898 aaPredicted RBP32.8■■■□□ 2.84
CPSF6-205ENST00000550075 SUPT20HQ8NEM7 779 aa32.8■■■□□ 2.84
CPSF6-205ENST00000550075 IARSP41252 1262 aaKnown RBP32.79■■■□□ 2.84
CPSF6-205ENST00000550075 MPNDQ8N594 471 aa32.79■■■□□ 2.84
CPSF6-205ENST00000550075 SEC31BQ9NQW1 1179 aa32.79■■■□□ 2.84
CPSF6-205ENST00000550075 NOB1Q9ULX3 412 aaKnown RBP32.79■■■□□ 2.84
CPSF6-205ENST00000550075 ANKRD18AQ8IVF6 992 aa32.78■■■□□ 2.84
CPSF6-205ENST00000550075 GREM2Q9H772 168 aa32.76■■■□□ 2.83
CPSF6-205ENST00000550075 COL4A1P02462 1669 aa32.75■■■□□ 2.83
CPSF6-205ENST00000550075 IPO8O15397 1037 aaKnown RBP32.75■■■□□ 2.83
CPSF6-205ENST00000550075 CCT4P50991 539 aaKnown RBP32.75■■■□□ 2.83
CPSF6-205ENST00000550075 SLC51AQ86UW1 340 aa32.75■■■□□ 2.83
CPSF6-205ENST00000550075 JDP2Q8WYK2 163 aa32.75■■■□□ 2.83
CPSF6-205ENST00000550075 DPY19L2Q6NUT2 758 aa32.74■■■□□ 2.83
CPSF6-205ENST00000550075 ARHGAP45Q92619 1136 aa32.74■■■□□ 2.83
CPSF6-205ENST00000550075 RTFDC1Q9BY42 306 aaPredicted RBP32.74■■■□□ 2.83
CPSF6-205ENST00000550075 VPS33BQ9H267 617 aa32.74■■■□□ 2.83
CPSF6-205ENST00000550075 SPEF2Q9C093 1822 aa32.72■■■□□ 2.83
CPSF6-205ENST00000550075 CSF1RP07333 972 aa32.72■■■□□ 2.83
CPSF6-205ENST00000550075 FAM161AQ3B820 660 aa32.72■■■□□ 2.83
CPSF6-205ENST00000550075 LARGE2Q8N3Y3 721 aa32.72■■■□□ 2.83
CPSF6-205ENST00000550075 UTYO14607 1347 aa32.72■■■□□ 2.83
CPSF6-205ENST00000550075 GLTPD2A6NH11 291 aa32.71■■■□□ 2.83
CPSF6-205ENST00000550075 PPIP5K2O43314 1243 aa32.71■■■□□ 2.83
CPSF6-205ENST00000550075 IGHMBP2P38935 993 aaKnown RBP32.71■■■□□ 2.83
CPSF6-205ENST00000550075 CHMP3Q9Y3E7 222 aa32.71■■■□□ 2.83
CPSF6-205ENST00000550075 DUOX1Q9NRD9 1551 aa32.7■■■□□ 2.83
CPSF6-205ENST00000550075 ITGA6P23229 1130 aa32.7■■■□□ 2.83
CPSF6-205ENST00000550075 NSFL1CQ9UNZ2 370 aaKnown RBP32.7■■■□□ 2.83
CPSF6-205ENST00000550075 FOXO4P98177 505 aa32.69■■■□□ 2.82
CPSF6-205ENST00000550075 LTBP1Q14766 1721 aa32.68■■■□□ 2.82
CPSF6-205ENST00000550075 ANKRD18BA2A2Z9 1011 aa32.68■■■□□ 2.82
CPSF6-205ENST00000550075 BCAR3O75815 825 aa32.68■■■□□ 2.82
CPSF6-205ENST00000550075 NIM1KQ8IY84 436 aa32.68■■■□□ 2.82
CPSF6-205ENST00000550075 FRAT1Q92837 279 aaPredicted RBP32.68■■■□□ 2.82
CPSF6-205ENST00000550075 NBPF7P0C2Y1 421 aaPredicted RBP32.67■■■□□ 2.82
CPSF6-205ENST00000550075 IFIT5Q13325 482 aaKnown RBP32.67■■■□□ 2.82
CPSF6-205ENST00000550075 LMBR1LQ6UX01 489 aa32.67■■■□□ 2.82
CPSF6-205ENST00000550075 BSDC1Q9NW68 430 aaPredicted RBP32.67■■■□□ 2.82
CPSF6-205ENST00000550075 ANKIB1Q9P2G1 1089 aa32.67■■■□□ 2.82
CPSF6-205ENST00000550075 GPSM2P81274 684 aa32.66■■■□□ 2.82
CPSF6-205ENST00000550075 AOC3Q16853 763 aa32.66■■■□□ 2.82
CPSF6-205ENST00000550075 EYA3Q99504 573 aa32.66■■■□□ 2.82
CPSF6-205ENST00000550075 PODXL2Q9NZ53 605 aa32.66■■■□□ 2.82
CPSF6-205ENST00000550075 C6orf229H3BNL8 230 aa32.65■■■□□ 2.82
CPSF6-205ENST00000550075 KIAA2012Q0VF49 1180 aa32.65■■■□□ 2.82
CPSF6-205ENST00000550075 ATF7IPQ6VMQ6 1270 aa32.65■■■□□ 2.82
CPSF6-205ENST00000550075 SUCLG2Q96I99 432 aa32.65■■■□□ 2.82
CPSF6-205ENST00000550075 MPHOSPH8Q99549 860 aa32.65■■■□□ 2.82
CPSF6-205ENST00000550075 XDHP47989 1333 aa32.65■■■□□ 2.82
CPSF6-205ENST00000550075 EIF6P56537 245 aaKnown RBP32.64■■■□□ 2.82
CPSF6-205ENST00000550075 CCDC57Q2TAC2 916 aa32.64■■■□□ 2.82
CPSF6-205ENST00000550075 NMRK2Q9NPI5 230 aa32.64■■■□□ 2.82
CPSF6-205ENST00000550075 WDR90Q96KV7 1748 aa32.63■■■□□ 2.81
CPSF6-205ENST00000550075 FZD9O00144 591 aa32.63■■■□□ 2.81
CPSF6-205ENST00000550075 EPHA10Q5JZY3 1008 aa32.63■■■□□ 2.81
CPSF6-205ENST00000550075 ZKSCAN2Q63HK3 967 aa32.63■■■□□ 2.81
CPSF6-205ENST00000550075 USP44Q9H0E7 712 aa32.63■■■□□ 2.81
CPSF6-205ENST00000550075 GGA1Q9UJY5 639 aa32.63■■■□□ 2.81
CPSF6-205ENST00000550075 COL4A5P29400 1685 aa32.62■■■□□ 2.81
CPSF6-205ENST00000550075 TRIM27P14373 513 aa32.62■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 146.2 ms