RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 NMRK2Q9NPI5 230 aa15.08■□□□□ 0
HDAC4-216ENST00000544989 CCDC88AQ3V6T2 1871 aa15.08■□□□□ 0
HDAC4-216ENST00000544989 TIAM2Q8IVF5 1701 aa15.07■□□□□ 0
HDAC4-216ENST00000544989 IARSP41252 1262 aaKnown RBP15.07■□□□□ 0
HDAC4-216ENST00000544989 FSTL1Q12841 308 aa15.07■□□□□ 0
HDAC4-216ENST00000544989 SPINK5Q9NQ38 1064 aaPredicted RBP15.07■□□□□ 0
HDAC4-216ENST00000544989 ZNF277Q9NRM2 450 aaPredicted RBP15.07■□□□□ 0
HDAC4-216ENST00000544989 CDHR2Q9BYE9 1310 aa15.07■□□□□ 0
HDAC4-216ENST00000544989 PDE8AO60658 829 aa15.06■□□□□ 0
HDAC4-216ENST00000544989 CCDC152Q4G0S7 254 aa15.06■□□□□ 0
HDAC4-216ENST00000544989 DIEXFQ68CQ4 756 aaKnown RBP15.06■□□□□ 0
HDAC4-216ENST00000544989 DNAAF4Q8WXU2 420 aa15.06■□□□□ 0
HDAC4-216ENST00000544989 RRAGCQ9HB90 399 aa15.06■□□□□ 0
HDAC4-216ENST00000544989 SNED1Q8TER0 1413 aa15.06■□□□□ 0
HDAC4-216ENST00000544989 TCERG1O14776 1098 aaKnown RBP15.05■□□□□ -0
HDAC4-216ENST00000544989 OLFM4Q6UX06 510 aa15.05■□□□□ -0
HDAC4-216ENST00000544989 LINS1Q8NG48 757 aa15.05■□□□□ -0
HDAC4-216ENST00000544989 RTFDC1Q9BY42 306 aaPredicted RBP15.05■□□□□ -0
HDAC4-216ENST00000544989 IQCA1LA6NCM1 817 aa15.04■□□□□ -0
HDAC4-216ENST00000544989 NEURL1BA8MQ27 555 aa15.04■□□□□ -0
HDAC4-216ENST00000544989 IGKV5-2P06315 115 aa15.04■□□□□ -0
HDAC4-216ENST00000544989 RTL5Q5HYW3 569 aaPredicted RBP15.04■□□□□ -0
HDAC4-216ENST00000544989 DPP8Q6V1X1 898 aaPredicted RBP15.04■□□□□ -0
HDAC4-216ENST00000544989 G2E3Q7L622 706 aa15.04■□□□□ -0
HDAC4-216ENST00000544989 MPNDQ8N594 471 aa15.04■□□□□ -0
HDAC4-216ENST00000544989 LAMB2P55268 1798 aa15.03■□□□□ -0
HDAC4-216ENST00000544989 DDX60Q8IY21 1712 aaKnown RBP15.03■□□□□ -0
HDAC4-216ENST00000544989 FZD9O00144 591 aa15.03■□□□□ -0
HDAC4-216ENST00000544989 CT47B1P0C2W7 299 aaPredicted RBP15.03■□□□□ -0
HDAC4-216ENST00000544989 EIF6P56537 245 aaKnown RBP15.03■□□□□ -0
HDAC4-216ENST00000544989 RPS8P62241 208 aaKnown RBP15.03■□□□□ -0
HDAC4-216ENST00000544989 SLFN5Q08AF3 891 aa15.03■□□□□ -0
HDAC4-216ENST00000544989 LARGE2Q8N3Y3 721 aa15.03■□□□□ -0
HDAC4-216ENST00000544989 L3MBTL3Q96JM7 780 aaPredicted RBP15.03■□□□□ -0
HDAC4-216ENST00000544989 GCKRQ14397 625 aa15.02■□□□□ -0
HDAC4-216ENST00000544989 NIM1KQ8IY84 436 aa15.02■□□□□ -0
HDAC4-216ENST00000544989 SMC1BQ8NDV3 1235 aa15.02■□□□□ -0
HDAC4-216ENST00000544989 CDC5LQ99459 802 aaKnown RBP15.02■□□□□ -0
HDAC4-216ENST00000544989 H7C1W4 665 aa15.01□□□□□ -0.01
HDAC4-216ENST00000544989 PPIP5K2O43314 1243 aa15.01□□□□□ -0.01
HDAC4-216ENST00000544989 CTSWP56202 376 aa15.01□□□□□ -0.01
HDAC4-216ENST00000544989 CWF19L2Q2TBE0 894 aaKnown RBP15.01□□□□□ -0.01
HDAC4-216ENST00000544989 GPC2Q8N158 579 aa15.01□□□□□ -0.01
HDAC4-216ENST00000544989 DDNO94850 711 aaPredicted RBP15□□□□□ -0.01
HDAC4-216ENST00000544989 ANKRD18AQ8IVF6 992 aa15□□□□□ -0.01
HDAC4-216ENST00000544989 CELF1Q92879 486 aaKnown RBP15□□□□□ -0.01
HDAC4-216ENST00000544989 EYA3Q99504 573 aa15□□□□□ -0.01
HDAC4-216ENST00000544989 PLA2G12BQ9BX93 195 aa15□□□□□ -0.01
HDAC4-216ENST00000544989 RTL9Q8NET4 1388 aa14.99□□□□□ -0.01
HDAC4-216ENST00000544989 PTPRCP08575 1304 aa14.99□□□□□ -0.01
HDAC4-216ENST00000544989 ALDH1L1O75891 902 aa14.99□□□□□ -0.01
HDAC4-216ENST00000544989 KIAA2012Q0VF49 1180 aa14.99□□□□□ -0.01
HDAC4-216ENST00000544989 ALDH1L2Q3SY69 923 aa14.99□□□□□ -0.01
HDAC4-216ENST00000544989 UBE3BQ7Z3V4 1068 aa14.99□□□□□ -0.01
HDAC4-216ENST00000544989 TNS4Q8IZW8 715 aa14.99□□□□□ -0.01
HDAC4-216ENST00000544989 AOC3Q16853 763 aa14.98□□□□□ -0.01
HDAC4-216ENST00000544989 BEND3Q5T5X7 828 aa14.98□□□□□ -0.01
HDAC4-216ENST00000544989 TRMT2AQ8IZ69 625 aaKnown RBP14.98□□□□□ -0.01
HDAC4-216ENST00000544989 TTLL11Q8NHH1 800 aa14.98□□□□□ -0.01
HDAC4-216ENST00000544989 PODXL2Q9NZ53 605 aa14.98□□□□□ -0.01
HDAC4-216ENST00000544989 HACL1Q9UJ83 578 aa14.98□□□□□ -0.01
HDAC4-216ENST00000544989 ZNRF3Q9ULT6 936 aa14.98□□□□□ -0.01
HDAC4-216ENST00000544989 NSFL1CQ9UNZ2 370 aaKnown RBP14.98□□□□□ -0.01
HDAC4-216ENST00000544989 LRRC37AA6NMS7 1700 aa14.97□□□□□ -0.01
HDAC4-216ENST00000544989 ZNF541Q9H0D2 1346 aa14.97□□□□□ -0.01
HDAC4-216ENST00000544989 LMOD1P29536 600 aaPredicted RBP14.97□□□□□ -0.01
HDAC4-216ENST00000544989 HTRA3P83110 453 aa14.97□□□□□ -0.01
HDAC4-216ENST00000544989 PNMA8AQ86V59 439 aaPredicted RBP14.97□□□□□ -0.01
HDAC4-216ENST00000544989 SCN4AP35499 1836 aa14.96□□□□□ -0.01
HDAC4-216ENST00000544989 POTECB2RU33 542 aa14.96□□□□□ -0.01
HDAC4-216ENST00000544989 TNIP1Q15025 636 aa14.96□□□□□ -0.01
HDAC4-216ENST00000544989 WASHC4Q2M389 1173 aa14.96□□□□□ -0.01
HDAC4-216ENST00000544989 MIER1Q8N108 512 aa14.96□□□□□ -0.01
HDAC4-216ENST00000544989 MRPL50Q8N5N7 158 aaKnown RBP14.96□□□□□ -0.01
HDAC4-216ENST00000544989 JARID2Q92833 1246 aaPredicted RBP14.96□□□□□ -0.01
HDAC4-216ENST00000544989 SRCIN1Q9C0H9 1055 aa14.96□□□□□ -0.01
HDAC4-216ENST00000544989 SEC31BQ9NQW1 1179 aa14.96□□□□□ -0.01
HDAC4-216ENST00000544989 BSDC1Q9NW68 430 aaPredicted RBP14.96□□□□□ -0.01
HDAC4-216ENST00000544989 ANKIB1Q9P2G1 1089 aa14.96□□□□□ -0.01
HDAC4-216ENST00000544989 F6X3S4 739 aa14.95□□□□□ -0.02
HDAC4-216ENST00000544989 C6orf229H3BNL8 230 aa14.95□□□□□ -0.02
HDAC4-216ENST00000544989 IGHMBP2P38935 993 aaKnown RBP14.95□□□□□ -0.02
HDAC4-216ENST00000544989 CASP7P55210 303 aa14.95□□□□□ -0.02
HDAC4-216ENST00000544989 TAF1DQ9H5J8 278 aaPredicted RBP14.95□□□□□ -0.02
HDAC4-216ENST00000544989 C9orf78Q9NZ63 289 aaPredicted RBP14.95□□□□□ -0.02
HDAC4-216ENST00000544989 GGA1Q9UJY5 639 aa14.95□□□□□ -0.02
HDAC4-216ENST00000544989 MYH3P11055 1940 aa14.95□□□□□ -0.02
HDAC4-216ENST00000544989 XDHP47989 1333 aa14.94□□□□□ -0.02
HDAC4-216ENST00000544989 GRM8O00222 908 aa14.94□□□□□ -0.02
HDAC4-216ENST00000544989 CSF1RP07333 972 aa14.94□□□□□ -0.02
HDAC4-216ENST00000544989 GPSM2P81274 684 aa14.94□□□□□ -0.02
HDAC4-216ENST00000544989 SLC4A10Q6U841 1118 aa14.94□□□□□ -0.02
HDAC4-216ENST00000544989 LDHDQ86WU2 507 aa14.94□□□□□ -0.02
HDAC4-216ENST00000544989 SSH1Q8WYL5 1049 aa14.94□□□□□ -0.02
HDAC4-216ENST00000544989 CDCA7LQ96GN5 454 aa14.94□□□□□ -0.02
HDAC4-216ENST00000544989 CCDC85AQ96PX6 553 aaPredicted RBP14.94□□□□□ -0.02
HDAC4-216ENST00000544989 ZC3H12CQ9C0D7 883 aaKnown RBP14.94□□□□□ -0.02
HDAC4-216ENST00000544989 GREM2Q9H772 168 aa14.94□□□□□ -0.02
HDAC4-216ENST00000544989 GJA3Q9Y6H8 435 aa14.94□□□□□ -0.02
HDAC4-216ENST00000544989 ATP2B4P23634 1241 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms