RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 ZBTB7BO15156 539 aaPredicted RBP15.28■□□□□ 0.04
DDX55-210ENST00000543016 CSF1RP07333 972 aa15.28■□□□□ 0.04
DDX55-210ENST00000543016 CTSWP56202 376 aa15.28■□□□□ 0.04
DDX55-210ENST00000543016 AAMPQ13685 434 aa15.28■□□□□ 0.04
DDX55-210ENST00000543016 DDX46Q7L014 1031 aaKnown RBP15.28■□□□□ 0.04
DDX55-210ENST00000543016 CCDC24Q8N4L8 307 aa15.28■□□□□ 0.04
DDX55-210ENST00000543016 PIM2Q9P1W9 311 aa15.28■□□□□ 0.04
DDX55-210ENST00000543016 SUPT16HQ9Y5B9 1047 aaKnown RBP15.28■□□□□ 0.04
DDX55-210ENST00000543016 GNAI2P04899 355 aa15.27■□□□□ 0.04
DDX55-210ENST00000543016 DPEP1P16444 411 aa15.27■□□□□ 0.04
DDX55-210ENST00000543016 RABL6Q3YEC7 729 aaPredicted RBP15.27■□□□□ 0.04
DDX55-210ENST00000543016 TMC4Q7Z404 712 aa15.27■□□□□ 0.04
DDX55-210ENST00000543016 TTLL11Q8NHH1 800 aa15.27■□□□□ 0.04
DDX55-210ENST00000543016 JARID2Q92833 1246 aaPredicted RBP15.27■□□□□ 0.04
DDX55-210ENST00000543016 MEIS3Q99687 375 aa15.27■□□□□ 0.04
DDX55-210ENST00000543016 BBOX1O75936 387 aa15.26■□□□□ 0.03
DDX55-210ENST00000543016 FOXO4P98177 505 aa15.26■□□□□ 0.03
DDX55-210ENST00000543016 C1QBPQ07021 282 aaKnown RBP15.26■□□□□ 0.03
DDX55-210ENST00000543016 TTLL6Q8N841 843 aa15.26■□□□□ 0.03
DDX55-210ENST00000543016 COG6Q9Y2V7 657 aa15.26■□□□□ 0.03
DDX55-210ENST00000543016 A0A0G2JLW4 131 aa15.25■□□□□ 0.03
DDX55-210ENST00000543016 KCNA3P22001 575 aa15.25■□□□□ 0.03
DDX55-210ENST00000543016 CHRNA5P30532 468 aa15.25■□□□□ 0.03
DDX55-210ENST00000543016 ZNF622Q969S3 477 aaKnown RBP eCLIP15.25■□□□□ 0.03
DDX55-210ENST00000543016 SUCLG2Q96I99 432 aa15.25■□□□□ 0.03
DDX55-210ENST00000543016 CDC5LQ99459 802 aaKnown RBP15.25■□□□□ 0.03
DDX55-210ENST00000543016 ANKRD31Q8N7Z5 1873 aa15.25■□□□□ 0.03
DDX55-210ENST00000543016 LAMB2P55268 1798 aa15.24■□□□□ 0.03
DDX55-210ENST00000543016 GRIPAP1Q4V328 841 aa15.24■□□□□ 0.03
DDX55-210ENST00000543016 DALRD3Q5D0E6 543 aaKnown RBP15.24■□□□□ 0.03
DDX55-210ENST00000543016 C20orf194Q5TEA3 1177 aa15.24■□□□□ 0.03
DDX55-210ENST00000543016 CC2D2BQ6DHV5 1058 aa15.24■□□□□ 0.03
DDX55-210ENST00000543016 LMBR1LQ6UX01 489 aa15.24■□□□□ 0.03
DDX55-210ENST00000543016 C3orf67Q6ZVT6 689 aa15.24■□□□□ 0.03
DDX55-210ENST00000543016 NLGN2Q8NFZ4 835 aa15.24■□□□□ 0.03
DDX55-210ENST00000543016 KAZALD1Q96I82 304 aa15.24■□□□□ 0.03
DDX55-210ENST00000543016 ANKRD18BA2A2Z9 1011 aa15.23■□□□□ 0.03
DDX55-210ENST00000543016 IFIT5Q13325 482 aaKnown RBP15.23■□□□□ 0.03
DDX55-210ENST00000543016 MTX1Q13505 466 aa15.23■□□□□ 0.03
DDX55-210ENST00000543016 GRAPQ13588 217 aa15.23■□□□□ 0.03
DDX55-210ENST00000543016 CCDC57Q2TAC2 916 aa15.23■□□□□ 0.03
DDX55-210ENST00000543016 SOGA3Q5TF21 947 aa15.23■□□□□ 0.03
DDX55-210ENST00000543016 GRAPLQ8TC17 118 aaPredicted RBP15.23■□□□□ 0.03
DDX55-210ENST00000543016 TMX4Q9H1E5 349 aaPredicted RBP15.23■□□□□ 0.03
DDX55-210ENST00000543016 BICC1Q9H694 974 aaKnown RBP15.23■□□□□ 0.03
DDX55-210ENST00000543016 ZBTB40Q9NUA8 1239 aa15.23■□□□□ 0.03
DDX55-210ENST00000543016 LRRFIP2Q9Y608 721 aaKnown RBP15.23■□□□□ 0.03
DDX55-210ENST00000543016 DDX60Q8IY21 1712 aaKnown RBP15.23■□□□□ 0.03
DDX55-210ENST00000543016 RPS8P62241 208 aaKnown RBP15.22■□□□□ 0.03
DDX55-210ENST00000543016 EPHA10Q5JZY3 1008 aa15.22■□□□□ 0.03
DDX55-210ENST00000543016 ANKRD44Q8N8A2 993 aa15.22■□□□□ 0.03
DDX55-210ENST00000543016 ITGA6P23229 1130 aa15.21■□□□□ 0.03
DDX55-210ENST00000543016 IGHMBP2P38935 993 aaKnown RBP15.21■□□□□ 0.03
DDX55-210ENST00000543016 ANKRD18AQ8IVF6 992 aa15.21■□□□□ 0.03
DDX55-210ENST00000543016 RPAP2Q8IXW5 612 aaPredicted RBP15.21■□□□□ 0.03
DDX55-210ENST00000543016 GREM2Q9H772 168 aa15.21■□□□□ 0.03
DDX55-210ENST00000543016 CHMP3Q9Y3E7 222 aa15.21■□□□□ 0.03
DDX55-210ENST00000543016 TNRC6CQ9HCJ0 1690 aaKnown RBP15.21■□□□□ 0.03
DDX55-210ENST00000543016 MYH3P11055 1940 aa15.2■□□□□ 0.02
DDX55-210ENST00000543016 FAM161AQ3B820 660 aa15.2■□□□□ 0.02
DDX55-210ENST00000543016 PRPF40BQ6NWY9 871 aaKnown RBP15.2■□□□□ 0.02
DDX55-210ENST00000543016 SP8Q8IXZ3 490 aa15.2■□□□□ 0.02
DDX55-210ENST00000543016 FBXO3Q9UK99 471 aa15.2■□□□□ 0.02
DDX55-210ENST00000543016 DLEC1Q9Y238 1755 aa15.19■□□□□ 0.02
DDX55-210ENST00000543016 GRIN3BO60391 1043 aa15.19■□□□□ 0.02
DDX55-210ENST00000543016 ATP8B2P98198 1209 aa15.19■□□□□ 0.02
DDX55-210ENST00000543016 TAF7LQ5H9L4 462 aa15.19■□□□□ 0.02
DDX55-210ENST00000543016 MPHOSPH8Q99549 860 aa15.19■□□□□ 0.02
DDX55-210ENST00000543016 BSDC1Q9NW68 430 aaPredicted RBP15.19■□□□□ 0.02
DDX55-210ENST00000543016 ATP6V0A2Q9Y487 856 aa15.19■□□□□ 0.02
DDX55-210ENST00000543016 KIAA1551Q9HCM1 1747 aa15.19■□□□□ 0.02
DDX55-210ENST00000543016 PPEF1O14829 653 aaPredicted RBP15.18■□□□□ 0.02
DDX55-210ENST00000543016 HMMRO75330 724 aa15.18■□□□□ 0.02
DDX55-210ENST00000543016 C7orf43Q8WVR3 580 aa15.18■□□□□ 0.02
DDX55-210ENST00000543016 CELF1Q92879 486 aaKnown RBP15.18■□□□□ 0.02
DDX55-210ENST00000543016 CCDC85AQ96PX6 553 aaPredicted RBP15.18■□□□□ 0.02
DDX55-210ENST00000543016 CRBNQ96SW2 442 aa15.18■□□□□ 0.02
DDX55-210ENST00000543016 SEC31BQ9NQW1 1179 aa15.18■□□□□ 0.02
DDX55-210ENST00000543016 BCS1LQ9Y276 419 aa15.18■□□□□ 0.02
DDX55-210ENST00000543016 COL11A2P13942 1736 aaPredicted RBP15.17■□□□□ 0.02
DDX55-210ENST00000543016 SRGAP3O43295 1099 aa15.17■□□□□ 0.02
DDX55-210ENST00000543016 RTKN2Q8IZC4 609 aa15.17■□□□□ 0.02
DDX55-210ENST00000543016 COPRSQ9NQ92 184 aa15.17■□□□□ 0.02
DDX55-210ENST00000543016 GPR162Q16538 588 aa15.16■□□□□ 0.02
DDX55-210ENST00000543016 CCDC93Q567U6 631 aa15.16■□□□□ 0.02
DDX55-210ENST00000543016 CEP85Q6P2H3 762 aa15.16■□□□□ 0.02
DDX55-210ENST00000543016 SSH3Q8TE77 659 aa15.16■□□□□ 0.02
DDX55-210ENST00000543016 U3KPZ7 1027 aaPredicted RBP15.16■□□□□ 0.02
DDX55-210ENST00000543016 BRCA1P38398 1863 aaKnown RBP15.15■□□□□ 0.02
DDX55-210ENST00000543016 CIAO1O76071 339 aa15.15■□□□□ 0.02
DDX55-210ENST00000543016 RFX5P48382 616 aaPredicted RBP15.15■□□□□ 0.02
DDX55-210ENST00000543016 POLA2Q14181 598 aa15.15■□□□□ 0.02
DDX55-210ENST00000543016 LDHAL6AQ6ZMR3 332 aa15.15■□□□□ 0.02
DDX55-210ENST00000543016 ANKRD2Q9GZV1 360 aa15.15■□□□□ 0.02
DDX55-210ENST00000543016 C21orf2O43822 256 aa15.14■□□□□ 0.01
DDX55-210ENST00000543016 NEFLP07196 543 aa15.14■□□□□ 0.01
DDX55-210ENST00000543016 PTPN12Q05209 780 aaKnown RBP15.14■□□□□ 0.01
DDX55-210ENST00000543016 C1orf115Q9H7X2 142 aa15.14■□□□□ 0.01
DDX55-210ENST00000543016 CNNM1Q9NRU3 951 aa15.14■□□□□ 0.01
DDX55-210ENST00000543016 MROH5Q6ZUA9 1318 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms