RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 TPTE2Q6XPS3 522 aa6.52□□□□□ -1.37
LIMS1-214ENST00000542845 CDC37L1Q7L3B6 337 aa6.52□□□□□ -1.37
LIMS1-214ENST00000542845 ZNF467Q7Z7K2 595 aaPredicted RBP6.52□□□□□ -1.37
LIMS1-214ENST00000542845 C2orf69Q8N8R5 385 aa6.52□□□□□ -1.37
LIMS1-214ENST00000542845 SLC17A8Q8NDX2 589 aa6.52□□□□□ -1.37
LIMS1-214ENST00000542845 HHIPL1Q96JK4 782 aa6.52□□□□□ -1.37
LIMS1-214ENST00000542845 GPRC5DQ9NZD1 345 aa6.52□□□□□ -1.37
LIMS1-214ENST00000542845 PPIP5K2O43314 1243 aa6.51□□□□□ -1.37
LIMS1-214ENST00000542845 TBC1D8O95759 1140 aa6.51□□□□□ -1.37
LIMS1-214ENST00000542845 IL6STP40189 918 aaPredicted RBP6.51□□□□□ -1.37
LIMS1-214ENST00000542845 GMPSP49915 693 aaPredicted RBP6.51□□□□□ -1.37
LIMS1-214ENST00000542845 FXR1P51114 621 aaKnown RBP eCLIP6.51□□□□□ -1.37
LIMS1-214ENST00000542845 AOC3Q16853 763 aa6.51□□□□□ -1.37
LIMS1-214ENST00000542845 CDCA8Q53HL2 280 aa6.51□□□□□ -1.37
LIMS1-214ENST00000542845 MS4A3Q96HJ5 214 aa6.51□□□□□ -1.37
LIMS1-214ENST00000542845 CSRNP1Q96S65 589 aa6.51□□□□□ -1.37
LIMS1-214ENST00000542845 PSMD1Q99460 953 aa6.51□□□□□ -1.37
LIMS1-214ENST00000542845 SAGE1Q9NXZ1 904 aa6.51□□□□□ -1.37
LIMS1-214ENST00000542845 TIMELESSQ9UNS1 1208 aa6.51□□□□□ -1.37
LIMS1-214ENST00000542845 NIP7Q9Y221 180 aaKnown RBP eCLIP6.51□□□□□ -1.37
LIMS1-214ENST00000542845 GTF3C3Q9Y5Q9 886 aa6.51□□□□□ -1.37
LIMS1-214ENST00000542845 COL4A5P29400 1685 aa6.51□□□□□ -1.37
LIMS1-214ENST00000542845 SCN7AQ01118 1682 aa6.51□□□□□ -1.37
LIMS1-214ENST00000542845 POLR2AP24928 1970 aaKnown RBP6.51□□□□□ -1.37
LIMS1-214ENST00000542845 BCORQ6W2J9 1755 aa6.5□□□□□ -1.37
LIMS1-214ENST00000542845 FAM155AB1AL88 458 aaPredicted RBP6.5□□□□□ -1.37
LIMS1-214ENST00000542845 HMOX1P09601 288 aa6.5□□□□□ -1.37
LIMS1-214ENST00000542845 HIRAP54198 1017 aaPredicted RBP6.5□□□□□ -1.37
LIMS1-214ENST00000542845 RBM26Q5T8P6 1007 aaKnown RBP6.5□□□□□ -1.37
LIMS1-214ENST00000542845 SLC51AQ86UW1 340 aa6.5□□□□□ -1.37
LIMS1-214ENST00000542845 RPGRQ92834 1020 aaKnown RBP6.5□□□□□ -1.37
LIMS1-214ENST00000542845 CCDC102AQ96A19 550 aa6.5□□□□□ -1.37
LIMS1-214ENST00000542845 ZNF496Q96IT1 587 aaPredicted RBP6.5□□□□□ -1.37
LIMS1-214ENST00000542845 TEX13AQ9BXU3 409 aaPredicted RBP6.5□□□□□ -1.37
LIMS1-214ENST00000542845 GBA2Q9HCG7 927 aaPredicted RBP6.5□□□□□ -1.37
LIMS1-214ENST00000542845 SCUBE2Q9NQ36 999 aa6.5□□□□□ -1.37
LIMS1-214ENST00000542845 NPC1L1Q9UHC9 1359 aa6.49□□□□□ -1.37
LIMS1-214ENST00000542845 SHTN1A0MZ66 631 aa6.49□□□□□ -1.37
LIMS1-214ENST00000542845 H7C1D1 291 aa6.49□□□□□ -1.37
LIMS1-214ENST00000542845 RAD17O75943 681 aa6.49□□□□□ -1.37
LIMS1-214ENST00000542845 CXCL9Q07325 125 aa6.49□□□□□ -1.37
LIMS1-214ENST00000542845 TEFQ10587 303 aa6.49□□□□□ -1.37
LIMS1-214ENST00000542845 PKN2Q16513 984 aaKnown RBP6.49□□□□□ -1.37
LIMS1-214ENST00000542845 NUTM1Q86Y26 1132 aa6.49□□□□□ -1.37
LIMS1-214ENST00000542845 TRPM4Q8TD43 1214 aa6.49□□□□□ -1.37
LIMS1-214ENST00000542845 ZNF296Q8WUU4 475 aaPredicted RBP6.49□□□□□ -1.37
LIMS1-214ENST00000542845 TMX4Q9H1E5 349 aaPredicted RBP6.49□□□□□ -1.37
LIMS1-214ENST00000542845 CNOT7Q9UIV1 285 aaKnown RBP6.49□□□□□ -1.37
LIMS1-214ENST00000542845 COLQQ9Y215 455 aaPredicted RBP6.49□□□□□ -1.37
LIMS1-214ENST00000542845 ZNF652Q9Y2D9 606 aa6.49□□□□□ -1.37
LIMS1-214ENST00000542845 HEG1Q9ULI3 1381 aa6.48□□□□□ -1.37
LIMS1-214ENST00000542845 KLRG2A4D1S0 409 aaPredicted RBP6.48□□□□□ -1.37
LIMS1-214ENST00000542845 ADM5C9JUS6 153 aa6.48□□□□□ -1.37
LIMS1-214ENST00000542845 PDAP1Q13442 181 aaKnown RBP6.48□□□□□ -1.37
LIMS1-214ENST00000542845 MTHFSDQ2M296 383 aaKnown RBP6.48□□□□□ -1.37
LIMS1-214ENST00000542845 TBC1D10BQ4KMP7 808 aaPredicted RBP6.48□□□□□ -1.37
LIMS1-214ENST00000542845 CC2D2BQ6DHV5 1058 aa6.48□□□□□ -1.37
LIMS1-214ENST00000542845 ZNF790Q6PG37 636 aa6.48□□□□□ -1.37
LIMS1-214ENST00000542845 SAMD7Q7Z3H4 446 aa6.48□□□□□ -1.37
LIMS1-214ENST00000542845 KRT26Q7Z3Y9 468 aa6.48□□□□□ -1.37
LIMS1-214ENST00000542845 CDAN1Q8IWY9 1227 aa6.48□□□□□ -1.37
LIMS1-214ENST00000542845 NGEFQ8N5V2 710 aa6.48□□□□□ -1.37
LIMS1-214ENST00000542845 KCNV2Q8TDN2 545 aa6.48□□□□□ -1.37
LIMS1-214ENST00000542845 DCPSQ96C86 337 aaKnown RBP6.48□□□□□ -1.37
LIMS1-214ENST00000542845 PGAP2Q9UHJ9 254 aa6.48□□□□□ -1.37
LIMS1-214ENST00000542845 ZNRF3Q9ULT6 936 aa6.48□□□□□ -1.37
LIMS1-214ENST00000542845 USP16Q9Y5T5 823 aa6.48□□□□□ -1.37
LIMS1-214ENST00000542845 UBR2Q8IWV8 1755 aa6.47□□□□□ -1.37
LIMS1-214ENST00000542845 POTEFA5A3E0 1075 aa6.47□□□□□ -1.37
LIMS1-214ENST00000542845 PPEF1O14829 653 aaPredicted RBP6.47□□□□□ -1.37
LIMS1-214ENST00000542845 TNIP1Q15025 636 aa6.47□□□□□ -1.37
LIMS1-214ENST00000542845 HLFQ16534 295 aa6.47□□□□□ -1.37
LIMS1-214ENST00000542845 FBXO46Q6PJ61 603 aaPredicted RBP6.47□□□□□ -1.37
LIMS1-214ENST00000542845 CLEC4GQ6UXB4 293 aa6.47□□□□□ -1.37
LIMS1-214ENST00000542845 MORC1Q86VD1 984 aa6.47□□□□□ -1.37
LIMS1-214ENST00000542845 ZC3H15Q8WU90 426 aaKnown RBP6.47□□□□□ -1.37
LIMS1-214ENST00000542845 RBM17Q96I25 401 aaKnown RBP6.47□□□□□ -1.37
LIMS1-214ENST00000542845 FMNL2Q96PY5 1086 aa6.47□□□□□ -1.37
LIMS1-214ENST00000542845 PRAMEF22A3QJZ6 481 aa6.46□□□□□ -1.38
LIMS1-214ENST00000542845 KCNQ3O43525 872 aa6.46□□□□□ -1.38
LIMS1-214ENST00000542845 SLC10A3P09131 477 aa6.46□□□□□ -1.38
LIMS1-214ENST00000542845 IL13P35225 146 aa6.46□□□□□ -1.38
LIMS1-214ENST00000542845 MKRN3Q13064 507 aaKnown RBP6.46□□□□□ -1.38
LIMS1-214ENST00000542845 MICALL2Q8IY33 904 aa6.46□□□□□ -1.38
LIMS1-214ENST00000542845 PCDHB8Q9UN66 801 aa6.46□□□□□ -1.38
LIMS1-214ENST00000542845 PCDHB13Q9Y5F0 798 aa6.46□□□□□ -1.38
LIMS1-214ENST00000542845 MRC1P22897 1456 aa6.46□□□□□ -1.38
LIMS1-214ENST00000542845 PAPPA2Q9BXP8 1791 aa6.45□□□□□ -1.38
LIMS1-214ENST00000542845 BTBD11A6QL63 1104 aa6.45□□□□□ -1.38
LIMS1-214ENST00000542845 GPR25O00155 361 aa6.45□□□□□ -1.38
LIMS1-214ENST00000542845 EN2P19622 333 aaPredicted RBP6.45□□□□□ -1.38
LIMS1-214ENST00000542845 ATN1P54259 1190 aaPredicted RBP6.45□□□□□ -1.38
LIMS1-214ENST00000542845 GRIPAP1Q4V328 841 aa6.45□□□□□ -1.38
LIMS1-214ENST00000542845 DPP8Q6V1X1 898 aaPredicted RBP6.45□□□□□ -1.38
LIMS1-214ENST00000542845 ERICH6Q7L0X2 663 aa6.45□□□□□ -1.38
LIMS1-214ENST00000542845 NYXQ9GZU5 481 aa6.45□□□□□ -1.38
LIMS1-214ENST00000542845 FKTNO75072 461 aa6.44□□□□□ -1.38
LIMS1-214ENST00000542845 EGFRP00533 1210 aa6.44□□□□□ -1.38
LIMS1-214ENST00000542845 GPTP24298 496 aa6.44□□□□□ -1.38
LIMS1-214ENST00000542845 TTLL12Q14166 644 aaPredicted RBP6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms