RNA–Protein interactions for RNA: ENST00000542310.1

VPS33A-206, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 756 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-206ENST00000542310 IL16Q14005 1332 aa20.19■□□□□ 0.82
VPS33A-206ENST00000542310 MYH3P11055 1940 aa20.19■□□□□ 0.82
VPS33A-206ENST00000542310 ZNF316A6NFI3 1004 aaPredicted RBP20.18■□□□□ 0.82
VPS33A-206ENST00000542310 ATP5J2-PTCD1G3V325 749 aa20.18■□□□□ 0.82
VPS33A-206ENST00000542310 HSP90B1P14625 803 aaKnown RBP20.18■□□□□ 0.82
VPS33A-206ENST00000542310 C8orf58Q8NAV2 365 aa20.18■□□□□ 0.82
VPS33A-206ENST00000542310 FAM89AQ96GI7 184 aa20.18■□□□□ 0.82
VPS33A-206ENST00000542310 ANP32CO43423 234 aa20.17■□□□□ 0.82
VPS33A-206ENST00000542310 DDX58O95786 925 aaKnown RBP20.17■□□□□ 0.82
VPS33A-206ENST00000542310 LMOD1P29536 600 aaPredicted RBP20.17■□□□□ 0.82
VPS33A-206ENST00000542310 AOC3Q16853 763 aa20.17■□□□□ 0.82
VPS33A-206ENST00000542310 EAPPQ56P03 285 aaPredicted RBP20.17■□□□□ 0.82
VPS33A-206ENST00000542310 MPNDQ8N594 471 aa20.17■□□□□ 0.82
VPS33A-206ENST00000542310 ZBTB38Q8NAP3 1195 aaPredicted RBP20.17■□□□□ 0.82
VPS33A-206ENST00000542310 PHAXQ9H814 394 aaKnown RBP20.17■□□□□ 0.82
VPS33A-206ENST00000542310 ELL2O00472 640 aaPredicted RBP20.16■□□□□ 0.82
VPS33A-206ENST00000542310 KIAA2012Q0VF49 1180 aa20.16■□□□□ 0.82
VPS33A-206ENST00000542310 WWC1Q8IX03 1113 aa20.16■□□□□ 0.82
VPS33A-206ENST00000542310 CCDC191Q8NCU4 936 aa20.16■□□□□ 0.82
VPS33A-206ENST00000542310 MRS2Q9HD23 443 aa20.16■□□□□ 0.82
VPS33A-206ENST00000542310 PCNTO95613 3336 aa20.16■□□□□ 0.82
VPS33A-206ENST00000542310 COL4A1P02462 1669 aa20.16■□□□□ 0.82
VPS33A-206ENST00000542310 IRS4O14654 1257 aaPredicted RBP20.15■□□□□ 0.82
VPS33A-206ENST00000542310 SCNN1DP51172 638 aa20.15■□□□□ 0.82
VPS33A-206ENST00000542310 ZNRF3Q9ULT6 936 aa20.15■□□□□ 0.82
VPS33A-206ENST00000542310 GJA3Q9Y6H8 435 aa20.15■□□□□ 0.82
VPS33A-206ENST00000542310 CDHR2Q9BYE9 1310 aa20.15■□□□□ 0.82
VPS33A-206ENST00000542310 TRPM7Q96QT4 1865 aa20.14■□□□□ 0.81
VPS33A-206ENST00000542310 ITGBL1O95965 494 aaPredicted RBP20.13■□□□□ 0.81
VPS33A-206ENST00000542310 PCCAP05165 728 aaPredicted RBP20.13■□□□□ 0.81
VPS33A-206ENST00000542310 IFFO2Q5TF58 517 aa20.13■□□□□ 0.81
VPS33A-206ENST00000542310 TSPYL6Q8N831 410 aa20.13■□□□□ 0.81
VPS33A-206ENST00000542310 TSR2Q969E8 191 aaKnown RBP20.13■□□□□ 0.81
VPS33A-206ENST00000542310 MYD88Q99836 296 aa20.13■□□□□ 0.81
VPS33A-206ENST00000542310 METTL22Q9BUU2 404 aaPredicted RBP20.13■□□□□ 0.81
VPS33A-206ENST00000542310 CELF1Q92879 486 aaKnown RBP20.12■□□□□ 0.81
VPS33A-206ENST00000542310 STK31Q9BXU1 1019 aa20.12■□□□□ 0.81
VPS33A-206ENST00000542310 CWC25Q9NXE8 425 aaPredicted RBP20.12■□□□□ 0.81
VPS33A-206ENST00000542310 CLEC11AQ9Y240 323 aa20.12■□□□□ 0.81
VPS33A-206ENST00000542310 CNTNAP1P78357 1384 aa20.11■□□□□ 0.81
VPS33A-206ENST00000542310 USP50Q70EL3 339 aaPredicted RBP20.11■□□□□ 0.81
VPS33A-206ENST00000542310 TMEM88BA6NKF7 163 aa20.1■□□□□ 0.81
VPS33A-206ENST00000542310 CXCL9Q07325 125 aa20.1■□□□□ 0.81
VPS33A-206ENST00000542310 TWISTNBQ3B726 338 aaPredicted RBP20.1■□□□□ 0.81
VPS33A-206ENST00000542310 ZNF428Q96B54 188 aa20.1■□□□□ 0.81
VPS33A-206ENST00000542310 GPRC5DQ9NZD1 345 aa20.1■□□□□ 0.81
VPS33A-206ENST00000542310 PSME4Q14997 1843 aa20.1■□□□□ 0.81
VPS33A-206ENST00000542310 PDE8AO60658 829 aa20.09■□□□□ 0.81
VPS33A-206ENST00000542310 EPS15P42566 896 aa20.09■□□□□ 0.81
VPS33A-206ENST00000542310 TNIP1Q15025 636 aa20.09■□□□□ 0.81
VPS33A-206ENST00000542310 CCDC152Q4G0S7 254 aa20.09■□□□□ 0.81
VPS33A-206ENST00000542310 RTL5Q5HYW3 569 aaPredicted RBP20.09■□□□□ 0.81
VPS33A-206ENST00000542310 CIAPIN1Q6FI81 312 aa20.09■□□□□ 0.81
VPS33A-206ENST00000542310 KSR2Q6VAB6 950 aa20.09■□□□□ 0.81
VPS33A-206ENST00000542310 CNTROBQ8N137 903 aa20.09■□□□□ 0.81
VPS33A-206ENST00000542310 ADARB2Q9NS39 739 aaKnown RBP20.09■□□□□ 0.81
VPS33A-206ENST00000542310 MAP3K2Q9Y2U5 619 aa20.09■□□□□ 0.81
VPS33A-206ENST00000542310 FANCIQ9NVI1 1328 aa20.08■□□□□ 0.81
VPS33A-206ENST00000542310 RPS8P62241 208 aaKnown RBP20.08■□□□□ 0.81
VPS33A-206ENST00000542310 MAP1SQ66K74 1059 aaPredicted RBP20.08■□□□□ 0.81
VPS33A-206ENST00000542310 WDR63Q8IWG1 891 aa20.08■□□□□ 0.81
VPS33A-206ENST00000542310 SPEF2Q9C093 1822 aa20.08■□□□□ 0.8
VPS33A-206ENST00000542310 THSD7BQ9C0I4 1608 aa20.07■□□□□ 0.8
VPS33A-206ENST00000542310 NEXNQ0ZGT2 675 aa20.07■□□□□ 0.8
VPS33A-206ENST00000542310 EYA3Q99504 573 aa20.07■□□□□ 0.8
VPS33A-206ENST00000542310 PI4KAP2A4QPH2 592 aa20.06■□□□□ 0.8
VPS33A-206ENST00000542310 WASHC4Q2M389 1173 aa20.06■□□□□ 0.8
VPS33A-206ENST00000542310 PI4KAP1Q8N8J0 262 aa20.06■□□□□ 0.8
VPS33A-206ENST00000542310 PODXL2Q9NZ53 605 aa20.06■□□□□ 0.8
VPS33A-206ENST00000542310 NSFL1CQ9UNZ2 370 aaKnown RBP20.06■□□□□ 0.8
VPS33A-206ENST00000542310 YDJCA8MPS7 323 aa20.05■□□□□ 0.8
VPS33A-206ENST00000542310 IGKV5-2P06315 115 aa20.05■□□□□ 0.8
VPS33A-206ENST00000542310 HSPA1AP0DMV8 641 aaKnown RBP20.05■□□□□ 0.8
VPS33A-206ENST00000542310 HSPA1BP0DMV9 641 aaKnown RBP20.05■□□□□ 0.8
VPS33A-206ENST00000542310 GMPSP49915 693 aaPredicted RBP20.05■□□□□ 0.8
VPS33A-206ENST00000542310 GPSM2P81274 684 aa20.05■□□□□ 0.8
VPS33A-206ENST00000542310 MKRN1Q9UHC7 482 aaKnown RBP20.05■□□□□ 0.8
VPS33A-206ENST00000542310 RTL9Q8NET4 1388 aa20.05■□□□□ 0.8
VPS33A-206ENST00000542310 SCN9AQ15858 1988 aa20.04■□□□□ 0.8
VPS33A-206ENST00000542310 POLLQ9UGP5 575 aa20.04■□□□□ 0.8
VPS33A-206ENST00000542310 ZNF609O15014 1411 aa20.03■□□□□ 0.8
VPS33A-206ENST00000542310 RASSF10A6NK89 507 aa20.03■□□□□ 0.8
VPS33A-206ENST00000542310 NEURL1BA8MQ27 555 aa20.03■□□□□ 0.8
VPS33A-206ENST00000542310 C6orf229H3BNL8 230 aa20.03■□□□□ 0.8
VPS33A-206ENST00000542310 RAD17O75943 681 aa20.03■□□□□ 0.8
VPS33A-206ENST00000542310 CTSWP56202 376 aa20.03■□□□□ 0.8
VPS33A-206ENST00000542310 TBC1D16Q8TBP0 767 aa20.03■□□□□ 0.8
VPS33A-206ENST00000542310 BCL2L13Q9BXK5 485 aa20.03■□□□□ 0.8
VPS33A-206ENST00000542310 SEC31BQ9NQW1 1179 aa20.03■□□□□ 0.8
VPS33A-206ENST00000542310 SLC4A2P04920 1241 aa20.02■□□□□ 0.8
VPS33A-206ENST00000542310 FLIIQ13045 1269 aa20.02■□□□□ 0.8
VPS33A-206ENST00000542310 CDC5LQ99459 802 aaKnown RBP20.02■□□□□ 0.8
VPS33A-206ENST00000542310 ECE2O60344 883 aa20.01■□□□□ 0.79
VPS33A-206ENST00000542310 RPS12P25398 132 aaKnown RBP20.01■□□□□ 0.79
VPS33A-206ENST00000542310 G2E3Q7L622 706 aa20.01■□□□□ 0.79
VPS33A-206ENST00000542310 ANKRD18AQ8IVF6 992 aa20.01■□□□□ 0.79
VPS33A-206ENST00000542310 ZC3H15Q8WU90 426 aaKnown RBP20.01■□□□□ 0.79
VPS33A-206ENST00000542310 DPF2Q92785 391 aa20.01■□□□□ 0.79
VPS33A-206ENST00000542310 PGAP2Q9UHJ9 254 aa20.01■□□□□ 0.79
VPS33A-206ENST00000542310 GGA1Q9UJY5 639 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms