RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 CDHR2Q9BYE9 1310 aa18.19■□□□□ 0.5
USP28-209ENST00000540925 NEURL1BA8MQ27 555 aa18.18■□□□□ 0.5
USP28-209ENST00000540925 POTECB2RU33 542 aa18.18■□□□□ 0.5
USP28-209ENST00000540925 DDX46Q7L014 1031 aaKnown RBP18.18■□□□□ 0.5
USP28-209ENST00000540925 SP8Q8IXZ3 490 aa18.18■□□□□ 0.5
USP28-209ENST00000540925 RTFDC1Q9BY42 306 aaPredicted RBP18.18■□□□□ 0.5
USP28-209ENST00000540925 IARSP41252 1262 aaKnown RBP18.17■□□□□ 0.5
USP28-209ENST00000540925 CWF19L2Q2TBE0 894 aaKnown RBP18.17■□□□□ 0.5
USP28-209ENST00000540925 MIER1Q8N108 512 aa18.17■□□□□ 0.5
USP28-209ENST00000540925 DUOX1Q9NRD9 1551 aa18.17■□□□□ 0.5
USP28-209ENST00000540925 LTBP1Q14766 1721 aa18.16■□□□□ 0.5
USP28-209ENST00000540925 FZD9O00144 591 aa18.16■□□□□ 0.5
USP28-209ENST00000540925 FKBP5Q13451 457 aaPredicted RBP18.16■□□□□ 0.5
USP28-209ENST00000540925 TMC4Q7Z404 712 aa18.16■□□□□ 0.5
USP28-209ENST00000540925 DNAAF4Q8WXU2 420 aa18.16■□□□□ 0.5
USP28-209ENST00000540925 CELF1Q92879 486 aaKnown RBP18.16■□□□□ 0.5
USP28-209ENST00000540925 CDCA7LQ96GN5 454 aa18.16■□□□□ 0.5
USP28-209ENST00000540925 RRAGCQ9HB90 399 aa18.16■□□□□ 0.5
USP28-209ENST00000540925 H7C1W4 665 aa18.15■□□□□ 0.5
USP28-209ENST00000540925 PDE8AO60658 829 aa18.15■□□□□ 0.5
USP28-209ENST00000540925 TOMM70O94826 608 aa18.15■□□□□ 0.5
USP28-209ENST00000540925 HSP90B1P14625 803 aaKnown RBP18.15■□□□□ 0.5
USP28-209ENST00000540925 CASP7P55210 303 aa18.15■□□□□ 0.5
USP28-209ENST00000540925 NEXNQ0ZGT2 675 aa18.15■□□□□ 0.5
USP28-209ENST00000540925 LINS1Q8NG48 757 aa18.15■□□□□ 0.5
USP28-209ENST00000540925 JARID2Q92833 1246 aaPredicted RBP18.15■□□□□ 0.5
USP28-209ENST00000540925 GCKRQ14397 625 aa18.14■□□□□ 0.49
USP28-209ENST00000540925 ZNF541Q9H0D2 1346 aa18.14■□□□□ 0.49
USP28-209ENST00000540925 DPY19L2Q6NUT2 758 aa18.13■□□□□ 0.49
USP28-209ENST00000540925 RBM46Q8TBY0 533 aaKnown RBP18.13■□□□□ 0.49
USP28-209ENST00000540925 L3MBTL3Q96JM7 780 aaPredicted RBP18.13■□□□□ 0.49
USP28-209ENST00000540925 VPS33BQ9H267 617 aa18.13■□□□□ 0.49
USP28-209ENST00000540925 F6X3S4 739 aa18.12■□□□□ 0.49
USP28-209ENST00000540925 DDNO94850 711 aaPredicted RBP18.12■□□□□ 0.49
USP28-209ENST00000540925 VEGFAP15692 232 aaPredicted RBP18.12■□□□□ 0.49
USP28-209ENST00000540925 BEND3Q5T5X7 828 aa18.12■□□□□ 0.49
USP28-209ENST00000540925 MRPL50Q8N5N7 158 aaKnown RBP18.12■□□□□ 0.49
USP28-209ENST00000540925 PLA2G12BQ9BX93 195 aa18.12■□□□□ 0.49
USP28-209ENST00000540925 SEC31BQ9NQW1 1179 aa18.12■□□□□ 0.49
USP28-209ENST00000540925 RTL9Q8NET4 1388 aa18.12■□□□□ 0.49
USP28-209ENST00000540925 MYH3P11055 1940 aa18.11■□□□□ 0.49
USP28-209ENST00000540925 CTSWP56202 376 aa18.11■□□□□ 0.49
USP28-209ENST00000540925 RPS8P62241 208 aaKnown RBP18.11■□□□□ 0.49
USP28-209ENST00000540925 CCDC152Q4G0S7 254 aa18.11■□□□□ 0.49
USP28-209ENST00000540925 TTLL11Q8NHH1 800 aa18.11■□□□□ 0.49
USP28-209ENST00000540925 DPP8Q6V1X1 898 aaPredicted RBP18.1■□□□□ 0.49
USP28-209ENST00000540925 UBE3BQ7Z3V4 1068 aa18.1■□□□□ 0.49
USP28-209ENST00000540925 MPNDQ8N594 471 aa18.1■□□□□ 0.49
USP28-209ENST00000540925 KIAA2012Q0VF49 1180 aa18.09■□□□□ 0.49
USP28-209ENST00000540925 SUPT20HQ8NEM7 779 aa18.09■□□□□ 0.49
USP28-209ENST00000540925 SSH1Q8WYL5 1049 aa18.09■□□□□ 0.49
USP28-209ENST00000540925 TMX4Q9H1E5 349 aaPredicted RBP18.09■□□□□ 0.49
USP28-209ENST00000540925 SCN4AP35499 1836 aa18.09■□□□□ 0.49
USP28-209ENST00000540925 AOC3Q16853 763 aa18.08■□□□□ 0.48
USP28-209ENST00000540925 LARGE2Q8N3Y3 721 aa18.08■□□□□ 0.48
USP28-209ENST00000540925 JDP2Q8WYK2 163 aa18.08■□□□□ 0.48
USP28-209ENST00000540925 PODXL2Q9NZ53 605 aa18.08■□□□□ 0.48
USP28-209ENST00000540925 PCNTO95613 3336 aa18.07■□□□□ 0.48
USP28-209ENST00000540925 PPIP5K2O43314 1243 aa18.07■□□□□ 0.48
USP28-209ENST00000540925 CSF1RP07333 972 aa18.07■□□□□ 0.48
USP28-209ENST00000540925 CT47B1P0C2W7 299 aaPredicted RBP18.07■□□□□ 0.48
USP28-209ENST00000540925 GPSM2P81274 684 aa18.07■□□□□ 0.48
USP28-209ENST00000540925 FSTL1Q12841 308 aa18.07■□□□□ 0.48
USP28-209ENST00000540925 ALDH1L2Q3SY69 923 aa18.07■□□□□ 0.48
USP28-209ENST00000540925 GPC2Q8N158 579 aa18.07■□□□□ 0.48
USP28-209ENST00000540925 GREM2Q9H772 168 aa18.07■□□□□ 0.48
USP28-209ENST00000540925 POLLQ9UGP5 575 aa18.07■□□□□ 0.48
USP28-209ENST00000540925 DNAJC5GQ8N7S2 189 aa18.06■□□□□ 0.48
USP28-209ENST00000540925 CCDC85AQ96PX6 553 aaPredicted RBP18.06■□□□□ 0.48
USP28-209ENST00000540925 PTPRCP08575 1304 aa18.05■□□□□ 0.48
USP28-209ENST00000540925 ALDH1L1O75891 902 aa18.05■□□□□ 0.48
USP28-209ENST00000540925 C16orf71Q8IYS4 520 aaPredicted RBP18.05■□□□□ 0.48
USP28-209ENST00000540925 ADAMTSL1Q8N6G6 1762 aa18.04■□□□□ 0.48
USP28-209ENST00000540925 BRPF1P55201 1214 aaPredicted RBP18.04■□□□□ 0.48
USP28-209ENST00000540925 FOXO4P98177 505 aa18.04■□□□□ 0.48
USP28-209ENST00000540925 NIM1KQ8IY84 436 aa18.04■□□□□ 0.48
USP28-209ENST00000540925 TBC1D16Q8TBP0 767 aa18.04■□□□□ 0.48
USP28-209ENST00000540925 TAF1DQ9H5J8 278 aaPredicted RBP18.04■□□□□ 0.48
USP28-209ENST00000540925 ZNRF3Q9ULT6 936 aa18.04■□□□□ 0.48
USP28-209ENST00000540925 NSFL1CQ9UNZ2 370 aaKnown RBP18.04■□□□□ 0.48
USP28-209ENST00000540925 UTYO14607 1347 aa18.03■□□□□ 0.48
USP28-209ENST00000540925 IQCA1LA6NCM1 817 aa18.03■□□□□ 0.48
USP28-209ENST00000540925 GRM8O00222 908 aa18.03■□□□□ 0.48
USP28-209ENST00000540925 EIF6P56537 245 aaKnown RBP18.03■□□□□ 0.48
USP28-209ENST00000540925 ANKRD18AQ8IVF6 992 aa18.03■□□□□ 0.48
USP28-209ENST00000540925 SMC1BQ8NDV3 1235 aa18.03■□□□□ 0.48
USP28-209ENST00000540925 CDC5LQ99459 802 aaKnown RBP18.03■□□□□ 0.48
USP28-209ENST00000540925 SRCIN1Q9C0H9 1055 aa18.03■□□□□ 0.48
USP28-209ENST00000540925 BSDC1Q9NW68 430 aaPredicted RBP18.03■□□□□ 0.48
USP28-209ENST00000540925 YDJCA8MPS7 323 aa18.02■□□□□ 0.48
USP28-209ENST00000540925 POTEIP0CG38 1075 aa18.02■□□□□ 0.48
USP28-209ENST00000540925 POTEJP0CG39 1038 aa18.02■□□□□ 0.48
USP28-209ENST00000540925 SCNN1DP51172 638 aa18.02■□□□□ 0.48
USP28-209ENST00000540925 APLP1P51693 650 aa18.02■□□□□ 0.48
USP28-209ENST00000540925 CXCL9Q07325 125 aa18.02■□□□□ 0.48
USP28-209ENST00000540925 FAM161AQ3B820 660 aa18.02■□□□□ 0.48
USP28-209ENST00000540925 BCL2L13Q9BXK5 485 aa18.02■□□□□ 0.48
USP28-209ENST00000540925 ITGA6P23229 1130 aa18.01■□□□□ 0.47
USP28-209ENST00000540925 EPHA10Q5JZY3 1008 aa18.01■□□□□ 0.47
USP28-209ENST00000540925 SLC4A10Q6U841 1118 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms