RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 GJA3Q9Y6H8 435 aa16.98■□□□□ 0.31
RTN3-207ENST00000536011 ISCA1Q9BUE6 129 aa16.97■□□□□ 0.31
RTN3-207ENST00000536011 TRIM28Q13263 835 aaKnown RBP16.96■□□□□ 0.31
RTN3-207ENST00000536011 RIC3Q7Z5B4 369 aa16.96■□□□□ 0.31
RTN3-207ENST00000536011 RTFDC1Q9BY42 306 aaPredicted RBP16.96■□□□□ 0.31
RTN3-207ENST00000536011 COL4A5P29400 1685 aa16.95■□□□□ 0.3
RTN3-207ENST00000536011 AOC3Q16853 763 aa16.95■□□□□ 0.3
RTN3-207ENST00000536011 MPNDQ8N594 471 aa16.95■□□□□ 0.3
RTN3-207ENST00000536011 PASKQ96RG2 1323 aa16.95■□□□□ 0.3
RTN3-207ENST00000536011 ADAMTSL1Q8N6G6 1762 aa16.94■□□□□ 0.3
RTN3-207ENST00000536011 ATP5J2-PTCD1G3V325 749 aa16.94■□□□□ 0.3
RTN3-207ENST00000536011 DDX58O95786 925 aaKnown RBP16.94■□□□□ 0.3
RTN3-207ENST00000536011 CCDC30Q5VVM6 783 aa16.94■□□□□ 0.3
RTN3-207ENST00000536011 FAM89AQ96GI7 184 aa16.94■□□□□ 0.3
RTN3-207ENST00000536011 ZNRF3Q9ULT6 936 aa16.94■□□□□ 0.3
RTN3-207ENST00000536011 DDX60Q8IY21 1712 aaKnown RBP16.93■□□□□ 0.3
RTN3-207ENST00000536011 TMEM88BA6NKF7 163 aa16.92■□□□□ 0.3
RTN3-207ENST00000536011 ELL2O00472 640 aaPredicted RBP16.92■□□□□ 0.3
RTN3-207ENST00000536011 KIAA2012Q0VF49 1180 aa16.92■□□□□ 0.3
RTN3-207ENST00000536011 SF3B3Q15393 1217 aaKnown RBP16.92■□□□□ 0.3
RTN3-207ENST00000536011 CCDC27Q2M243 656 aa16.92■□□□□ 0.3
RTN3-207ENST00000536011 USP50Q70EL3 339 aaPredicted RBP16.92■□□□□ 0.3
RTN3-207ENST00000536011 LRRC37AA6NMS7 1700 aa16.92■□□□□ 0.3
RTN3-207ENST00000536011 CDHR2Q9BYE9 1310 aa16.92■□□□□ 0.3
RTN3-207ENST00000536011 IRS4O14654 1257 aaPredicted RBP16.91■□□□□ 0.3
RTN3-207ENST00000536011 ITGBL1O95965 494 aaPredicted RBP16.91■□□□□ 0.3
RTN3-207ENST00000536011 SCNN1DP51172 638 aa16.91■□□□□ 0.3
RTN3-207ENST00000536011 TNIP1Q15025 636 aa16.91■□□□□ 0.3
RTN3-207ENST00000536011 CNTROBQ8N137 903 aa16.91■□□□□ 0.3
RTN3-207ENST00000536011 ZBTB38Q8NAP3 1195 aaPredicted RBP16.91■□□□□ 0.3
RTN3-207ENST00000536011 CNTNAP1P78357 1384 aa16.9■□□□□ 0.3
RTN3-207ENST00000536011 MAP1SQ66K74 1059 aaPredicted RBP16.9■□□□□ 0.3
RTN3-207ENST00000536011 SLC51AQ86UW1 340 aa16.9■□□□□ 0.3
RTN3-207ENST00000536011 C8orf58Q8NAV2 365 aa16.9■□□□□ 0.3
RTN3-207ENST00000536011 CCDC191Q8NCU4 936 aa16.9■□□□□ 0.3
RTN3-207ENST00000536011 STK31Q9BXU1 1019 aa16.9■□□□□ 0.3
RTN3-207ENST00000536011 MKRN1Q9UHC7 482 aaKnown RBP16.9■□□□□ 0.3
RTN3-207ENST00000536011 ANP32CO43423 234 aa16.89■□□□□ 0.29
RTN3-207ENST00000536011 HSPA1AP0DMV8 641 aaKnown RBP16.89■□□□□ 0.29
RTN3-207ENST00000536011 HSPA1BP0DMV9 641 aaKnown RBP16.89■□□□□ 0.29
RTN3-207ENST00000536011 RTL5Q5HYW3 569 aaPredicted RBP16.89■□□□□ 0.29
RTN3-207ENST00000536011 CIAPIN1Q6FI81 312 aa16.89■□□□□ 0.29
RTN3-207ENST00000536011 MYD88Q99836 296 aa16.89■□□□□ 0.29
RTN3-207ENST00000536011 PHAXQ9H814 394 aaKnown RBP16.89■□□□□ 0.29
RTN3-207ENST00000536011 ADARB2Q9NS39 739 aaKnown RBP16.89■□□□□ 0.29
RTN3-207ENST00000536011 CWC25Q9NXE8 425 aaPredicted RBP16.89■□□□□ 0.29
RTN3-207ENST00000536011 GPRC5DQ9NZD1 345 aa16.89■□□□□ 0.29
RTN3-207ENST00000536011 LTBP1Q14766 1721 aa16.88■□□□□ 0.29
RTN3-207ENST00000536011 EPS15P42566 896 aa16.88■□□□□ 0.29
RTN3-207ENST00000536011 CXCL9Q07325 125 aa16.88■□□□□ 0.29
RTN3-207ENST00000536011 CCDC152Q4G0S7 254 aa16.88■□□□□ 0.29
RTN3-207ENST00000536011 ZNF428Q96B54 188 aa16.88■□□□□ 0.29
RTN3-207ENST00000536011 EYA3Q99504 573 aa16.88■□□□□ 0.29
RTN3-207ENST00000536011 MRS2Q9HD23 443 aa16.88■□□□□ 0.29
RTN3-207ENST00000536011 IL16Q14005 1332 aa16.88■□□□□ 0.29
RTN3-207ENST00000536011 DUOX1Q9NRD9 1551 aa16.87■□□□□ 0.29
RTN3-207ENST00000536011 PCCAP05165 728 aaPredicted RBP16.87■□□□□ 0.29
RTN3-207ENST00000536011 WASHC4Q2M389 1173 aa16.87■□□□□ 0.29
RTN3-207ENST00000536011 WWC1Q8IX03 1113 aa16.87■□□□□ 0.29
RTN3-207ENST00000536011 CELF1Q92879 486 aaKnown RBP16.87■□□□□ 0.29
RTN3-207ENST00000536011 METTL22Q9BUU2 404 aaPredicted RBP16.87■□□□□ 0.29
RTN3-207ENST00000536011 BCL2L13Q9BXK5 485 aa16.87■□□□□ 0.29
RTN3-207ENST00000536011 NSFL1CQ9UNZ2 370 aaKnown RBP16.87■□□□□ 0.29
RTN3-207ENST00000536011 GMPSP49915 693 aaPredicted RBP16.86■□□□□ 0.29
RTN3-207ENST00000536011 RPS8P62241 208 aaKnown RBP16.86■□□□□ 0.29
RTN3-207ENST00000536011 NEXNQ0ZGT2 675 aa16.86■□□□□ 0.29
RTN3-207ENST00000536011 TSR2Q969E8 191 aaKnown RBP16.86■□□□□ 0.29
RTN3-207ENST00000536011 TAF1P21675 1872 aa16.86■□□□□ 0.29
RTN3-207ENST00000536011 ZNF316A6NFI3 1004 aaPredicted RBP16.85■□□□□ 0.29
RTN3-207ENST00000536011 C6orf229H3BNL8 230 aa16.85■□□□□ 0.29
RTN3-207ENST00000536011 PDE8AO60658 829 aa16.85■□□□□ 0.29
RTN3-207ENST00000536011 RAD17O75943 681 aa16.85■□□□□ 0.29
RTN3-207ENST00000536011 ABT1Q9ULW3 272 aaKnown RBP16.85■□□□□ 0.29
RTN3-207ENST00000536011 MAP3K2Q9Y2U5 619 aa16.85■□□□□ 0.29
RTN3-207ENST00000536011 RASSF10A6NK89 507 aa16.84■□□□□ 0.29
RTN3-207ENST00000536011 TWISTNBQ3B726 338 aaPredicted RBP16.84■□□□□ 0.29
RTN3-207ENST00000536011 CCDC184Q52MB2 194 aa16.84■□□□□ 0.29
RTN3-207ENST00000536011 KSR2Q6VAB6 950 aa16.84■□□□□ 0.29
RTN3-207ENST00000536011 TSPYL6Q8N831 410 aa16.84■□□□□ 0.29
RTN3-207ENST00000536011 H7C1D1 291 aa16.83■□□□□ 0.28
RTN3-207ENST00000536011 GPSM2P81274 684 aa16.83■□□□□ 0.28
RTN3-207ENST00000536011 COL13A1Q5TAT6 717 aaPredicted RBP16.83■□□□□ 0.28
RTN3-207ENST00000536011 ZC3H15Q8WU90 426 aaKnown RBP16.83■□□□□ 0.28
RTN3-207ENST00000536011 AIDAQ96BJ3 306 aa16.83■□□□□ 0.28
RTN3-207ENST00000536011 ANKIB1Q9P2G1 1089 aa16.83■□□□□ 0.28
RTN3-207ENST00000536011 PI4KAP2A4QPH2 592 aa16.82■□□□□ 0.28
RTN3-207ENST00000536011 VEGFBP49765 207 aa16.82■□□□□ 0.28
RTN3-207ENST00000536011 DEFB115Q30KQ5 88 aa16.82■□□□□ 0.28
RTN3-207ENST00000536011 PI4KAP1Q8N8J0 262 aa16.82■□□□□ 0.28
RTN3-207ENST00000536011 ZC3H12CQ9C0D7 883 aaKnown RBP16.82■□□□□ 0.28
RTN3-207ENST00000536011 PODXL2Q9NZ53 605 aa16.82■□□□□ 0.28
RTN3-207ENST00000536011 YDJCA8MPS7 323 aa16.81■□□□□ 0.28
RTN3-207ENST00000536011 G3V3G9 751 aa16.81■□□□□ 0.28
RTN3-207ENST00000536011 UFL1O94874 794 aa16.81■□□□□ 0.28
RTN3-207ENST00000536011 RPS12P25398 132 aaKnown RBP16.81■□□□□ 0.28
RTN3-207ENST00000536011 DCAF8Q5TAQ9 597 aa16.81■□□□□ 0.28
RTN3-207ENST00000536011 ANKRD18AQ8IVF6 992 aa16.81■□□□□ 0.28
RTN3-207ENST00000536011 TNS4Q8IZW8 715 aa16.81■□□□□ 0.28
RTN3-207ENST00000536011 TBC1D16Q8TBP0 767 aa16.81■□□□□ 0.28
RTN3-207ENST00000536011 DPF2Q92785 391 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 109.5 ms