RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 RTKN2Q8IZC4 609 aa19.11■□□□□ 0.65
CPSF1-208ENST00000532560 GRAPLQ8TC17 118 aaPredicted RBP19.11■□□□□ 0.65
CPSF1-208ENST00000532560 MYH3P11055 1940 aa19.11■□□□□ 0.65
CPSF1-208ENST00000532560 TIAM2Q8IVF5 1701 aa19.11■□□□□ 0.65
CPSF1-208ENST00000532560 BBOX1O75936 387 aa19.1■□□□□ 0.65
CPSF1-208ENST00000532560 GRIPAP1Q4V328 841 aa19.1■□□□□ 0.65
CPSF1-208ENST00000532560 UBE3BQ7Z3V4 1068 aa19.1■□□□□ 0.65
CPSF1-208ENST00000532560 JARID2Q92833 1246 aaPredicted RBP19.1■□□□□ 0.65
CPSF1-208ENST00000532560 LRRC37AA6NMS7 1700 aa19.1■□□□□ 0.65
CPSF1-208ENST00000532560 ALDH1L1O75891 902 aa19.09■□□□□ 0.65
CPSF1-208ENST00000532560 RARSP54136 660 aaKnown RBP19.09■□□□□ 0.65
CPSF1-208ENST00000532560 CASP7P55210 303 aa19.09■□□□□ 0.65
CPSF1-208ENST00000532560 CTSWP56202 376 aa19.09■□□□□ 0.65
CPSF1-208ENST00000532560 FKBP4Q02790 459 aaKnown RBP eCLIP19.09■□□□□ 0.65
CPSF1-208ENST00000532560 CCDC152Q4G0S7 254 aa19.09■□□□□ 0.65
CPSF1-208ENST00000532560 TMC4Q7Z404 712 aa19.09■□□□□ 0.65
CPSF1-208ENST00000532560 ATP6V0A2Q9Y487 856 aa19.09■□□□□ 0.65
CPSF1-208ENST00000532560 DICER1Q9UPY3 1922 aaKnown RBP19.09■□□□□ 0.65
CPSF1-208ENST00000532560 CCDC88AQ3V6T2 1871 aa19.09■□□□□ 0.65
CPSF1-208ENST00000532560 TAF1P21675 1872 aa19.08■□□□□ 0.65
CPSF1-208ENST00000532560 SLC4A10Q6U841 1118 aa19.08■□□□□ 0.64
CPSF1-208ENST00000532560 PSMD1Q99460 953 aa19.08■□□□□ 0.64
CPSF1-208ENST00000532560 PLA2G12BQ9BX93 195 aa19.08■□□□□ 0.64
CPSF1-208ENST00000532560 COL4A1P02462 1669 aa19.08■□□□□ 0.64
CPSF1-208ENST00000532560 SRCIN1Q9C0H9 1055 aa19.07■□□□□ 0.64
CPSF1-208ENST00000532560 RTL9Q8NET4 1388 aa19.06■□□□□ 0.64
CPSF1-208ENST00000532560 KIF16BQ96L93 1317 aa19.06■□□□□ 0.64
CPSF1-208ENST00000532560 GRM8O00222 908 aa19.06■□□□□ 0.64
CPSF1-208ENST00000532560 SLC51AQ86UW1 340 aa19.06■□□□□ 0.64
CPSF1-208ENST00000532560 SP8Q8IXZ3 490 aa19.06■□□□□ 0.64
CPSF1-208ENST00000532560 CELF1Q92879 486 aaKnown RBP19.06■□□□□ 0.64
CPSF1-208ENST00000532560 TMX4Q9H1E5 349 aaPredicted RBP19.06■□□□□ 0.64
CPSF1-208ENST00000532560 TTLL11Q8NHH1 800 aa19.05■□□□□ 0.64
CPSF1-208ENST00000532560 RPS8P62241 208 aaKnown RBP19.03■□□□□ 0.64
CPSF1-208ENST00000532560 API5Q9BZZ5 524 aaKnown RBP19.03■□□□□ 0.64
CPSF1-208ENST00000532560 SEC31BQ9NQW1 1179 aa19.03■□□□□ 0.64
CPSF1-208ENST00000532560 ZNF277Q9NRM2 450 aaPredicted RBP19.03■□□□□ 0.64
CPSF1-208ENST00000532560 NOB1Q9ULX3 412 aaKnown RBP19.03■□□□□ 0.64
CPSF1-208ENST00000532560 LTBP1Q14766 1721 aa19.03■□□□□ 0.64
CPSF1-208ENST00000532560 UTYO14607 1347 aa19.02■□□□□ 0.64
CPSF1-208ENST00000532560 IARSP41252 1262 aaKnown RBP19.02■□□□□ 0.64
CPSF1-208ENST00000532560 CCDC85AQ96PX6 553 aaPredicted RBP19.02■□□□□ 0.64
CPSF1-208ENST00000532560 CDC5LQ99459 802 aaKnown RBP19.02■□□□□ 0.64
CPSF1-208ENST00000532560 RTFDC1Q9BY42 306 aaPredicted RBP19.02■□□□□ 0.64
CPSF1-208ENST00000532560 GREM2Q9H772 168 aa19.02■□□□□ 0.64
CPSF1-208ENST00000532560 GPBP1L1Q9HC44 474 aaPredicted RBP19.02■□□□□ 0.64
CPSF1-208ENST00000532560 C9orf78Q9NZ63 289 aaPredicted RBP19.02■□□□□ 0.64
CPSF1-208ENST00000532560 DUOX1Q9NRD9 1551 aa19.02■□□□□ 0.63
CPSF1-208ENST00000532560 CSF1RP07333 972 aa19.01■□□□□ 0.63
CPSF1-208ENST00000532560 ARHGAP45Q92619 1136 aa19.01■□□□□ 0.63
CPSF1-208ENST00000532560 DPP8Q6V1X1 898 aaPredicted RBP19■□□□□ 0.63
CPSF1-208ENST00000532560 ANKRD18AQ8IVF6 992 aa19■□□□□ 0.63
CPSF1-208ENST00000532560 MPNDQ8N594 471 aa19■□□□□ 0.63
CPSF1-208ENST00000532560 SUPT20HQ8NEM7 779 aa19■□□□□ 0.63
CPSF1-208ENST00000532560 ZNF526Q8TF50 670 aaPredicted RBP19■□□□□ 0.63
CPSF1-208ENST00000532560 CCT4P50991 539 aaKnown RBP18.99■□□□□ 0.63
CPSF1-208ENST00000532560 FOXO4P98177 505 aa18.99■□□□□ 0.63
CPSF1-208ENST00000532560 FAM161AQ3B820 660 aa18.99■□□□□ 0.63
CPSF1-208ENST00000532560 VPS33BQ9H267 617 aa18.99■□□□□ 0.63
CPSF1-208ENST00000532560 KDM2BQ8NHM5 1336 aa18.99■□□□□ 0.63
CPSF1-208ENST00000532560 COL4A5P29400 1685 aa18.98■□□□□ 0.63
CPSF1-208ENST00000532560 GLTPD2A6NH11 291 aa18.98■□□□□ 0.63
CPSF1-208ENST00000532560 BCAR3O75815 825 aa18.98■□□□□ 0.63
CPSF1-208ENST00000532560 ITGA6P23229 1130 aa18.98■□□□□ 0.63
CPSF1-208ENST00000532560 SPEF2Q9C093 1822 aa18.97■□□□□ 0.63
CPSF1-208ENST00000532560 IPO8O15397 1037 aaKnown RBP18.97■□□□□ 0.63
CPSF1-208ENST00000532560 NBPF7P0C2Y1 421 aaPredicted RBP18.97■□□□□ 0.63
CPSF1-208ENST00000532560 SUCLG2Q96I99 432 aa18.97■□□□□ 0.63
CPSF1-208ENST00000532560 TRIM27P14373 513 aa18.96■□□□□ 0.63
CPSF1-208ENST00000532560 EPHA10Q5JZY3 1008 aa18.96■□□□□ 0.63
CPSF1-208ENST00000532560 LARGE2Q8N3Y3 721 aa18.96■□□□□ 0.63
CPSF1-208ENST00000532560 JDP2Q8WYK2 163 aa18.96■□□□□ 0.63
CPSF1-208ENST00000532560 USP44Q9H0E7 712 aa18.96■□□□□ 0.63
CPSF1-208ENST00000532560 BSDC1Q9NW68 430 aaPredicted RBP18.96■□□□□ 0.63
CPSF1-208ENST00000532560 PODXL2Q9NZ53 605 aa18.96■□□□□ 0.63
CPSF1-208ENST00000532560 WDR90Q96KV7 1748 aa18.96■□□□□ 0.63
CPSF1-208ENST00000532560 FZD9O00144 591 aa18.95■□□□□ 0.62
CPSF1-208ENST00000532560 PPIP5K2O43314 1243 aa18.95■□□□□ 0.62
CPSF1-208ENST00000532560 IGHMBP2P38935 993 aaKnown RBP18.95■□□□□ 0.62
CPSF1-208ENST00000532560 GPSM2P81274 684 aa18.95■□□□□ 0.62
CPSF1-208ENST00000532560 KIAA2012Q0VF49 1180 aa18.95■□□□□ 0.62
CPSF1-208ENST00000532560 DPY19L2Q6NUT2 758 aa18.95■□□□□ 0.62
CPSF1-208ENST00000532560 LMBR1LQ6UX01 489 aa18.95■□□□□ 0.62
CPSF1-208ENST00000532560 ATF7IPQ6VMQ6 1270 aa18.95■□□□□ 0.62
CPSF1-208ENST00000532560 KAZALD1Q96I82 304 aa18.95■□□□□ 0.62
CPSF1-208ENST00000532560 NSFL1CQ9UNZ2 370 aaKnown RBP18.95■□□□□ 0.62
CPSF1-208ENST00000532560 ANKRD18BA2A2Z9 1011 aa18.94■□□□□ 0.62
CPSF1-208ENST00000532560 IFIT5Q13325 482 aaKnown RBP18.94■□□□□ 0.62
CPSF1-208ENST00000532560 AOC3Q16853 763 aa18.94■□□□□ 0.62
CPSF1-208ENST00000532560 NIM1KQ8IY84 436 aa18.94■□□□□ 0.62
CPSF1-208ENST00000532560 NMRK2Q9NPI5 230 aa18.94■□□□□ 0.62
CPSF1-208ENST00000532560 ZNF541Q9H0D2 1346 aa18.94■□□□□ 0.62
CPSF1-208ENST00000532560 KIF3CO14782 793 aa18.93■□□□□ 0.62
CPSF1-208ENST00000532560 RABL6Q3YEC7 729 aaPredicted RBP18.93■□□□□ 0.62
CPSF1-208ENST00000532560 INTS3Q68E01 1043 aaKnown RBP18.93■□□□□ 0.62
CPSF1-208ENST00000532560 FRAT1Q92837 279 aaPredicted RBP18.93■□□□□ 0.62
CPSF1-208ENST00000532560 BICC1Q9H694 974 aaKnown RBP18.93■□□□□ 0.62
CPSF1-208ENST00000532560 ANKIB1Q9P2G1 1089 aa18.93■□□□□ 0.62
CPSF1-208ENST00000532560 POLLQ9UGP5 575 aa18.93■□□□□ 0.62
CPSF1-208ENST00000532560 CHMP3Q9Y3E7 222 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms