RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 LYPD4Q6UWN0 246 aa8.7□□□□□ -1.02
CD44-231ENST00000531110 FCHSD1Q86WN1 690 aa8.7□□□□□ -1.02
CD44-231ENST00000531110 GJD3Q8N144 294 aa8.7□□□□□ -1.02
CD44-231ENST00000531110 BHMTQ93088 406 aa8.7□□□□□ -1.02
CD44-231ENST00000531110 ELOA3CA0A087WX78 387 aaPredicted RBP8.69□□□□□ -1.02
CD44-231ENST00000531110 ELOA3DA6NLF2 546 aaPredicted RBP8.69□□□□□ -1.02
CD44-231ENST00000531110 NEURL1BA8MQ27 555 aa8.69□□□□□ -1.02
CD44-231ENST00000531110 NDUFB5O43674 189 aa8.69□□□□□ -1.02
CD44-231ENST00000531110 NFKB1P19838 968 aa8.69□□□□□ -1.02
CD44-231ENST00000531110 PCBP4P57723 403 aaKnown RBP8.69□□□□□ -1.02
CD44-231ENST00000531110 ELOA3BQ3SY89 546 aa8.69□□□□□ -1.02
CD44-231ENST00000531110 ELOA3Q8NG57 546 aa8.69□□□□□ -1.02
CD44-231ENST00000531110 FAM181BA6NEQ2 426 aa8.68□□□□□ -1.02
CD44-231ENST00000531110 ARHGEF15O94989 841 aa8.68□□□□□ -1.02
CD44-231ENST00000531110 DNM1Q05193 864 aaKnown RBP8.68□□□□□ -1.02
CD44-231ENST00000531110 AAMPQ13685 434 aa8.68□□□□□ -1.02
CD44-231ENST00000531110 AEBP1Q8IUX7 1158 aa8.68□□□□□ -1.02
CD44-231ENST00000531110 SVOPQ8N4V2 548 aa8.68□□□□□ -1.02
CD44-231ENST00000531110 TTC16Q8NEE8 873 aa8.68□□□□□ -1.02
CD44-231ENST00000531110 TRPM4Q8TD43 1214 aa8.68□□□□□ -1.02
CD44-231ENST00000531110 EDARADDQ8WWZ3 215 aa8.68□□□□□ -1.02
CD44-231ENST00000531110 TLR7Q9NYK1 1049 aaKnown RBP8.68□□□□□ -1.02
CD44-231ENST00000531110 ZFATQ9P243 1243 aa8.68□□□□□ -1.02
CD44-231ENST00000531110 BRPF3Q9ULD4 1205 aa8.68□□□□□ -1.02
CD44-231ENST00000531110 POLIQ9UNA4 740 aa8.68□□□□□ -1.02
CD44-231ENST00000531110 USP20Q9Y2K6 914 aa8.68□□□□□ -1.02
CD44-231ENST00000531110 RARAP10276 462 aa8.67□□□□□ -1.02
CD44-231ENST00000531110 NRLP54845 237 aa8.67□□□□□ -1.02
CD44-231ENST00000531110 PDE3BQ13370 1112 aa8.67□□□□□ -1.02
CD44-231ENST00000531110 KANK3Q6NY19 840 aa8.67□□□□□ -1.02
CD44-231ENST00000531110 WHAMMQ8TF30 809 aa8.67□□□□□ -1.02
CD44-231ENST00000531110 RBCK1Q9BYM8 510 aa8.67□□□□□ -1.02
CD44-231ENST00000531110 SASH3O75995 380 aa8.66□□□□□ -1.02
CD44-231ENST00000531110 ALAS2P22557 587 aa8.66□□□□□ -1.02
CD44-231ENST00000531110 TARSP26639 723 aaKnown RBP8.66□□□□□ -1.02
CD44-231ENST00000531110 GPLD1P80108 840 aa8.66□□□□□ -1.02
CD44-231ENST00000531110 SND1Q7KZF4 910 aaKnown RBP eCLIP8.66□□□□□ -1.02
CD44-231ENST00000531110 DHX32Q7L7V1 743 aaKnown RBP8.66□□□□□ -1.02
CD44-231ENST00000531110 GALNT6Q8NCL4 622 aa8.66□□□□□ -1.02
CD44-231ENST00000531110 FAM129BQ96TA1 746 aa8.66□□□□□ -1.02
CD44-231ENST00000531110 CCDC87Q9NVE4 849 aa8.66□□□□□ -1.02
CD44-231ENST00000531110 ABI2Q9NYB9 513 aaPredicted RBP8.66□□□□□ -1.02
CD44-231ENST00000531110 STK17AQ9UEE5 414 aa8.66□□□□□ -1.02
CD44-231ENST00000531110 DCTN4Q9UJW0 460 aa8.66□□□□□ -1.02
CD44-231ENST00000531110 ADH7P40394 386 aa8.65□□□□□ -1.02
CD44-231ENST00000531110 C1orf229Q6ZS94 237 aaPredicted RBP8.65□□□□□ -1.02
CD44-231ENST00000531110 ZNF438Q7Z4V0 828 aa8.65□□□□□ -1.02
CD44-231ENST00000531110 RAB44Q7Z6P3 723 aaPredicted RBP8.65□□□□□ -1.02
CD44-231ENST00000531110 OR13H1Q8NG92 308 aa8.65□□□□□ -1.02
CD44-231ENST00000531110 ELP3Q9H9T3 547 aa8.65□□□□□ -1.02
CD44-231ENST00000531110 PSAPP07602 524 aa8.64□□□□□ -1.03
CD44-231ENST00000531110 PLAURQ03405 335 aa8.64□□□□□ -1.03
CD44-231ENST00000531110 PMEPA1Q969W9 287 aa8.64□□□□□ -1.03
CD44-231ENST00000531110 DMRTB1Q96MA1 342 aa8.64□□□□□ -1.03
CD44-231ENST00000531110 GGNBP2Q9H3C7 697 aa8.64□□□□□ -1.03
CD44-231ENST00000531110 BIN2Q9UBW5 565 aaPredicted RBP8.64□□□□□ -1.03
CD44-231ENST00000531110 SHISA8B8ZZ34 492 aa8.63□□□□□ -1.03
CD44-231ENST00000531110 MMP20O60882 483 aa8.63□□□□□ -1.03
CD44-231ENST00000531110 NEFLP07196 543 aa8.63□□□□□ -1.03
CD44-231ENST00000531110 TTC39BQ5VTQ0 682 aaPredicted RBP8.63□□□□□ -1.03
CD44-231ENST00000531110 SNX29Q8TEQ0 813 aa8.63□□□□□ -1.03
CD44-231ENST00000531110 ALKBH8Q96BT7 664 aaKnown RBP8.63□□□□□ -1.03
CD44-231ENST00000531110 BTBD6Q96KE9 485 aa8.63□□□□□ -1.03
CD44-231ENST00000531110 UBE2OQ9C0C9 1292 aaKnown RBP8.63□□□□□ -1.03
CD44-231ENST00000531110 BCL11AQ9H165 835 aa8.63□□□□□ -1.03
CD44-231ENST00000531110 PRDM6Q9NQX0 595 aa8.63□□□□□ -1.03
CD44-231ENST00000531110 DNAJB12Q9NXW2 375 aaKnown RBP8.63□□□□□ -1.03
CD44-231ENST00000531110 FRRS1LQ9P0K9 344 aa8.63□□□□□ -1.03
CD44-231ENST00000531110 SLC6A14Q9UN76 642 aa8.63□□□□□ -1.03
CD44-231ENST00000531110 IGHA2P01877 340 aa8.62□□□□□ -1.03
CD44-231ENST00000531110 C8orf34Q49A92 452 aa8.62□□□□□ -1.03
CD44-231ENST00000531110 CHSY3Q70JA7 882 aa8.62□□□□□ -1.03
CD44-231ENST00000531110 KRT25Q7Z3Z0 450 aa8.62□□□□□ -1.03
CD44-231ENST00000531110 PIK3R2O00459 728 aa8.61□□□□□ -1.03
CD44-231ENST00000531110 KIF4AO95239 1232 aa8.61□□□□□ -1.03
CD44-231ENST00000531110 TMEM63CQ9P1W3 806 aa8.61□□□□□ -1.03
CD44-231ENST00000531110 ZBTB7CA1YPR0 619 aa8.6□□□□□ -1.03
CD44-231ENST00000531110 TNFRSF21O75509 655 aa8.6□□□□□ -1.03
CD44-231ENST00000531110 NEDD1Q8NHV4 660 aa8.6□□□□□ -1.03
CD44-231ENST00000531110 TTC9Q92623 222 aa8.6□□□□□ -1.03
CD44-231ENST00000531110 PHF20L1A8MW92 1017 aa8.59□□□□□ -1.03
CD44-231ENST00000531110 DGKGP49619 791 aa8.59□□□□□ -1.03
CD44-231ENST00000531110 ADAMTS8Q9UP79 889 aa8.59□□□□□ -1.03
CD44-231ENST00000531110 ZBTB42B2RXF5 422 aa8.58□□□□□ -1.04
CD44-231ENST00000531110 HOXB4P17483 251 aaPredicted RBP8.58□□□□□ -1.04
CD44-231ENST00000531110 HYAL2Q12891 473 aa8.58□□□□□ -1.04
CD44-231ENST00000531110 C20orf204Q6ZNR8 217 aa8.58□□□□□ -1.04
CD44-231ENST00000531110 ZSCAN29Q8IWY8 852 aaPredicted RBP8.58□□□□□ -1.04
CD44-231ENST00000531110 ASB16Q96NS5 453 aa8.58□□□□□ -1.04
CD44-231ENST00000531110 DNAJC25Q9H1X3 360 aa8.58□□□□□ -1.04
CD44-231ENST00000531110 STARD13Q9Y3M8 1113 aa8.58□□□□□ -1.04
CD44-231ENST00000531110 LOC102724428A0A0B4J2F2 783 aa8.57□□□□□ -1.04
CD44-231ENST00000531110 AMPD1P23109 780 aa8.57□□□□□ -1.04
CD44-231ENST00000531110 MAPK1P28482 360 aa8.57□□□□□ -1.04
CD44-231ENST00000531110 MARSP56192 900 aaKnown RBP8.57□□□□□ -1.04
CD44-231ENST00000531110 SIK1P57059 783 aa8.57□□□□□ -1.04
CD44-231ENST00000531110 FAM35AQ86V20 835 aa8.57□□□□□ -1.04
CD44-231ENST00000531110 SCARF2Q96GP6 870 aaPredicted RBP8.57□□□□□ -1.04
CD44-231ENST00000531110 RBSNQ9H1K0 784 aa8.57□□□□□ -1.04
CD44-231ENST00000531110 CHRDQ9H2X0 955 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms