RNA–Protein interactions for RNA: ENST00000529542.1

HIF3A-213, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 5

Gene HIF3A, Length 1,031 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-213ENST00000529542 DBF4Q9UBU7 674 aaPredicted RBP18.65■□□□□ 0.58
HIF3A-213ENST00000529542 WDR33Q9C0J8 1336 aaKnown RBP18.65■□□□□ 0.58
HIF3A-213ENST00000529542 HDGFL1Q5TGJ6 251 aa18.64■□□□□ 0.57
HIF3A-213ENST00000529542 CIAPIN1Q6FI81 312 aa18.64■□□□□ 0.57
HIF3A-213ENST00000529542 ANKRD13DQ6ZTN6 518 aa18.64■□□□□ 0.57
HIF3A-213ENST00000529542 TRIM35Q9UPQ4 493 aa18.64■□□□□ 0.57
HIF3A-213ENST00000529542 ZC3H15Q8WU90 426 aaKnown RBP18.63■□□□□ 0.57
HIF3A-213ENST00000529542 CFAP44Q96MT7 982 aa18.63■□□□□ 0.57
HIF3A-213ENST00000529542 HYPKQ9NX55 129 aa18.63■□□□□ 0.57
HIF3A-213ENST00000529542 CHPF2Q9P2E5 772 aa18.63■□□□□ 0.57
HIF3A-213ENST00000529542 LAS1LQ9Y4W2 734 aaKnown RBP18.63■□□□□ 0.57
HIF3A-213ENST00000529542 ANKRD36CQ5JPF3 1778 aa18.63■□□□□ 0.57
HIF3A-213ENST00000529542 DDX10Q13206 875 aaKnown RBP18.62■□□□□ 0.57
HIF3A-213ENST00000529542 CCDC146Q8IYE0 955 aa18.62■□□□□ 0.57
HIF3A-213ENST00000529542 PGAP2Q9UHJ9 254 aa18.62■□□□□ 0.57
HIF3A-213ENST00000529542 LTBP1Q14766 1721 aa18.62■□□□□ 0.57
HIF3A-213ENST00000529542 HSP90B1P14625 803 aaKnown RBP18.61■□□□□ 0.57
HIF3A-213ENST00000529542 TRIM28Q13263 835 aaKnown RBP18.61■□□□□ 0.57
HIF3A-213ENST00000529542 SF3B3Q15393 1217 aaKnown RBP18.61■□□□□ 0.57
HIF3A-213ENST00000529542 ISCA1Q9BUE6 129 aa18.61■□□□□ 0.57
HIF3A-213ENST00000529542 BCL2L13Q9BXK5 485 aa18.61■□□□□ 0.57
HIF3A-213ENST00000529542 CHMP4AQ9BY43 222 aa18.61■□□□□ 0.57
HIF3A-213ENST00000529542 GMPSP49915 693 aaPredicted RBP18.6■□□□□ 0.57
HIF3A-213ENST00000529542 KRT24Q2M2I5 525 aa18.6■□□□□ 0.57
HIF3A-213ENST00000529542 HHIPL1Q96JK4 782 aa18.6■□□□□ 0.57
HIF3A-213ENST00000529542 CAPNS2Q96L46 248 aa18.6■□□□□ 0.57
HIF3A-213ENST00000529542 BEGAINQ9BUH8 593 aa18.6■□□□□ 0.57
HIF3A-213ENST00000529542 ADAMTS8Q9UP79 889 aa18.6■□□□□ 0.57
HIF3A-213ENST00000529542 TLL2Q9Y6L7 1015 aa18.6■□□□□ 0.57
HIF3A-213ENST00000529542 MAP2K2P36507 400 aa18.59■□□□□ 0.57
HIF3A-213ENST00000529542 LBX1P52954 281 aa18.59■□□□□ 0.57
HIF3A-213ENST00000529542 CALD1Q05682 793 aaKnown RBP18.59■□□□□ 0.57
HIF3A-213ENST00000529542 CST9Q5W186 159 aa18.59■□□□□ 0.57
HIF3A-213ENST00000529542 SLC51AQ86UW1 340 aa18.59■□□□□ 0.57
HIF3A-213ENST00000529542 H7C1D1 291 aa18.58■□□□□ 0.56
HIF3A-213ENST00000529542 WASHC4Q2M389 1173 aa18.58■□□□□ 0.56
HIF3A-213ENST00000529542 DUSP27Q5VZP5 1158 aa18.58■□□□□ 0.56
HIF3A-213ENST00000529542 DPF2Q92785 391 aa18.58■□□□□ 0.56
HIF3A-213ENST00000529542 GPR101Q96P66 508 aaPredicted RBP18.58■□□□□ 0.56
HIF3A-213ENST00000529542 TRPM7Q96QT4 1865 aa18.57■□□□□ 0.56
HIF3A-213ENST00000529542 TRAF5O00463 557 aa18.57■□□□□ 0.56
HIF3A-213ENST00000529542 RAD17O75943 681 aa18.57■□□□□ 0.56
HIF3A-213ENST00000529542 HSPA8P11142 646 aaKnown RBP18.57■□□□□ 0.56
HIF3A-213ENST00000529542 PAXIP1Q6ZW49 1069 aaPredicted RBP18.57■□□□□ 0.56
HIF3A-213ENST00000529542 CDC37L1Q7L3B6 337 aa18.57■□□□□ 0.56
HIF3A-213ENST00000529542 FAM89AQ96GI7 184 aa18.57■□□□□ 0.56
HIF3A-213ENST00000529542 CNOT7Q9UIV1 285 aaKnown RBP18.57■□□□□ 0.56
HIF3A-213ENST00000529542 LAMB2P55268 1798 aa18.57■□□□□ 0.56
HIF3A-213ENST00000529542 SAPCD2Q86UD0 394 aa18.56■□□□□ 0.56
HIF3A-213ENST00000529542 EYA3Q99504 573 aa18.56■□□□□ 0.56
HIF3A-213ENST00000529542 NSFL1CQ9UNZ2 370 aaKnown RBP18.56■□□□□ 0.56
HIF3A-213ENST00000529542 CELF2O95319 508 aaKnown RBP18.55■□□□□ 0.56
HIF3A-213ENST00000529542 RPS12P25398 132 aaKnown RBP18.55■□□□□ 0.56
HIF3A-213ENST00000529542 FMR1Q06787 632 aaKnown RBP eCLIP18.55■□□□□ 0.56
HIF3A-213ENST00000529542 GOLGA2Q08379 1002 aa18.55■□□□□ 0.56
HIF3A-213ENST00000529542 YDJCA8MPS7 323 aa18.54■□□□□ 0.56
HIF3A-213ENST00000529542 ATP5J2-PTCD1G3V325 749 aa18.54■□□□□ 0.56
HIF3A-213ENST00000529542 IRS4O14654 1257 aaPredicted RBP18.54■□□□□ 0.56
HIF3A-213ENST00000529542 CA12O43570 354 aa18.54■□□□□ 0.56
HIF3A-213ENST00000529542 ZNF853P0CG23 659 aa18.54■□□□□ 0.56
HIF3A-213ENST00000529542 RPS8P62241 208 aaKnown RBP18.54■□□□□ 0.56
HIF3A-213ENST00000529542 GNAI1P63096 354 aa18.54■□□□□ 0.56
HIF3A-213ENST00000529542 CYP4F22Q6NT55 531 aa18.54■□□□□ 0.56
HIF3A-213ENST00000529542 RIC3Q7Z5B4 369 aa18.54■□□□□ 0.56
HIF3A-213ENST00000529542 ZBTB38Q8NAP3 1195 aaPredicted RBP18.54■□□□□ 0.56
HIF3A-213ENST00000529542 CELF1Q92879 486 aaKnown RBP18.54■□□□□ 0.56
HIF3A-213ENST00000529542 MBIPQ9NS73 344 aa18.54■□□□□ 0.56
HIF3A-213ENST00000529542 IFT57Q9NWB7 429 aa18.54■□□□□ 0.56
HIF3A-213ENST00000529542 LRRC37AA6NMS7 1700 aa18.53■□□□□ 0.56
HIF3A-213ENST00000529542 HIRAP54198 1017 aaPredicted RBP18.53■□□□□ 0.56
HIF3A-213ENST00000529542 GLIS2Q9BZE0 524 aaPredicted RBP18.53■□□□□ 0.56
HIF3A-213ENST00000529542 THSD7BQ9C0I4 1608 aa18.52■□□□□ 0.56
HIF3A-213ENST00000529542 C6orf229H3BNL8 230 aa18.52■□□□□ 0.56
HIF3A-213ENST00000529542 MICALL2Q8IY33 904 aa18.52■□□□□ 0.56
HIF3A-213ENST00000529542 CCDC191Q8NCU4 936 aa18.52■□□□□ 0.56
HIF3A-213ENST00000529542 PRKRIP1Q9H875 184 aaPredicted RBP18.52■□□□□ 0.56
HIF3A-213ENST00000529542 PODXL2Q9NZ53 605 aa18.52■□□□□ 0.56
HIF3A-213ENST00000529542 TRPM4Q8TD43 1214 aa18.51■□□□□ 0.55
HIF3A-213ENST00000529542 ZC3H12CQ9C0D7 883 aaKnown RBP18.51■□□□□ 0.55
HIF3A-213ENST00000529542 POLLQ9UGP5 575 aa18.51■□□□□ 0.55
HIF3A-213ENST00000529542 DUOX1Q9NRD9 1551 aa18.51■□□□□ 0.55
HIF3A-213ENST00000529542 DDX60Q8IY21 1712 aaKnown RBP18.5■□□□□ 0.55
HIF3A-213ENST00000529542 PSMD14O00487 310 aa18.5■□□□□ 0.55
HIF3A-213ENST00000529542 DDX58O95786 925 aaKnown RBP18.5■□□□□ 0.55
HIF3A-213ENST00000529542 GPSM2P81274 684 aa18.5■□□□□ 0.55
HIF3A-213ENST00000529542 GRM1Q13255 1194 aa18.5■□□□□ 0.55
HIF3A-213ENST00000529542 APAF1O14727 1248 aa18.49■□□□□ 0.55
HIF3A-213ENST00000529542 PCCAP05165 728 aaPredicted RBP18.49■□□□□ 0.55
HIF3A-213ENST00000529542 BRPF1P55201 1214 aaPredicted RBP18.49■□□□□ 0.55
HIF3A-213ENST00000529542 CCDC152Q4G0S7 254 aa18.49■□□□□ 0.55
HIF3A-213ENST00000529542 RTL5Q5HYW3 569 aaPredicted RBP18.49■□□□□ 0.55
HIF3A-213ENST00000529542 TBC1D16Q8TBP0 767 aa18.49■□□□□ 0.55
HIF3A-213ENST00000529542 DBNDD1Q9H9R9 158 aa18.49■□□□□ 0.55
HIF3A-213ENST00000529542 RIMBP2O15034 1052 aa18.48■□□□□ 0.55
HIF3A-213ENST00000529542 ECE2O60344 883 aa18.48■□□□□ 0.55
HIF3A-213ENST00000529542 PDE8AO60658 829 aa18.48■□□□□ 0.55
HIF3A-213ENST00000529542 NOGQ13253 232 aa18.48■□□□□ 0.55
HIF3A-213ENST00000529542 CCDC30Q5VVM6 783 aa18.48■□□□□ 0.55
HIF3A-213ENST00000529542 ABHD8Q96I13 439 aa18.48■□□□□ 0.55
HIF3A-213ENST00000529542 ZBTB12Q9Y330 459 aaPredicted RBP18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms