RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 L3MBTL2Q969R5 705 aa6.92□□□□□ -1.3
CD44-225ENST00000527326 DRC1Q96MC2 740 aa6.92□□□□□ -1.3
CD44-225ENST00000527326 PAIP2Q9BPZ3 127 aaKnown RBP6.92□□□□□ -1.3
CD44-225ENST00000527326 ANKRD36BQ8N2N9 1353 aa6.92□□□□□ -1.3
CD44-225ENST00000527326 PLEKHG2Q9H7P9 1386 aa6.92□□□□□ -1.3
CD44-225ENST00000527326 FGD6Q6ZV73 1430 aa6.92□□□□□ -1.3
CD44-225ENST00000527326 CAMSAP2Q08AD1 1489 aa6.92□□□□□ -1.3
CD44-225ENST00000527326 SCAF11Q99590 1463 aaKnown RBP6.92□□□□□ -1.3
CD44-225ENST00000527326 H0YHG0 523 aa6.91□□□□□ -1.3
CD44-225ENST00000527326 CTAGE5O15320 804 aa6.91□□□□□ -1.3
CD44-225ENST00000527326 ADH1CP00326 375 aa6.91□□□□□ -1.3
CD44-225ENST00000527326 CPP00450 1065 aa6.91□□□□□ -1.3
CD44-225ENST00000527326 IVLP07476 585 aa6.91□□□□□ -1.3
CD44-225ENST00000527326 IRX1P78414 480 aaPredicted RBP6.91□□□□□ -1.3
CD44-225ENST00000527326 SARNPP82979 210 aaKnown RBP6.91□□□□□ -1.3
CD44-225ENST00000527326 SKIV2LQ15477 1246 aaKnown RBP6.91□□□□□ -1.3
CD44-225ENST00000527326 DUSP27Q5VZP5 1158 aa6.91□□□□□ -1.3
CD44-225ENST00000527326 KRBA2Q6ZNG9 492 aa6.91□□□□□ -1.3
CD44-225ENST00000527326 CCDC191Q8NCU4 936 aa6.91□□□□□ -1.3
CD44-225ENST00000527326 CCDC112Q8NEF3 446 aa6.91□□□□□ -1.3
CD44-225ENST00000527326 ARMC2Q8NEN0 867 aa6.91□□□□□ -1.3
CD44-225ENST00000527326 TMX1Q9H3N1 280 aa6.91□□□□□ -1.3
CD44-225ENST00000527326 TOMM22Q9NS69 142 aa6.91□□□□□ -1.3
CD44-225ENST00000527326 ZNF446Q9NWS9 450 aa6.91□□□□□ -1.3
CD44-225ENST00000527326 STK26Q9P289 416 aa6.91□□□□□ -1.3
CD44-225ENST00000527326 NUP160Q12769 1436 aa6.91□□□□□ -1.3
CD44-225ENST00000527326 FYCO1Q9BQS8 1478 aa6.91□□□□□ -1.3
CD44-225ENST00000527326 BIVM-ERCC5R4GMW8 1640 aa6.9□□□□□ -1.3
CD44-225ENST00000527326 MPHOSPH10O00566 681 aaKnown RBP6.9□□□□□ -1.3
CD44-225ENST00000527326 TIMP2P16035 220 aa6.9□□□□□ -1.3
CD44-225ENST00000527326 ERCC3P19447 782 aa6.9□□□□□ -1.3
CD44-225ENST00000527326 ARID4AP29374 1257 aaPredicted RBP6.9□□□□□ -1.3
CD44-225ENST00000527326 USP8P40818 1118 aa6.9□□□□□ -1.3
CD44-225ENST00000527326 SCARF1Q14162 830 aa6.9□□□□□ -1.3
CD44-225ENST00000527326 C4orf48Q5BLP8 95 aa6.9□□□□□ -1.3
CD44-225ENST00000527326 MCTP1Q6DN14 999 aa6.9□□□□□ -1.3
CD44-225ENST00000527326 MMS22LQ6ZRQ5 1243 aa6.9□□□□□ -1.3
CD44-225ENST00000527326 FBXO18Q8NFZ0 1043 aa6.9□□□□□ -1.3
CD44-225ENST00000527326 SLC16A10Q8TF71 515 aa6.9□□□□□ -1.3
CD44-225ENST00000527326 ZFP42Q96MM3 310 aa6.9□□□□□ -1.3
CD44-225ENST00000527326 CDK15Q96Q40 435 aa6.9□□□□□ -1.3
CD44-225ENST00000527326 RWDD1Q9H446 243 aaPredicted RBP6.9□□□□□ -1.3
CD44-225ENST00000527326 CWC22Q9HCG8 908 aaKnown RBP6.9□□□□□ -1.3
CD44-225ENST00000527326 PSD3Q9NYI0 1048 aa6.9□□□□□ -1.3
CD44-225ENST00000527326 USP25Q9UHP3 1055 aa6.9□□□□□ -1.3
CD44-225ENST00000527326 RRP15Q9Y3B9 282 aaKnown RBP6.9□□□□□ -1.3
CD44-225ENST00000527326 USP47Q96K76 1375 aa6.9□□□□□ -1.31
CD44-225ENST00000527326 NKTRP30414 1462 aaKnown RBP6.9□□□□□ -1.31
CD44-225ENST00000527326 TOP2BQ02880 1626 aa6.9□□□□□ -1.31
CD44-225ENST00000527326 ATP8B1O43520 1251 aa6.89□□□□□ -1.31
CD44-225ENST00000527326 CYP2E1P05181 493 aaPredicted RBP6.89□□□□□ -1.31
CD44-225ENST00000527326 BIRC2Q13490 618 aa6.89□□□□□ -1.31
CD44-225ENST00000527326 ZSCAN26Q16670 478 aa6.89□□□□□ -1.31
CD44-225ENST00000527326 TSGA10IPQ3SY00 556 aa6.89□□□□□ -1.31
CD44-225ENST00000527326 MRPL14Q6P1L8 145 aaKnown RBP6.89□□□□□ -1.31
CD44-225ENST00000527326 POM121Q96HA1 1249 aa6.89□□□□□ -1.31
CD44-225ENST00000527326 ERO1AQ96HE7 468 aa6.89□□□□□ -1.31
CD44-225ENST00000527326 CALR3Q96L12 384 aaKnown RBP6.89□□□□□ -1.31
CD44-225ENST00000527326 NXF1Q9UBU9 619 aaKnown RBP6.89□□□□□ -1.31
CD44-225ENST00000527326 ATP1B4Q9UN42 357 aaPredicted RBP6.89□□□□□ -1.31
CD44-225ENST00000527326 LRRFIP2Q9Y608 721 aaKnown RBP6.89□□□□□ -1.31
CD44-225ENST00000527326 MBD5Q9P267 1494 aa6.89□□□□□ -1.31
CD44-225ENST00000527326 KDM6BO15054 1643 aa6.88□□□□□ -1.31
CD44-225ENST00000527326 ATAD2Q6PL18 1390 aa6.88□□□□□ -1.31
CD44-225ENST00000527326 ZNF521Q96K83 1311 aa6.88□□□□□ -1.31
CD44-225ENST00000527326 SYCE3A1L190 88 aa6.88□□□□□ -1.31
CD44-225ENST00000527326 KIF2AO00139 706 aaPredicted RBP6.88□□□□□ -1.31
CD44-225ENST00000527326 WIPF1O43516 503 aa6.88□□□□□ -1.31
CD44-225ENST00000527326 NRDCO43847 1150 aa6.88□□□□□ -1.31
CD44-225ENST00000527326 GRM5P41594 1212 aa6.88□□□□□ -1.31
CD44-225ENST00000527326 GYS2P54840 703 aa6.88□□□□□ -1.31
CD44-225ENST00000527326 NR5A1Q13285 461 aa6.88□□□□□ -1.31
CD44-225ENST00000527326 MTA1Q13330 715 aa6.88□□□□□ -1.31
CD44-225ENST00000527326 SETDB1Q15047 1291 aa6.88□□□□□ -1.31
CD44-225ENST00000527326 PPP2R5AQ15172 486 aa6.88□□□□□ -1.31
CD44-225ENST00000527326 ZRSR1Q15695 479 aaKnown RBP6.88□□□□□ -1.31
CD44-225ENST00000527326 NBPF8Q3BBV2 869 aa6.88□□□□□ -1.31
CD44-225ENST00000527326 MAP9Q49MG5 647 aa6.88□□□□□ -1.31
CD44-225ENST00000527326 LCE2CQ5TA81 110 aa6.88□□□□□ -1.31
CD44-225ENST00000527326 NBPF14Q5TI25 921 aa6.88□□□□□ -1.31
CD44-225ENST00000527326 NFATC2IPQ8NCF5 419 aa6.88□□□□□ -1.31
CD44-225ENST00000527326 STAG1Q8WVM7 1258 aa6.88□□□□□ -1.31
CD44-225ENST00000527326 PURBQ96QR8 312 aaKnown RBP6.88□□□□□ -1.31
CD44-225ENST00000527326 KLF16Q9BXK1 252 aaPredicted RBP6.88□□□□□ -1.31
CD44-225ENST00000527326 ZFAND3Q9H8U3 227 aa6.88□□□□□ -1.31
CD44-225ENST00000527326 PRDM16Q9HAZ2 1276 aa6.88□□□□□ -1.31
CD44-225ENST00000527326 ZNF777Q9ULD5 760 aaPredicted RBP6.88□□□□□ -1.31
CD44-225ENST00000527326 SAMD9Q5K651 1589 aa6.87□□□□□ -1.31
CD44-225ENST00000527326 DENND4BO75064 1496 aaPredicted RBP6.87□□□□□ -1.31
CD44-225ENST00000527326 PTPRCP08575 1304 aa6.87□□□□□ -1.31
CD44-225ENST00000527326 MAGEB6P1A0A0J9YX57 407 aa6.87□□□□□ -1.31
CD44-225ENST00000527326 ANKRD33BA6NCL7 494 aa6.87□□□□□ -1.31
CD44-225ENST00000527326 C21orf2O43822 256 aa6.87□□□□□ -1.31
CD44-225ENST00000527326 IPO7O95373 1038 aaKnown RBP6.87□□□□□ -1.31
CD44-225ENST00000527326 ZIC2O95409 532 aaPredicted RBP6.87□□□□□ -1.31
CD44-225ENST00000527326 ADCY5O95622 1261 aa6.87□□□□□ -1.31
CD44-225ENST00000527326 NR3C2P08235 984 aa6.87□□□□□ -1.31
CD44-225ENST00000527326 TPM1P09493 284 aa6.87□□□□□ -1.31
CD44-225ENST00000527326 RBM6P78332 1123 aaKnown RBP6.87□□□□□ -1.31
CD44-225ENST00000527326 INSM1Q01101 510 aaPredicted RBP6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms