RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 KDM5CP41229 1560 aa9.98□□□□□ -0.81
LIMCH1-218ENST00000513024 RAB11FIP3O75154 756 aa9.98□□□□□ -0.81
LIMCH1-218ENST00000513024 RLBP1P12271 317 aa9.98□□□□□ -0.81
LIMCH1-218ENST00000513024 TUBB4BP68371 445 aa9.98□□□□□ -0.81
LIMCH1-218ENST00000513024 TSNAXIP1Q2TAA8 658 aa9.98□□□□□ -0.81
LIMCH1-218ENST00000513024 CCDC178Q5BJE1 867 aa9.98□□□□□ -0.81
LIMCH1-218ENST00000513024 CPLX4Q7Z7G2 160 aa9.98□□□□□ -0.81
LIMCH1-218ENST00000513024 PFDN1O60925 122 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 TMPOP42166 694 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 ARHGEF6Q15052 776 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 PPP2R5AQ15172 486 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 CERS3Q8IU89 383 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 SLF2Q8IX21 1173 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 CCDC12Q8WUD4 166 aaPredicted RBP9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 TTC14Q96N46 770 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 CASQ2O14958 399 aaPredicted RBP9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 MAP7Q14244 749 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 TBC1D32Q96NH3 1257 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 TSPYL2Q9H2G4 693 aaPredicted RBP9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 KIF14Q15058 1648 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 FAM135AQ9P2D6 1515 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 TUBBP07437 444 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 CCDC155Q8N6L0 562 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 WHAMMQ8TF30 809 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 PRAM1Q96QH2 718 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 TEX13AQ9BXU3 409 aaPredicted RBP9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 VCX3BQ9H321 246 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 CABP1Q9NZU7 370 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 CTAGE15A4D2H0 777 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 CTAGE8P0CG41 777 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 MYL6BP14649 208 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 PEX19P40855 299 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 ATP11AP98196 1134 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 GIMAP6Q6P9H5 292 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 CTAGE6Q86UF2 777 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 CTAGE4Q8IX94 777 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 DDX27Q96GQ7 796 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 HOMER2Q9NSB8 354 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 CTNNA3Q9UI47 895 aa9.97□□□□□ -0.81
LIMCH1-218ENST00000513024 ZWINTO95229 277 aa9.96□□□□□ -0.81
LIMCH1-218ENST00000513024 IGHMBP2P38935 993 aaKnown RBP9.96□□□□□ -0.81
LIMCH1-218ENST00000513024 ST5P78524 1137 aa9.96□□□□□ -0.81
LIMCH1-218ENST00000513024 IFT74Q96LB3 600 aa9.96□□□□□ -0.81
LIMCH1-218ENST00000513024 LIMCH1Q9UPQ0 1083 aa9.96□□□□□ -0.81
LIMCH1-218ENST00000513024 ERBINQ96RT1 1412 aa9.96□□□□□ -0.81
LIMCH1-218ENST00000513024 DUSP27Q5VZP5 1158 aa9.96□□□□□ -0.81
LIMCH1-218ENST00000513024 MIER3Q7Z3K6 550 aa9.96□□□□□ -0.81
LIMCH1-218ENST00000513024 UBAC1Q9BSL1 405 aa9.96□□□□□ -0.81
LIMCH1-218ENST00000513024 RTEL1-TNFRSF6BF6WH68 1400 aa9.96□□□□□ -0.81
LIMCH1-218ENST00000513024 PRAG1Q86YV5 1406 aa9.96□□□□□ -0.81
LIMCH1-218ENST00000513024 DISP3Q9P2K9 1392 aa9.96□□□□□ -0.82
LIMCH1-218ENST00000513024 ZEB2O60315 1214 aa9.96□□□□□ -0.82
LIMCH1-218ENST00000513024 IGHDP01880 384 aa9.96□□□□□ -0.82
LIMCH1-218ENST00000513024 CKAP4Q07065 602 aaKnown RBP9.96□□□□□ -0.82
LIMCH1-218ENST00000513024 ZNF530Q6P9A1 599 aaPredicted RBP9.96□□□□□ -0.82
LIMCH1-218ENST00000513024 TBC1D9Q6ZT07 1266 aa9.96□□□□□ -0.82
LIMCH1-218ENST00000513024 TTC12Q9H892 705 aaPredicted RBP9.96□□□□□ -0.82
LIMCH1-218ENST00000513024 BMP2KQ9NSY1 1161 aaPredicted RBP9.96□□□□□ -0.82
LIMCH1-218ENST00000513024 MIS18AQ9NYP9 233 aa9.96□□□□□ -0.82
LIMCH1-218ENST00000513024 ZRANB1Q9UGI0 708 aa9.96□□□□□ -0.82
LIMCH1-218ENST00000513024 ZNF772Q68DY9 489 aaPredicted RBP9.96□□□□□ -0.82
LIMCH1-218ENST00000513024 FSIP1Q8NA03 581 aa9.96□□□□□ -0.82
LIMCH1-218ENST00000513024 PHF8Q9UPP1 1060 aa9.96□□□□□ -0.82
LIMCH1-218ENST00000513024 TERF1P54274 439 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 ISM2Q6H9L7 571 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 CDK19Q9BWU1 502 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 DDX19AQ9NUU7 478 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 ANAPC4Q9UJX5 808 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 ARHGAP25P42331 645 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 CNPY4Q8N129 248 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 CCDC82Q8N4S0 544 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 CCDC150Q8NCX0 1101 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 CCDC110Q8TBZ0 833 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 STMN2Q93045 179 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 ZBTB9Q96C00 473 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 BOLA2Q9H3K6 86 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 SH2B1Q9NRF2 756 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 RNF216Q9NWF9 866 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 GLRX3O76003 335 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 RFC4P35249 363 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 FAM76AQ8TAV0 307 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 ALS2CR12Q96Q35 445 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 STX6O43752 255 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 PHACTR2O75167 634 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 CAVIN2O95810 425 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 ZBTB16Q05516 673 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 SETDB1Q15047 1291 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 LRSAM1Q6UWE0 723 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 C8orf76Q96K31 380 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 NUP88Q99567 741 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 ZC4H2Q9NQZ6 224 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 CEP126Q9P2H0 1117 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 HDAC9Q9UKV0 1011 aa9.95□□□□□ -0.82
LIMCH1-218ENST00000513024 PPFIA3O75145 1194 aa9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 MORC4Q8TE76 937 aa9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 JDP2Q8WYK2 163 aa9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 KIF1BPQ96EK5 621 aa9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 ZNF287Q9HBT7 754 aa9.94□□□□□ -0.82
LIMCH1-218ENST00000513024 ATP10BO94823 1461 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms