RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 SPDYE3A6NKU9 549 aa10.19□□□□□ -0.78
VCAN-208ENST00000512590 MTIF2P46199 727 aaKnown RBP10.19□□□□□ -0.78
VCAN-208ENST00000512590 ARHGAP29Q52LW3 1261 aa10.19□□□□□ -0.78
VCAN-208ENST00000512590 TBC1D31Q96DN5 1066 aa10.19□□□□□ -0.78
VCAN-208ENST00000512590 SPDYE2BA6NHP3 402 aa10.19□□□□□ -0.78
VCAN-208ENST00000512590 SPDYE6P0CI01 402 aa10.19□□□□□ -0.78
VCAN-208ENST00000512590 CASTP20810 708 aaKnown RBP10.19□□□□□ -0.78
VCAN-208ENST00000512590 TSTA3Q13630 321 aaPredicted RBP10.19□□□□□ -0.78
VCAN-208ENST00000512590 SUPT20HQ8NEM7 779 aa10.19□□□□□ -0.78
VCAN-208ENST00000512590 SMARCA2P51531 1590 aa10.19□□□□□ -0.78
VCAN-208ENST00000512590 INF2Q27J81 1249 aa10.19□□□□□ -0.78
VCAN-208ENST00000512590 BLOC1S2Q6QNY1 142 aa10.19□□□□□ -0.78
VCAN-208ENST00000512590 MARCKSP29966 332 aaPredicted RBP10.19□□□□□ -0.78
VCAN-208ENST00000512590 KRT32Q14532 448 aa10.19□□□□□ -0.78
VCAN-208ENST00000512590 GSTA5Q7RTV2 222 aa10.19□□□□□ -0.78
VCAN-208ENST00000512590 GOLGA6BA6NDN3 693 aa10.18□□□□□ -0.78
VCAN-208ENST00000512590 PRKAR2BP31323 418 aa10.18□□□□□ -0.78
VCAN-208ENST00000512590 KLHL10Q6JEL2 608 aa10.18□□□□□ -0.78
VCAN-208ENST00000512590 GCNAQ96QF7 691 aa10.18□□□□□ -0.78
VCAN-208ENST00000512590 AZI2Q9H6S1 392 aa10.18□□□□□ -0.78
VCAN-208ENST00000512590 IFIT3O14879 490 aaKnown RBP10.18□□□□□ -0.78
VCAN-208ENST00000512590 FIBPO43427 364 aa10.18□□□□□ -0.78
VCAN-208ENST00000512590 USO1O60763 962 aaKnown RBP10.18□□□□□ -0.78
VCAN-208ENST00000512590 DNM2P50570 870 aa10.18□□□□□ -0.78
VCAN-208ENST00000512590 PABPC4Q13310 644 aaKnown RBP eCLIP10.18□□□□□ -0.78
VCAN-208ENST00000512590 TWISTNBQ3B726 338 aaPredicted RBP10.18□□□□□ -0.78
VCAN-208ENST00000512590 RTEL1Q9NZ71 1219 aa10.18□□□□□ -0.78
VCAN-208ENST00000512590 KRT28Q7Z3Y7 464 aa10.18□□□□□ -0.78
VCAN-208ENST00000512590 TTC30BQ8N4P2 665 aa10.18□□□□□ -0.78
VCAN-208ENST00000512590 TNMDQ9H2S6 317 aa10.18□□□□□ -0.78
VCAN-208ENST00000512590 STX8Q9UNK0 236 aa10.18□□□□□ -0.78
VCAN-208ENST00000512590 U3KPZ7 1027 aaPredicted RBP10.18□□□□□ -0.78
VCAN-208ENST00000512590 SCAPERQ9BY12 1400 aa10.18□□□□□ -0.78
VCAN-208ENST00000512590 PPP2R5CQ13362 524 aa10.18□□□□□ -0.78
VCAN-208ENST00000512590 SPECC1Q5M775 1068 aa10.18□□□□□ -0.78
VCAN-208ENST00000512590 TRAPPC3LQ5T215 181 aa10.18□□□□□ -0.78
VCAN-208ENST00000512590 DAAM2Q86T65 1068 aa10.18□□□□□ -0.78
VCAN-208ENST00000512590 MICALL1Q8N3F8 863 aa10.18□□□□□ -0.78
VCAN-208ENST00000512590 RTEL1-TNFRSF6BF6WH68 1400 aa10.18□□□□□ -0.78
VCAN-208ENST00000512590 CDR2Q01850 454 aa10.17□□□□□ -0.78
VCAN-208ENST00000512590 BIRC3Q13489 604 aa10.17□□□□□ -0.78
VCAN-208ENST00000512590 TTF1Q15361 905 aaPredicted RBP10.17□□□□□ -0.78
VCAN-208ENST00000512590 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.17□□□□□ -0.78
VCAN-208ENST00000512590 CADPS2Q86UW7 1296 aa10.17□□□□□ -0.78
VCAN-208ENST00000512590 LBHD1Q9BQE6 289 aaPredicted RBP10.17□□□□□ -0.78
VCAN-208ENST00000512590 FAM114A2Q9NRY5 505 aa10.17□□□□□ -0.78
VCAN-208ENST00000512590 TSPYL2Q9H2G4 693 aaPredicted RBP10.17□□□□□ -0.78
VCAN-208ENST00000512590 NOL3O60936 208 aaKnown RBP10.17□□□□□ -0.78
VCAN-208ENST00000512590 SYCE3A1L190 88 aa10.17□□□□□ -0.78
VCAN-208ENST00000512590 TYW5A2RUC4 315 aaKnown RBP10.17□□□□□ -0.78
VCAN-208ENST00000512590 CDAN1Q8IWY9 1227 aa10.17□□□□□ -0.78
VCAN-208ENST00000512590 RPGRIP1LQ68CZ1 1315 aa10.17□□□□□ -0.78
VCAN-208ENST00000512590 PLCB3Q01970 1234 aa10.17□□□□□ -0.78
VCAN-208ENST00000512590 CFAP157Q5JU67 520 aa10.17□□□□□ -0.78
VCAN-208ENST00000512590 CCDC50Q8IVM0 306 aa10.17□□□□□ -0.78
VCAN-208ENST00000512590 SULF1Q8IWU6 871 aa10.17□□□□□ -0.78
VCAN-208ENST00000512590 NAP1L4Q99733 375 aaKnown RBP10.17□□□□□ -0.78
VCAN-208ENST00000512590 ZBTB3Q9H5J0 574 aa10.17□□□□□ -0.78
VCAN-208ENST00000512590 ZNF213O14771 459 aa10.16□□□□□ -0.78
VCAN-208ENST00000512590 KRT33BQ14525 404 aa10.16□□□□□ -0.78
VCAN-208ENST00000512590 MSL1Q68DK7 614 aa10.16□□□□□ -0.78
VCAN-208ENST00000512590 TPTE2Q6XPS3 522 aa10.16□□□□□ -0.78
VCAN-208ENST00000512590 TIMELESSQ9UNS1 1208 aa10.16□□□□□ -0.78
VCAN-208ENST00000512590 PDIA4P13667 645 aaKnown RBP10.16□□□□□ -0.78
VCAN-208ENST00000512590 RRP1P56182 461 aaKnown RBP10.16□□□□□ -0.78
VCAN-208ENST00000512590 CCDC65Q8IXS2 484 aa10.16□□□□□ -0.78
VCAN-208ENST00000512590 GNAT3A8MTJ3 354 aa10.16□□□□□ -0.78
VCAN-208ENST00000512590 ZBED4O75132 1171 aa10.16□□□□□ -0.78
VCAN-208ENST00000512590 GADL1Q6ZQY3 521 aa10.16□□□□□ -0.78
VCAN-208ENST00000512590 FAM114A1Q8IWE2 563 aa10.16□□□□□ -0.78
VCAN-208ENST00000512590 RAB3IPQ96QF0 476 aaPredicted RBP10.16□□□□□ -0.78
VCAN-208ENST00000512590 PAGR1Q9BTK6 254 aa10.16□□□□□ -0.78
VCAN-208ENST00000512590 PKD2L1Q9P0L9 805 aa10.16□□□□□ -0.78
VCAN-208ENST00000512590 TACC3Q9Y6A5 838 aa10.16□□□□□ -0.78
VCAN-208ENST00000512590 NEK4P51957 841 aa10.16□□□□□ -0.78
VCAN-208ENST00000512590 FASTKD5Q7L8L6 764 aaKnown RBP10.16□□□□□ -0.78
VCAN-208ENST00000512590 CCDC102AQ96A19 550 aa10.16□□□□□ -0.78
VCAN-208ENST00000512590 NAP1L3Q99457 506 aaPredicted RBP10.16□□□□□ -0.78
VCAN-208ENST00000512590 CLSTN2Q9H4D0 955 aa10.16□□□□□ -0.78
VCAN-208ENST00000512590 KIAA1841Q6NSI8 718 aa10.15□□□□□ -0.78
VCAN-208ENST00000512590 RDH13Q8NBN7 331 aa10.15□□□□□ -0.78
VCAN-208ENST00000512590 MED10Q9BTT4 135 aa10.15□□□□□ -0.78
VCAN-208ENST00000512590 FOXO3O43524 673 aa10.15□□□□□ -0.78
VCAN-208ENST00000512590 AMOTQ4VCS5 1084 aa10.15□□□□□ -0.78
VCAN-208ENST00000512590 LARP1BQ659C4 914 aaKnown RBP10.15□□□□□ -0.78
VCAN-208ENST00000512590 PDRG1Q9NUG6 133 aa10.15□□□□□ -0.78
VCAN-208ENST00000512590 NSFL1CQ9UNZ2 370 aaKnown RBP10.15□□□□□ -0.78
VCAN-208ENST00000512590 GOLGA6CA6NDK9 693 aa10.15□□□□□ -0.78
VCAN-208ENST00000512590 E7EVH7 732 aa10.15□□□□□ -0.78
VCAN-208ENST00000512590 STK10O94804 968 aaKnown RBP10.15□□□□□ -0.78
VCAN-208ENST00000512590 GOLGA6DP0CG33 693 aa10.15□□□□□ -0.78
VCAN-208ENST00000512590 SPDYE1Q8NFV5 336 aaPredicted RBP10.15□□□□□ -0.78
VCAN-208ENST00000512590 GOLGA6AQ9NYA3 693 aa10.15□□□□□ -0.78
VCAN-208ENST00000512590 ATP2A1O14983 1001 aa10.15□□□□□ -0.78
VCAN-208ENST00000512590 PAFAH1B1P43034 410 aa10.15□□□□□ -0.78
VCAN-208ENST00000512590 TRPC3Q13507 836 aa10.15□□□□□ -0.78
VCAN-208ENST00000512590 SLC8A2Q9UPR5 921 aa10.15□□□□□ -0.78
VCAN-208ENST00000512590 RAB3GAP1Q15042 981 aa10.15□□□□□ -0.79
VCAN-208ENST00000512590 MAP3K11Q16584 847 aa10.15□□□□□ -0.79
VCAN-208ENST00000512590 KIAA0753Q2KHM9 967 aa10.15□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms