RNA–Protein interactions for RNA: ENST00000504663.1

TPM3-217, Transcript of tropomyosin 3, humanhuman

TSL 2

Gene TPM3, Length 870 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-217ENST00000504663 HDAC5Q9UQL6 1122 aa12.92□□□□□ -0.34
TPM3-217ENST00000504663 ZNF652Q9Y2D9 606 aa12.92□□□□□ -0.34
TPM3-217ENST00000504663 TAF1P21675 1872 aa12.91□□□□□ -0.34
TPM3-217ENST00000504663 IRS4O14654 1257 aaPredicted RBP12.91□□□□□ -0.34
TPM3-217ENST00000504663 SASH1O94885 1247 aa12.91□□□□□ -0.34
TPM3-217ENST00000504663 EN1Q05925 392 aaPredicted RBP12.91□□□□□ -0.34
TPM3-217ENST00000504663 FAM161AQ3B820 660 aa12.91□□□□□ -0.34
TPM3-217ENST00000504663 TRAPPC3LQ5T215 181 aa12.91□□□□□ -0.34
TPM3-217ENST00000504663 C3orf67Q6ZVT6 689 aa12.91□□□□□ -0.34
TPM3-217ENST00000504663 PLEKHM2Q8IWE5 1019 aa12.91□□□□□ -0.34
TPM3-217ENST00000504663 TTLL11Q8NHH1 800 aa12.91□□□□□ -0.34
TPM3-217ENST00000504663 TRMT112Q9UI30 125 aaKnown RBP12.91□□□□□ -0.34
TPM3-217ENST00000504663 RTL9Q8NET4 1388 aa12.91□□□□□ -0.34
TPM3-217ENST00000504663 SH3TC1Q8TE82 1336 aa12.9□□□□□ -0.34
TPM3-217ENST00000504663 SPDYE4A6NLX3 237 aa12.9□□□□□ -0.34
TPM3-217ENST00000504663 SURF6O75683 361 aaKnown RBP12.9□□□□□ -0.34
TPM3-217ENST00000504663 CTSWP56202 376 aa12.9□□□□□ -0.34
TPM3-217ENST00000504663 NFIXQ14938 502 aa12.9□□□□□ -0.34
TPM3-217ENST00000504663 ATG9AQ7Z3C6 839 aa12.9□□□□□ -0.34
TPM3-217ENST00000504663 COL23A1Q86Y22 540 aaPredicted RBP12.9□□□□□ -0.34
TPM3-217ENST00000504663 RHPN1Q8TCX5 695 aa12.9□□□□□ -0.34
TPM3-217ENST00000504663 UTP14AQ9BVJ6 771 aaKnown RBP12.9□□□□□ -0.34
TPM3-217ENST00000504663 COL11A2P13942 1736 aaPredicted RBP12.9□□□□□ -0.34
TPM3-217ENST00000504663 RAB11FIP3O75154 756 aa12.89□□□□□ -0.35
TPM3-217ENST00000504663 TM4SF1P30408 202 aa12.89□□□□□ -0.35
TPM3-217ENST00000504663 DDR1Q08345 913 aa12.89□□□□□ -0.35
TPM3-217ENST00000504663 C8orf34Q49A92 452 aa12.89□□□□□ -0.35
TPM3-217ENST00000504663 ERFEQ4G0M1 354 aa12.89□□□□□ -0.35
TPM3-217ENST00000504663 DEFB132Q7Z7B7 95 aa12.89□□□□□ -0.35
TPM3-217ENST00000504663 NPM2Q86SE8 214 aaKnown RBP12.89□□□□□ -0.35
TPM3-217ENST00000504663 NUTM1Q86Y26 1132 aa12.89□□□□□ -0.35
TPM3-217ENST00000504663 LRRCC1Q9C099 1032 aa12.89□□□□□ -0.35
TPM3-217ENST00000504663 CARMIL3Q8ND23 1372 aa12.89□□□□□ -0.35
TPM3-217ENST00000504663 ZNF609O15014 1411 aa12.88□□□□□ -0.35
TPM3-217ENST00000504663 APBB1O00213 710 aa12.88□□□□□ -0.35
TPM3-217ENST00000504663 TULP1O00294 542 aaPredicted RBP12.88□□□□□ -0.35
TPM3-217ENST00000504663 PDE8AO60658 829 aa12.88□□□□□ -0.35
TPM3-217ENST00000504663 ZPR1O75312 459 aa12.88□□□□□ -0.35
TPM3-217ENST00000504663 HCLS1P14317 486 aaPredicted RBP12.88□□□□□ -0.35
TPM3-217ENST00000504663 GSPT1P15170 499 aaKnown RBP12.88□□□□□ -0.35
TPM3-217ENST00000504663 RFC4P35249 363 aa12.88□□□□□ -0.35
TPM3-217ENST00000504663 SLC10A5Q5PT55 438 aa12.88□□□□□ -0.35
TPM3-217ENST00000504663 SAMD1Q6SPF0 538 aaPredicted RBP12.88□□□□□ -0.35
TPM3-217ENST00000504663 GREM2Q9H772 168 aa12.88□□□□□ -0.35
TPM3-217ENST00000504663 TSHZ2Q9NRE2 1034 aa12.88□□□□□ -0.35
TPM3-217ENST00000504663 FAM177BA6PVY3 158 aa12.87□□□□□ -0.35
TPM3-217ENST00000504663 KIF1BPQ96EK5 621 aa12.87□□□□□ -0.35
TPM3-217ENST00000504663 ZNF594Q96JF6 807 aaPredicted RBP12.87□□□□□ -0.35
TPM3-217ENST00000504663 PUS3Q9BZE2 481 aaKnown RBP12.87□□□□□ -0.35
TPM3-217ENST00000504663 OSBPL3Q9H4L5 887 aa12.87□□□□□ -0.35
TPM3-217ENST00000504663 IL1RAPL2Q9NP60 686 aa12.87□□□□□ -0.35
TPM3-217ENST00000504663 LRRC37AA6NMS7 1700 aa12.87□□□□□ -0.35
TPM3-217ENST00000504663 LRRC24Q50LG9 513 aa12.86□□□□□ -0.35
TPM3-217ENST00000504663 BICDL1Q6ZP65 573 aa12.86□□□□□ -0.35
TPM3-217ENST00000504663 PAXIP1Q6ZW49 1069 aaPredicted RBP12.86□□□□□ -0.35
TPM3-217ENST00000504663 SIL1Q9H173 461 aa12.86□□□□□ -0.35
TPM3-217ENST00000504663 STAP2Q9UGK3 403 aa12.86□□□□□ -0.35
TPM3-217ENST00000504663 EYA2O00167 538 aa12.85□□□□□ -0.35
TPM3-217ENST00000504663 POLRMTO00411 1230 aaKnown RBP12.85□□□□□ -0.35
TPM3-217ENST00000504663 CIAO1O76071 339 aa12.85□□□□□ -0.35
TPM3-217ENST00000504663 ITGA6P23229 1130 aa12.85□□□□□ -0.35
TPM3-217ENST00000504663 SF3B3Q15393 1217 aaKnown RBP12.85□□□□□ -0.35
TPM3-217ENST00000504663 SLC15A2Q16348 729 aa12.85□□□□□ -0.35
TPM3-217ENST00000504663 HSP90AB4PQ58FF6 505 aa12.85□□□□□ -0.35
TPM3-217ENST00000504663 PRR5LQ6MZQ0 368 aa12.85□□□□□ -0.35
TPM3-217ENST00000504663 EAF2Q96CJ1 260 aaPredicted RBP12.85□□□□□ -0.35
TPM3-217ENST00000504663 CCDC85AQ96PX6 553 aaPredicted RBP12.85□□□□□ -0.35
TPM3-217ENST00000504663 SETDB2Q96T68 719 aa12.85□□□□□ -0.35
TPM3-217ENST00000504663 TLR7Q9NYK1 1049 aaKnown RBP12.85□□□□□ -0.35
TPM3-217ENST00000504663 LTBP1Q14766 1721 aa12.85□□□□□ -0.35
TPM3-217ENST00000504663 AK9Q5TCS8 1911 aa12.84□□□□□ -0.35
TPM3-217ENST00000504663 HMGB2P26583 209 aaKnown RBP12.84□□□□□ -0.35
TPM3-217ENST00000504663 PDE1AP54750 535 aa12.84□□□□□ -0.35
TPM3-217ENST00000504663 BMP2KLQ5H9B9 411 aa12.84□□□□□ -0.35
TPM3-217ENST00000504663 TTC22Q5TAA0 569 aa12.84□□□□□ -0.35
TPM3-217ENST00000504663 ERC1Q8IUD2 1116 aa12.84□□□□□ -0.35
TPM3-217ENST00000504663 VGLL2Q8N8G2 317 aa12.84□□□□□ -0.35
TPM3-217ENST00000504663 PI4K2BQ8TCG2 481 aa12.84□□□□□ -0.35
TPM3-217ENST00000504663 BACH2Q9BYV9 841 aa12.84□□□□□ -0.35
TPM3-217ENST00000504663 SEC31BQ9NQW1 1179 aa12.84□□□□□ -0.35
TPM3-217ENST00000504663 TFCP2L1Q9NZI6 479 aa12.84□□□□□ -0.35
TPM3-217ENST00000504663 CHMP3Q9Y3E7 222 aa12.84□□□□□ -0.35
TPM3-217ENST00000504663 AOX1Q06278 1338 aa12.84□□□□□ -0.35
TPM3-217ENST00000504663 KIAA1551Q9HCM1 1747 aa12.83□□□□□ -0.36
TPM3-217ENST00000504663 BAG6P46379 1132 aa12.83□□□□□ -0.36
TPM3-217ENST00000504663 TFCP2Q12800 502 aa12.83□□□□□ -0.36
TPM3-217ENST00000504663 TSHZ3Q63HK5 1081 aa12.83□□□□□ -0.36
TPM3-217ENST00000504663 NYXQ9GZU5 481 aa12.83□□□□□ -0.36
TPM3-217ENST00000504663 RIPOR2Q9Y4F9 1068 aa12.83□□□□□ -0.36
TPM3-217ENST00000504663 MX1P20591 662 aa12.82□□□□□ -0.36
TPM3-217ENST00000504663 IL15P40933 162 aaPredicted RBP12.82□□□□□ -0.36
TPM3-217ENST00000504663 G3BP1Q13283 466 aaKnown RBP eCLIP12.82□□□□□ -0.363e-7■■□□□ 12.2
TPM3-217ENST00000504663 NBPF5PQ86XG9 351 aaPredicted RBP12.82□□□□□ -0.36
TPM3-217ENST00000504663 CCDC24Q8N4L8 307 aa12.82□□□□□ -0.36
TPM3-217ENST00000504663 FLAD1Q8NFF5 587 aa12.82□□□□□ -0.36
TPM3-217ENST00000504663 PDGFDQ9GZP0 370 aaPredicted RBP12.82□□□□□ -0.36
TPM3-217ENST00000504663 GPR108Q9NPR9 543 aa12.82□□□□□ -0.36
TPM3-217ENST00000504663 DBNLQ9UJU6 430 aaKnown RBP12.82□□□□□ -0.36
TPM3-217ENST00000504663 AKAP11Q9UKA4 1901 aa12.82□□□□□ -0.36
TPM3-217ENST00000504663 DLEC1Q9Y238 1755 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms