RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 SETDB2Q96T68 719 aa12.73□□□□□ -0.37
NUP54-203ENST00000504173 MYD88Q99836 296 aa12.73□□□□□ -0.37
NUP54-203ENST00000504173 METTL22Q9BUU2 404 aaPredicted RBP12.73□□□□□ -0.37
NUP54-203ENST00000504173 API5Q9BZZ5 524 aaKnown RBP12.73□□□□□ -0.37
NUP54-203ENST00000504173 ANKRD36CQ5JPF3 1778 aa12.73□□□□□ -0.37
NUP54-203ENST00000504173 CASP8AP2Q9UKL3 1982 aa12.72□□□□□ -0.37
NUP54-203ENST00000504173 FER1L6Q2WGJ9 1857 aa12.72□□□□□ -0.37
NUP54-203ENST00000504173 CARMIL3Q8ND23 1372 aa12.72□□□□□ -0.37
NUP54-203ENST00000504173 CYP4F22Q6NT55 531 aa12.72□□□□□ -0.37
NUP54-203ENST00000504173 PNMA8AQ86V59 439 aaPredicted RBP12.72□□□□□ -0.37
NUP54-203ENST00000504173 ZNF219Q9P2Y4 722 aaPredicted RBP12.72□□□□□ -0.37
NUP54-203ENST00000504173 UBN2Q6ZU65 1347 aa12.71□□□□□ -0.37
NUP54-203ENST00000504173 ATP5J2-PTCD1G3V325 749 aa12.71□□□□□ -0.37
NUP54-203ENST00000504173 NPHP1O15259 732 aa12.71□□□□□ -0.37
NUP54-203ENST00000504173 PARP10Q53GL7 1025 aa12.71□□□□□ -0.37
NUP54-203ENST00000504173 EAPPQ56P03 285 aaPredicted RBP12.71□□□□□ -0.37
NUP54-203ENST00000504173 ZKSCAN2Q63HK3 967 aa12.71□□□□□ -0.37
NUP54-203ENST00000504173 SLC4A10Q6U841 1118 aa12.71□□□□□ -0.37
NUP54-203ENST00000504173 ZNF34Q8IZ26 560 aa12.71□□□□□ -0.37
NUP54-203ENST00000504173 ARHGAP45Q92619 1136 aa12.71□□□□□ -0.37
NUP54-203ENST00000504173 ISCA1Q9BUE6 129 aa12.71□□□□□ -0.37
NUP54-203ENST00000504173 FAM177BA6PVY3 158 aa12.7□□□□□ -0.38
NUP54-203ENST00000504173 SERPINB2P05120 415 aa12.7□□□□□ -0.38
NUP54-203ENST00000504173 MAP1SQ66K74 1059 aaPredicted RBP12.7□□□□□ -0.38
NUP54-203ENST00000504173 ATF7IPQ6VMQ6 1270 aa12.7□□□□□ -0.38
NUP54-203ENST00000504173 NBPF5PQ86XG9 351 aaPredicted RBP12.7□□□□□ -0.38
NUP54-203ENST00000504173 TAOK3Q9H2K8 898 aa12.7□□□□□ -0.38
NUP54-203ENST00000504173 HACL1Q9UJ83 578 aa12.7□□□□□ -0.38
NUP54-203ENST00000504173 CLEC11AQ9Y240 323 aa12.7□□□□□ -0.38
NUP54-203ENST00000504173 CUL9Q8IWT3 2517 aa12.7□□□□□ -0.38
NUP54-203ENST00000504173 H0YIN7 160 aa12.69□□□□□ -0.38
NUP54-203ENST00000504173 TRIM27P14373 513 aa12.69□□□□□ -0.38
NUP54-203ENST00000504173 EPHX2P34913 555 aa12.69□□□□□ -0.38
NUP54-203ENST00000504173 CWF19L2Q2TBE0 894 aaKnown RBP12.69□□□□□ -0.38
NUP54-203ENST00000504173 SUSD4Q5VX71 490 aa12.69□□□□□ -0.38
NUP54-203ENST00000504173 PPP1R42Q7Z4L9 355 aa12.69□□□□□ -0.38
NUP54-203ENST00000504173 NLRP10Q86W26 655 aa12.69□□□□□ -0.38
NUP54-203ENST00000504173 C2CD5Q86YS7 1000 aa12.69□□□□□ -0.38
NUP54-203ENST00000504173 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.69□□□□□ -0.38
NUP54-203ENST00000504173 NYXQ9GZU5 481 aa12.69□□□□□ -0.38
NUP54-203ENST00000504173 CWC25Q9NXE8 425 aaPredicted RBP12.69□□□□□ -0.38
NUP54-203ENST00000504173 TLL2Q9Y6L7 1015 aa12.69□□□□□ -0.38
NUP54-203ENST00000504173 AFDNP55196 1824 aaKnown RBP12.68□□□□□ -0.38
NUP54-203ENST00000504173 NEURL1BA8MQ27 555 aa12.68□□□□□ -0.38
NUP54-203ENST00000504173 AOC2O75106 756 aa12.68□□□□□ -0.38
NUP54-203ENST00000504173 IGKV5-2P06315 115 aa12.68□□□□□ -0.38
NUP54-203ENST00000504173 GTF2E1P29083 439 aaPredicted RBP12.68□□□□□ -0.38
NUP54-203ENST00000504173 TRIM28Q13263 835 aaKnown RBP12.68□□□□□ -0.38
NUP54-203ENST00000504173 BEND3Q5T5X7 828 aa12.68□□□□□ -0.38
NUP54-203ENST00000504173 PAXIP1Q6ZW49 1069 aaPredicted RBP12.68□□□□□ -0.38
NUP54-203ENST00000504173 CNBD1Q8NA66 436 aa12.68□□□□□ -0.38
NUP54-203ENST00000504173 CCDC191Q8NCU4 936 aa12.68□□□□□ -0.38
NUP54-203ENST00000504173 LINS1Q8NG48 757 aa12.68□□□□□ -0.38
NUP54-203ENST00000504173 UTP14AQ9BVJ6 771 aaKnown RBP12.68□□□□□ -0.38
NUP54-203ENST00000504173 SRCIN1Q9C0H9 1055 aa12.68□□□□□ -0.38
NUP54-203ENST00000504173 IBTKQ9P2D0 1353 aaPredicted RBP12.68□□□□□ -0.38
NUP54-203ENST00000504173 NTSR2O95665 410 aa12.67□□□□□ -0.38
NUP54-203ENST00000504173 FXR1P51114 621 aaKnown RBP eCLIP12.67□□□□□ -0.38
NUP54-203ENST00000504173 ST5P78524 1137 aa12.67□□□□□ -0.38
NUP54-203ENST00000504173 PRR5LQ6MZQ0 368 aa12.67□□□□□ -0.38
NUP54-203ENST00000504173 TPTE2Q6XPS3 522 aa12.67□□□□□ -0.38
NUP54-203ENST00000504173 FTSJ3Q8IY81 847 aaKnown RBP12.67□□□□□ -0.38
NUP54-203ENST00000504173 CLUAP1Q96AJ1 413 aa12.67□□□□□ -0.38
NUP54-203ENST00000504173 HHIPL1Q96JK4 782 aa12.67□□□□□ -0.38
NUP54-203ENST00000504173 TRMT112Q9UI30 125 aaKnown RBP12.67□□□□□ -0.38
NUP54-203ENST00000504173 PDZRN3Q9UPQ7 1066 aa12.67□□□□□ -0.38
NUP54-203ENST00000504173 TNNQ9UQP3 1299 aa12.67□□□□□ -0.38
NUP54-203ENST00000504173 ABCC4O15439 1325 aa12.66□□□□□ -0.38
NUP54-203ENST00000504173 DLL1O00548 723 aa12.66□□□□□ -0.38
NUP54-203ENST00000504173 C21orf2O43822 256 aa12.66□□□□□ -0.38
NUP54-203ENST00000504173 PLIN1O60240 522 aa12.66□□□□□ -0.38
NUP54-203ENST00000504173 ALDH1L1O75891 902 aa12.66□□□□□ -0.38
NUP54-203ENST00000504173 CCT4P50991 539 aaKnown RBP12.66□□□□□ -0.38
NUP54-203ENST00000504173 NUTM1Q86Y26 1132 aa12.66□□□□□ -0.38
NUP54-203ENST00000504173 DZIP1LQ8IYY4 767 aaKnown RBP12.66□□□□□ -0.38
NUP54-203ENST00000504173 RNF123Q5XPI4 1314 aa12.65□□□□□ -0.38
NUP54-203ENST00000504173 SH3TC1Q8TE82 1336 aa12.65□□□□□ -0.38
NUP54-203ENST00000504173 MS4A1P11836 297 aa12.65□□□□□ -0.38
NUP54-203ENST00000504173 GRM1Q13255 1194 aa12.65□□□□□ -0.38
NUP54-203ENST00000504173 GCKRQ14397 625 aa12.65□□□□□ -0.38
NUP54-203ENST00000504173 CST9Q5W186 159 aa12.65□□□□□ -0.38
NUP54-203ENST00000504173 CCDC24Q8N4L8 307 aa12.65□□□□□ -0.38
NUP54-203ENST00000504173 PCCAP05165 728 aaPredicted RBP12.64□□□□□ -0.39
NUP54-203ENST00000504173 RRP1P56182 461 aaKnown RBP12.64□□□□□ -0.39
NUP54-203ENST00000504173 RTL5Q5HYW3 569 aaPredicted RBP12.64□□□□□ -0.39
NUP54-203ENST00000504173 SOGA3Q5TF21 947 aa12.64□□□□□ -0.39
NUP54-203ENST00000504173 TMEM57Q8N5G2 664 aa12.64□□□□□ -0.39
NUP54-203ENST00000504173 ZBTB38Q8NAP3 1195 aaPredicted RBP12.64□□□□□ -0.39
NUP54-203ENST00000504173 JARID2Q92833 1246 aaPredicted RBP12.64□□□□□ -0.39
NUP54-203ENST00000504173 FAM89AQ96GI7 184 aa12.64□□□□□ -0.39
NUP54-203ENST00000504173 C9orf78Q9NZ63 289 aaPredicted RBP12.64□□□□□ -0.39
NUP54-203ENST00000504173 ABCC12Q96J65 1359 aa12.64□□□□□ -0.39
NUP54-203ENST00000504173 A0A0C4DFX4 3053 aa12.64□□□□□ -0.39
NUP54-203ENST00000504173 ZNF541Q9H0D2 1346 aa12.63□□□□□ -0.39
NUP54-203ENST00000504173 GRM8O00222 908 aa12.63□□□□□ -0.39
NUP54-203ENST00000504173 IRS4O14654 1257 aaPredicted RBP12.63□□□□□ -0.39
NUP54-203ENST00000504173 CENPBP07199 599 aaPredicted RBP12.63□□□□□ -0.39
NUP54-203ENST00000504173 INTS3Q68E01 1043 aaKnown RBP12.63□□□□□ -0.39
NUP54-203ENST00000504173 UBE3BQ7Z3V4 1068 aa12.63□□□□□ -0.39
NUP54-203ENST00000504173 SYNE4Q8N205 404 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms