RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 USP50Q70EL3 339 aaPredicted RBP28.73■■■□□ 2.19
HDDC3-203ENST00000494993 ZNRF3Q9ULT6 936 aa28.73■■■□□ 2.19
HDDC3-203ENST00000494993 DUOX1Q9NRD9 1551 aa28.72■■■□□ 2.19
HDDC3-203ENST00000494993 DUSP27Q5VZP5 1158 aa28.72■■■□□ 2.19
HDDC3-203ENST00000494993 ZNF428Q96B54 188 aa28.72■■■□□ 2.19
HDDC3-203ENST00000494993 ISCA1Q9BUE6 129 aa28.72■■■□□ 2.19
HDDC3-203ENST00000494993 MBIPQ9NS73 344 aa28.72■■■□□ 2.19
HDDC3-203ENST00000494993 CXCL9Q07325 125 aa28.71■■■□□ 2.19
HDDC3-203ENST00000494993 KIAA2012Q0VF49 1180 aa28.71■■■□□ 2.19
HDDC3-203ENST00000494993 HYPKQ9NX55 129 aa28.71■■■□□ 2.19
HDDC3-203ENST00000494993 RASSF10A6NK89 507 aa28.7■■■□□ 2.18
HDDC3-203ENST00000494993 TMC4Q7Z404 712 aa28.7■■■□□ 2.18
HDDC3-203ENST00000494993 GPRC5DQ9NZD1 345 aa28.7■■■□□ 2.18
HDDC3-203ENST00000494993 FOXN1O15353 648 aa28.69■■■□□ 2.18
HDDC3-203ENST00000494993 ZNF853P0CG23 659 aa28.69■■■□□ 2.18
HDDC3-203ENST00000494993 DEFB115Q30KQ5 88 aa28.69■■■□□ 2.18
HDDC3-203ENST00000494993 FAM89AQ96GI7 184 aa28.69■■■□□ 2.18
HDDC3-203ENST00000494993 ATP5J2-PTCD1G3V325 749 aa28.68■■■□□ 2.18
HDDC3-203ENST00000494993 ADARB2Q9NS39 739 aaKnown RBP28.68■■■□□ 2.18
HDDC3-203ENST00000494993 CAPN15O75808 1086 aa28.67■■■□□ 2.18
HDDC3-203ENST00000494993 ABT1Q9ULW3 272 aaKnown RBP28.67■■■□□ 2.18
HDDC3-203ENST00000494993 APAF1O14727 1248 aa28.66■■■□□ 2.18
HDDC3-203ENST00000494993 SF3B3Q15393 1217 aaKnown RBP28.66■■■□□ 2.18
HDDC3-203ENST00000494993 CIAPIN1Q6FI81 312 aa28.66■■■□□ 2.18
HDDC3-203ENST00000494993 IFT57Q9NWB7 429 aa28.66■■■□□ 2.18
HDDC3-203ENST00000494993 COL4A1P02462 1669 aa28.66■■■□□ 2.18
HDDC3-203ENST00000494993 GMPSP49915 693 aaPredicted RBP28.65■■■□□ 2.18
HDDC3-203ENST00000494993 FMR1Q06787 632 aaKnown RBP eCLIP28.65■■■□□ 2.18
HDDC3-203ENST00000494993 TRIM28Q13263 835 aaKnown RBP28.65■■■□□ 2.18
HDDC3-203ENST00000494993 CDHR2Q9BYE9 1310 aa28.65■■■□□ 2.18
HDDC3-203ENST00000494993 CELF1Q92879 486 aaKnown RBP28.64■■■□□ 2.18
HDDC3-203ENST00000494993 AIDAQ96BJ3 306 aa28.64■■■□□ 2.18
HDDC3-203ENST00000494993 THSD7BQ9C0I4 1608 aa28.64■■■□□ 2.18
HDDC3-203ENST00000494993 RAD17O75943 681 aa28.63■■■□□ 2.17
HDDC3-203ENST00000494993 GNAI1P63096 354 aa28.63■■■□□ 2.17
HDDC3-203ENST00000494993 CALD1Q05682 793 aaKnown RBP28.63■■■□□ 2.17
HDDC3-203ENST00000494993 TNIP1Q15025 636 aa28.63■■■□□ 2.17
HDDC3-203ENST00000494993 WBP1LQ9NX94 342 aa28.63■■■□□ 2.17
HDDC3-203ENST00000494993 WDR33Q9C0J8 1336 aaKnown RBP28.63■■■□□ 2.17
HDDC3-203ENST00000494993 RTL5Q5HYW3 569 aaPredicted RBP28.62■■■□□ 2.17
HDDC3-203ENST00000494993 YDJCA8MPS7 323 aa28.61■■■□□ 2.17
HDDC3-203ENST00000494993 TRAF5O00463 557 aa28.61■■■□□ 2.17
HDDC3-203ENST00000494993 CTCFP49711 727 aaPredicted RBP28.61■■■□□ 2.17
HDDC3-203ENST00000494993 GOLGA2Q08379 1002 aa28.61■■■□□ 2.17
HDDC3-203ENST00000494993 RIC3Q7Z5B4 369 aa28.61■■■□□ 2.17
HDDC3-203ENST00000494993 BCL2L13Q9BXK5 485 aa28.61■■■□□ 2.17
HDDC3-203ENST00000494993 PHAXQ9H814 394 aaKnown RBP28.61■■■□□ 2.17
HDDC3-203ENST00000494993 PRDM10Q9NQV6 1147 aa28.61■■■□□ 2.17
HDDC3-203ENST00000494993 IRS4O14654 1257 aaPredicted RBP28.6■■■□□ 2.17
HDDC3-203ENST00000494993 ELL2O00472 640 aaPredicted RBP28.59■■■□□ 2.17
HDDC3-203ENST00000494993 CST9Q5W186 159 aa28.59■■■□□ 2.17
HDDC3-203ENST00000494993 NSFL1CQ9UNZ2 370 aaKnown RBP28.59■■■□□ 2.17
HDDC3-203ENST00000494993 WASHC4Q2M389 1173 aa28.58■■■□□ 2.17
HDDC3-203ENST00000494993 POLR2AP24928 1970 aaKnown RBP28.57■■■□□ 2.16
HDDC3-203ENST00000494993 ZBTB38Q8NAP3 1195 aaPredicted RBP28.57■■■□□ 2.16
HDDC3-203ENST00000494993 PGAP2Q9UHJ9 254 aa28.57■■■□□ 2.16
HDDC3-203ENST00000494993 GPSM2P81274 684 aa28.56■■■□□ 2.16
HDDC3-203ENST00000494993 MAP2K1Q02750 393 aaPredicted RBP28.56■■■□□ 2.16
HDDC3-203ENST00000494993 HIRAP54198 1017 aaPredicted RBP28.55■■■□□ 2.16
HDDC3-203ENST00000494993 PAXIP1Q6ZW49 1069 aaPredicted RBP28.55■■■□□ 2.16
HDDC3-203ENST00000494993 C8orf58Q8NAV2 365 aa28.55■■■□□ 2.16
HDDC3-203ENST00000494993 TRPM4Q8TD43 1214 aa28.55■■■□□ 2.16
HDDC3-203ENST00000494993 ZC3H15Q8WU90 426 aaKnown RBP28.55■■■□□ 2.16
HDDC3-203ENST00000494993 CAPNS2Q96L46 248 aa28.55■■■□□ 2.16
HDDC3-203ENST00000494993 MYD88Q99836 296 aa28.55■■■□□ 2.16
HDDC3-203ENST00000494993 POLLQ9UGP5 575 aa28.55■■■□□ 2.16
HDDC3-203ENST00000494993 CNOT7Q9UIV1 285 aaKnown RBP28.55■■■□□ 2.16
HDDC3-203ENST00000494993 TLL2Q9Y6L7 1015 aa28.55■■■□□ 2.16
HDDC3-203ENST00000494993 SCN9AQ15858 1988 aa28.55■■■□□ 2.16
HDDC3-203ENST00000494993 MYH3P11055 1940 aa28.55■■■□□ 2.16
HDDC3-203ENST00000494993 C6orf229H3BNL8 230 aa28.54■■■□□ 2.16
HDDC3-203ENST00000494993 ECE1P42892 770 aa28.54■■■□□ 2.16
HDDC3-203ENST00000494993 RPS8P62241 208 aaKnown RBP28.54■■■□□ 2.16
HDDC3-203ENST00000494993 GLIS2Q9BZE0 524 aaPredicted RBP28.54■■■□□ 2.16
HDDC3-203ENST00000494993 DBNDD1Q9H9R9 158 aa28.54■■■□□ 2.16
HDDC3-203ENST00000494993 SHTN1A0MZ66 631 aa28.53■■■□□ 2.16
HDDC3-203ENST00000494993 RIMBP2O15034 1052 aa28.53■■■□□ 2.16
HDDC3-203ENST00000494993 HSP90B1P14625 803 aaKnown RBP28.53■■■□□ 2.16
HDDC3-203ENST00000494993 LBX1P52954 281 aa28.53■■■□□ 2.16
HDDC3-203ENST00000494993 CYP4F22Q6NT55 531 aa28.53■■■□□ 2.16
HDDC3-203ENST00000494993 CCDC191Q8NCU4 936 aa28.53■■■□□ 2.16
HDDC3-203ENST00000494993 EYA3Q99504 573 aa28.53■■■□□ 2.16
HDDC3-203ENST00000494993 H7C1D1 291 aa28.52■■■□□ 2.16
HDDC3-203ENST00000494993 PSMD14O00487 310 aa28.52■■■□□ 2.16
HDDC3-203ENST00000494993 MICALL2Q8IY33 904 aa28.52■■■□□ 2.16
HDDC3-203ENST00000494993 ZBTB12Q9Y330 459 aaPredicted RBP28.52■■■□□ 2.16
HDDC3-203ENST00000494993 PSME4Q14997 1843 aa28.51■■■□□ 2.15
HDDC3-203ENST00000494993 CELF2O95319 508 aaKnown RBP28.51■■■□□ 2.15
HDDC3-203ENST00000494993 PCCAP05165 728 aaPredicted RBP28.51■■■□□ 2.15
HDDC3-203ENST00000494993 HSPA8P11142 646 aaKnown RBP28.51■■■□□ 2.15
HDDC3-203ENST00000494993 CCDC30Q5VVM6 783 aa28.51■■■□□ 2.15
HDDC3-203ENST00000494993 DPF2Q92785 391 aa28.51■■■□□ 2.15
HDDC3-203ENST00000494993 CHMP4AQ9BY43 222 aa28.51■■■□□ 2.15
HDDC3-203ENST00000494993 SEC31BQ9NQW1 1179 aa28.51■■■□□ 2.15
HDDC3-203ENST00000494993 GRM1Q13255 1194 aa28.5■■■□□ 2.15
HDDC3-203ENST00000494993 TBC1D16Q8TBP0 767 aa28.5■■■□□ 2.15
HDDC3-203ENST00000494993 METTL22Q9BUU2 404 aaPredicted RBP28.5■■■□□ 2.15
HDDC3-203ENST00000494993 CWC25Q9NXE8 425 aaPredicted RBP28.5■■■□□ 2.15
HDDC3-203ENST00000494993 ECE2O60344 883 aa28.49■■■□□ 2.15
HDDC3-203ENST00000494993 DDX58O95786 925 aaKnown RBP28.49■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms