RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 SMC3Q9UQE7 1217 aa19.76■□□□□ 0.75
CCDC88B-210ENST00000494566 WDR33Q9C0J8 1336 aaKnown RBP19.76■□□□□ 0.75
CCDC88B-210ENST00000494566 PPFIA3O75145 1194 aa19.75■□□□□ 0.75
CCDC88B-210ENST00000494566 MBD3O95983 291 aa19.75■□□□□ 0.75
CCDC88B-210ENST00000494566 RFX5P48382 616 aaPredicted RBP19.75■□□□□ 0.75
CCDC88B-210ENST00000494566 ST3GAL1Q11201 340 aa19.75■□□□□ 0.75
CCDC88B-210ENST00000494566 LMBR1LQ6UX01 489 aa19.75■□□□□ 0.75
CCDC88B-210ENST00000494566 CCDC129Q6ZRS4 1044 aa19.75■□□□□ 0.75
CCDC88B-210ENST00000494566 BRINP3Q76B58 766 aa19.75■□□□□ 0.75
CCDC88B-210ENST00000494566 DBNDD2Q9BQY9 259 aa19.75■□□□□ 0.75
CCDC88B-210ENST00000494566 ZBTB3Q9H5J0 574 aa19.75■□□□□ 0.75
CCDC88B-210ENST00000494566 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.75■□□□□ 0.75
CCDC88B-210ENST00000494566 CYP46A1Q9Y6A2 500 aa19.75■□□□□ 0.75
CCDC88B-210ENST00000494566 GJB2P29033 226 aa19.75■□□□□ 0.75
CCDC88B-210ENST00000494566 SEC62Q99442 399 aaKnown RBP19.75■□□□□ 0.75
CCDC88B-210ENST00000494566 EPB41L2O43491 1005 aaKnown RBP19.75■□□□□ 0.75
CCDC88B-210ENST00000494566 ME3Q16798 604 aa19.75■□□□□ 0.75
CCDC88B-210ENST00000494566 AFDNP55196 1824 aaKnown RBP19.74■□□□□ 0.75
CCDC88B-210ENST00000494566 SLC27A2O14975 620 aa19.74■□□□□ 0.75
CCDC88B-210ENST00000494566 DNM1Q05193 864 aaKnown RBP19.74■□□□□ 0.75
CCDC88B-210ENST00000494566 CAMK4Q16566 473 aa19.74■□□□□ 0.75
CCDC88B-210ENST00000494566 CCDC39Q9UFE4 941 aa19.74■□□□□ 0.75
CCDC88B-210ENST00000494566 STX6O43752 255 aa19.74■□□□□ 0.75
CCDC88B-210ENST00000494566 TNNI3KQ59H18 835 aa19.74■□□□□ 0.75
CCDC88B-210ENST00000494566 FPGT-TNNI3KV9GXZ4 949 aa19.74■□□□□ 0.75
CCDC88B-210ENST00000494566 FOSBP53539 338 aa19.73■□□□□ 0.75
CCDC88B-210ENST00000494566 DDX46Q7L014 1031 aaKnown RBP19.73■□□□□ 0.75
CCDC88B-210ENST00000494566 ZSWIM6Q9HCJ5 1215 aa19.73■□□□□ 0.75
CCDC88B-210ENST00000494566 TPCN1Q9ULQ1 816 aa19.73■□□□□ 0.75
CCDC88B-210ENST00000494566 ZKSCAN1P17029 563 aaPredicted RBP19.73■□□□□ 0.75
CCDC88B-210ENST00000494566 MAP4K1Q92918 833 aa19.73■□□□□ 0.75
CCDC88B-210ENST00000494566 ADCY5O95622 1261 aa19.72■□□□□ 0.75
CCDC88B-210ENST00000494566 ZSCAN22P10073 491 aaPredicted RBP19.72■□□□□ 0.75
CCDC88B-210ENST00000494566 STK3Q13188 491 aa19.72■□□□□ 0.75
CCDC88B-210ENST00000494566 ZCRB1Q8TBF4 217 aaKnown RBP19.72■□□□□ 0.75
CCDC88B-210ENST00000494566 ZNF594Q96JF6 807 aaPredicted RBP19.72■□□□□ 0.75
CCDC88B-210ENST00000494566 VPS53Q5VIR6 699 aa19.71■□□□□ 0.75
CCDC88B-210ENST00000494566 NEUROD6Q96NK8 337 aa19.71■□□□□ 0.75
CCDC88B-210ENST00000494566 CCDC85AQ96PX6 553 aaPredicted RBP19.71■□□□□ 0.75
CCDC88B-210ENST00000494566 PDCL3Q9H2J4 239 aa19.71■□□□□ 0.75
CCDC88B-210ENST00000494566 COPRSQ9NQ92 184 aa19.71■□□□□ 0.75
CCDC88B-210ENST00000494566 TAOK2Q9UL54 1235 aa19.71■□□□□ 0.75
CCDC88B-210ENST00000494566 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.71■□□□□ 0.75
CCDC88B-210ENST00000494566 COL15A1P39059 1388 aa19.71■□□□□ 0.75
CCDC88B-210ENST00000494566 PLBD2Q8NHP8 589 aa19.7■□□□□ 0.74
CCDC88B-210ENST00000494566 ARFGEF2Q9Y6D5 1785 aa19.7■□□□□ 0.74
CCDC88B-210ENST00000494566 ZNF500O60304 480 aaPredicted RBP19.69■□□□□ 0.74
CCDC88B-210ENST00000494566 CASP7P55210 303 aa19.69■□□□□ 0.74
CCDC88B-210ENST00000494566 TIMM10P62072 90 aa19.69■□□□□ 0.74
CCDC88B-210ENST00000494566 F13A1P00488 732 aa19.69■□□□□ 0.74
CCDC88B-210ENST00000494566 SYAP1Q96A49 352 aaPredicted RBP19.69■□□□□ 0.74
CCDC88B-210ENST00000494566 KAT6BQ8WYB5 2073 aa19.69■□□□□ 0.74
CCDC88B-210ENST00000494566 KIAA2012Q0VF49 1180 aa19.68■□□□□ 0.74
CCDC88B-210ENST00000494566 TFIP11Q9UBB9 837 aaKnown RBP19.68■□□□□ 0.74
CCDC88B-210ENST00000494566 FOXO4P98177 505 aa19.68■□□□□ 0.74
CCDC88B-210ENST00000494566 RABL6Q3YEC7 729 aaPredicted RBP19.68■□□□□ 0.74
CCDC88B-210ENST00000494566 WDR17Q8IZU2 1322 aa19.68■□□□□ 0.74
CCDC88B-210ENST00000494566 MRC1P22897 1456 aa19.68■□□□□ 0.74
CCDC88B-210ENST00000494566 MED23Q9ULK4 1368 aa19.67■□□□□ 0.74
CCDC88B-210ENST00000494566 HIP1O00291 1037 aa19.67■□□□□ 0.74
CCDC88B-210ENST00000494566 LRRC24Q50LG9 513 aa19.67■□□□□ 0.74
CCDC88B-210ENST00000494566 LRRC2Q9BYS8 371 aa19.67■□□□□ 0.74
CCDC88B-210ENST00000494566 LMTK3Q96Q04 1460 aa19.67■□□□□ 0.74
CCDC88B-210ENST00000494566 TAF5LO75529 589 aa19.67■□□□□ 0.74
CCDC88B-210ENST00000494566 BLOC1S2Q6QNY1 142 aa19.67■□□□□ 0.74
CCDC88B-210ENST00000494566 CKAP2LQ8IYA6 745 aa19.67■□□□□ 0.74
CCDC88B-210ENST00000494566 KCNB2Q92953 911 aa19.67■□□□□ 0.74
CCDC88B-210ENST00000494566 MTMR6Q9Y217 621 aa19.67■□□□□ 0.74
CCDC88B-210ENST00000494566 AP5Z1O43299 807 aa19.66■□□□□ 0.74
CCDC88B-210ENST00000494566 TM6SF1Q9BZW5 370 aa19.66■□□□□ 0.74
CCDC88B-210ENST00000494566 DCCP43146 1447 aa19.66■□□□□ 0.74
CCDC88B-210ENST00000494566 PKD1L3Q7Z443 1732 aa19.66■□□□□ 0.74
CCDC88B-210ENST00000494566 ATP5JP18859 108 aa19.66■□□□□ 0.74
CCDC88B-210ENST00000494566 GLI3P10071 1580 aa19.66■□□□□ 0.74
CCDC88B-210ENST00000494566 PCDH11XQ9BZA7 1347 aa19.66■□□□□ 0.74
CCDC88B-210ENST00000494566 PCDH11YQ9BZA8 1340 aa19.66■□□□□ 0.74
CCDC88B-210ENST00000494566 PUS3Q9BZE2 481 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-210ENST00000494566 ZNF609O15014 1411 aa19.65■□□□□ 0.74
CCDC88B-210ENST00000494566 GOLIM4O00461 696 aa19.65■□□□□ 0.74
CCDC88B-210ENST00000494566 CPDO75976 1380 aa19.65■□□□□ 0.74
CCDC88B-210ENST00000494566 CWC25Q9NXE8 425 aaPredicted RBP19.65■□□□□ 0.74
CCDC88B-210ENST00000494566 ZNF335Q9H4Z2 1342 aaPredicted RBP19.64■□□□□ 0.74
CCDC88B-210ENST00000494566 A0A0G2JLW4 131 aa19.64■□□□□ 0.73
CCDC88B-210ENST00000494566 CEBPZQ03701 1054 aaKnown RBP19.64■□□□□ 0.73
CCDC88B-210ENST00000494566 TOB2Q14106 344 aaPredicted RBP19.64■□□□□ 0.73
CCDC88B-210ENST00000494566 CDC37L1Q7L3B6 337 aa19.64■□□□□ 0.73
CCDC88B-210ENST00000494566 ATG9AQ7Z3C6 839 aa19.64■□□□□ 0.73
CCDC88B-210ENST00000494566 FBXW7Q969H0 707 aa19.64■□□□□ 0.73
CCDC88B-210ENST00000494566 RPS6KB1P23443 525 aa19.63■□□□□ 0.73
CCDC88B-210ENST00000494566 EVA1CP58658 441 aa19.63■□□□□ 0.73
CCDC88B-210ENST00000494566 CCDC183Q5T5S1 534 aa19.63■□□□□ 0.73
CCDC88B-210ENST00000494566 H7C1W4 665 aa19.63■□□□□ 0.73
CCDC88B-210ENST00000494566 IL2RBP14784 551 aa19.63■□□□□ 0.73
CCDC88B-210ENST00000494566 LARP1BQ659C4 914 aaKnown RBP19.63■□□□□ 0.73
CCDC88B-210ENST00000494566 SLAIN2Q9P270 581 aa19.63■□□□□ 0.73
CCDC88B-210ENST00000494566 PSMA5P28066 241 aa19.62■□□□□ 0.73
CCDC88B-210ENST00000494566 RNF20Q5VTR2 975 aa19.62■□□□□ 0.73
CCDC88B-210ENST00000494566 DDX11Q96FC9 970 aa19.62■□□□□ 0.73
CCDC88B-210ENST00000494566 ZSCAN31Q96LW9 406 aaPredicted RBP19.62■□□□□ 0.73
CCDC88B-210ENST00000494566 SH2B1Q9NRF2 756 aaPredicted RBP19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms