RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 TCIRG1Q13488 830 aa16.51■□□□□ 0.23
SKA1-205ENST00000494518 DPP8Q6V1X1 898 aaPredicted RBP16.51■□□□□ 0.23
SKA1-205ENST00000494518 AIDAQ96BJ3 306 aa16.51■□□□□ 0.23
SKA1-205ENST00000494518 RUNDC1Q96C34 613 aa16.51■□□□□ 0.23
SKA1-205ENST00000494518 SH3TC1Q8TE82 1336 aa16.5■□□□□ 0.23
SKA1-205ENST00000494518 COL4A1P02462 1669 aa16.5■□□□□ 0.23
SKA1-205ENST00000494518 GRM1Q13255 1194 aa16.5■□□□□ 0.23
SKA1-205ENST00000494518 DEFB115Q30KQ5 88 aa16.5■□□□□ 0.23
SKA1-205ENST00000494518 HDGFL1Q5TGJ6 251 aa16.5■□□□□ 0.23
SKA1-205ENST00000494518 PAXIP1Q6ZW49 1069 aaPredicted RBP16.5■□□□□ 0.23
SKA1-205ENST00000494518 DDX46Q7L014 1031 aaKnown RBP16.5■□□□□ 0.23
SKA1-205ENST00000494518 ADAMTS8Q9UP79 889 aa16.5■□□□□ 0.23
SKA1-205ENST00000494518 LRRC37AA6NMS7 1700 aa16.5■□□□□ 0.23
SKA1-205ENST00000494518 RASSF10A6NK89 507 aa16.49■□□□□ 0.23
SKA1-205ENST00000494518 ATP5J2-PTCD1G3V325 749 aa16.49■□□□□ 0.23
SKA1-205ENST00000494518 CXCL9Q07325 125 aa16.49■□□□□ 0.23
SKA1-205ENST00000494518 RTL5Q5HYW3 569 aaPredicted RBP16.49■□□□□ 0.23
SKA1-205ENST00000494518 MPNDQ8N594 471 aa16.49■□□□□ 0.23
SKA1-205ENST00000494518 DUOX1Q9NRD9 1551 aa16.49■□□□□ 0.23
SKA1-205ENST00000494518 RAD17O75943 681 aa16.48■□□□□ 0.23
SKA1-205ENST00000494518 GMPSP49915 693 aaPredicted RBP16.48■□□□□ 0.23
SKA1-205ENST00000494518 GRAPQ13588 217 aa16.48■□□□□ 0.23
SKA1-205ENST00000494518 SP8Q8IXZ3 490 aa16.48■□□□□ 0.23
SKA1-205ENST00000494518 GRAPLQ8TC17 118 aaPredicted RBP16.48■□□□□ 0.23
SKA1-205ENST00000494518 GPRC5DQ9NZD1 345 aa16.48■□□□□ 0.23
SKA1-205ENST00000494518 ZNRF3Q9ULT6 936 aa16.48■□□□□ 0.23
SKA1-205ENST00000494518 POLR2AP24928 1970 aaKnown RBP16.47■□□□□ 0.23
SKA1-205ENST00000494518 WDR33Q9C0J8 1336 aaKnown RBP16.47■□□□□ 0.23
SKA1-205ENST00000494518 BBOX1O75936 387 aa16.47■□□□□ 0.23
SKA1-205ENST00000494518 LBX1P52954 281 aa16.47■□□□□ 0.23
SKA1-205ENST00000494518 USP50Q70EL3 339 aaPredicted RBP16.47■□□□□ 0.23
SKA1-205ENST00000494518 SUPT20HQ8NEM7 779 aa16.47■□□□□ 0.23
SKA1-205ENST00000494518 FAM89AQ96GI7 184 aa16.47■□□□□ 0.23
SKA1-205ENST00000494518 RTFDC1Q9BY42 306 aaPredicted RBP16.47■□□□□ 0.23
SKA1-205ENST00000494518 SHTN1A0MZ66 631 aa16.46■□□□□ 0.23
SKA1-205ENST00000494518 CTCFP49711 727 aaPredicted RBP16.46■□□□□ 0.23
SKA1-205ENST00000494518 CIAPIN1Q6FI81 312 aa16.46■□□□□ 0.23
SKA1-205ENST00000494518 PLBD2Q8NHP8 589 aa16.46■□□□□ 0.23
SKA1-205ENST00000494518 BCL2L13Q9BXK5 485 aa16.46■□□□□ 0.23
SKA1-205ENST00000494518 ADARB2Q9NS39 739 aaKnown RBP16.46■□□□□ 0.23
SKA1-205ENST00000494518 WBP1LQ9NX94 342 aa16.46■□□□□ 0.23
SKA1-205ENST00000494518 KIAA2012Q0VF49 1180 aa16.45■□□□□ 0.22
SKA1-205ENST00000494518 DUSP27Q5VZP5 1158 aa16.45■□□□□ 0.22
SKA1-205ENST00000494518 CYP4F22Q6NT55 531 aa16.45■□□□□ 0.22
SKA1-205ENST00000494518 ANKRD13DQ6ZTN6 518 aa16.45■□□□□ 0.22
SKA1-205ENST00000494518 CELF1Q92879 486 aaKnown RBP16.45■□□□□ 0.22
SKA1-205ENST00000494518 ISCA1Q9BUE6 129 aa16.45■□□□□ 0.22
SKA1-205ENST00000494518 THSD7BQ9C0I4 1608 aa16.45■□□□□ 0.22
SKA1-205ENST00000494518 YDJCA8MPS7 323 aa16.44■□□□□ 0.22
SKA1-205ENST00000494518 CST9Q5W186 159 aa16.44■□□□□ 0.22
SKA1-205ENST00000494518 CAPNS2Q96L46 248 aa16.44■□□□□ 0.22
SKA1-205ENST00000494518 GPR101Q96P66 508 aaPredicted RBP16.44■□□□□ 0.22
SKA1-205ENST00000494518 GLIS2Q9BZE0 524 aaPredicted RBP16.44■□□□□ 0.22
SKA1-205ENST00000494518 VPS33BQ9H267 617 aa16.44■□□□□ 0.22
SKA1-205ENST00000494518 PRDM10Q9NQV6 1147 aa16.44■□□□□ 0.22
SKA1-205ENST00000494518 MBIPQ9NS73 344 aa16.44■□□□□ 0.22
SKA1-205ENST00000494518 DBF4Q9UBU7 674 aaPredicted RBP16.44■□□□□ 0.22
SKA1-205ENST00000494518 ELL2O00472 640 aaPredicted RBP16.43■□□□□ 0.22
SKA1-205ENST00000494518 RIMBP2O15034 1052 aa16.43■□□□□ 0.22
SKA1-205ENST00000494518 HSPA8P11142 646 aaKnown RBP16.43■□□□□ 0.22
SKA1-205ENST00000494518 TRPM4Q8TD43 1214 aa16.43■□□□□ 0.22
SKA1-205ENST00000494518 CFAP44Q96MT7 982 aa16.43■□□□□ 0.22
SKA1-205ENST00000494518 ZNF408Q9H9D4 720 aa16.43■□□□□ 0.22
SKA1-205ENST00000494518 SCN9AQ15858 1988 aa16.42■□□□□ 0.22
SKA1-205ENST00000494518 CELF2O95319 508 aaKnown RBP16.42■□□□□ 0.22
SKA1-205ENST00000494518 HOXB7P09629 217 aa16.42■□□□□ 0.22
SKA1-205ENST00000494518 DBNDD1Q9H9R9 158 aa16.42■□□□□ 0.22
SKA1-205ENST00000494518 HYPKQ9NX55 129 aa16.42■□□□□ 0.22
SKA1-205ENST00000494518 NSFL1CQ9UNZ2 370 aaKnown RBP16.42■□□□□ 0.22
SKA1-205ENST00000494518 ZBTB12Q9Y330 459 aaPredicted RBP16.42■□□□□ 0.22
SKA1-205ENST00000494518 SPEF2Q9C093 1822 aa16.41■□□□□ 0.22
SKA1-205ENST00000494518 C6orf229H3BNL8 230 aa16.41■□□□□ 0.22
SKA1-205ENST00000494518 IRS4O14654 1257 aaPredicted RBP16.41■□□□□ 0.22
SKA1-205ENST00000494518 APAF1O14727 1248 aa16.41■□□□□ 0.22
SKA1-205ENST00000494518 AOC2O75106 756 aa16.41■□□□□ 0.22
SKA1-205ENST00000494518 HIRAP54198 1017 aaPredicted RBP16.41■□□□□ 0.22
SKA1-205ENST00000494518 GPSM2P81274 684 aa16.41■□□□□ 0.22
SKA1-205ENST00000494518 TNIP1Q15025 636 aa16.41■□□□□ 0.22
SKA1-205ENST00000494518 JARID2Q92833 1246 aaPredicted RBP16.41■□□□□ 0.22
SKA1-205ENST00000494518 PHAXQ9H814 394 aaKnown RBP16.41■□□□□ 0.22
SKA1-205ENST00000494518 CNOT7Q9UIV1 285 aaKnown RBP16.41■□□□□ 0.22
SKA1-205ENST00000494518 MAP2K1Q02750 393 aaPredicted RBP16.4■□□□□ 0.22
SKA1-205ENST00000494518 DOK7Q18PE1 504 aa16.4■□□□□ 0.22
SKA1-205ENST00000494518 WASHC4Q2M389 1173 aa16.4■□□□□ 0.22
SKA1-205ENST00000494518 DLK2Q6UY11 383 aa16.4■□□□□ 0.22
SKA1-205ENST00000494518 RIC3Q7Z5B4 369 aa16.4■□□□□ 0.22
SKA1-205ENST00000494518 MICALL2Q8IY33 904 aa16.4■□□□□ 0.22
SKA1-205ENST00000494518 PRKRIP1Q9H875 184 aaPredicted RBP16.4■□□□□ 0.22
SKA1-205ENST00000494518 TSKSQ9UJT2 592 aa16.4■□□□□ 0.22
SKA1-205ENST00000494518 TLL2Q9Y6L7 1015 aa16.4■□□□□ 0.22
SKA1-205ENST00000494518 CASP8AP2Q9UKL3 1982 aa16.4■□□□□ 0.22
SKA1-205ENST00000494518 PSMD14O00487 310 aa16.39■□□□□ 0.21
SKA1-205ENST00000494518 ECE1P42892 770 aa16.39■□□□□ 0.21
SKA1-205ENST00000494518 GOLGA2Q08379 1002 aa16.39■□□□□ 0.21
SKA1-205ENST00000494518 SF3B3Q15393 1217 aaKnown RBP16.39■□□□□ 0.21
SKA1-205ENST00000494518 TMC4Q7Z404 712 aa16.39■□□□□ 0.21
SKA1-205ENST00000494518 CCDC85AQ96PX6 553 aaPredicted RBP16.39■□□□□ 0.21
SKA1-205ENST00000494518 MYD88Q99836 296 aa16.39■□□□□ 0.21
SKA1-205ENST00000494518 KCNQ5Q9NR82 932 aa16.39■□□□□ 0.21
SKA1-205ENST00000494518 POLLQ9UGP5 575 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms