RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 ZC3H4Q9UPT8 1303 aaKnown RBP22.02■■□□□ 1.12
MDC1-206ENST00000489540 UBE3BQ7Z3V4 1068 aa22.02■■□□□ 1.12
MDC1-206ENST00000489540 PSMD1Q99460 953 aa22.02■■□□□ 1.12
MDC1-206ENST00000489540 BCL2L13Q9BXK5 485 aa22.02■■□□□ 1.12
MDC1-206ENST00000489540 ZBED9Q6R2W3 1325 aa22.02■■□□□ 1.11
MDC1-206ENST00000489540 ALDH1L1O75891 902 aa22.01■■□□□ 1.11
MDC1-206ENST00000489540 SLC4A10Q6U841 1118 aa22.01■■□□□ 1.11
MDC1-206ENST00000489540 GPBP1L1Q9HC44 474 aaPredicted RBP22.01■■□□□ 1.11
MDC1-206ENST00000489540 BRPF1P55201 1214 aaPredicted RBP22■■□□□ 1.11
MDC1-206ENST00000489540 SRCIN1Q9C0H9 1055 aa22■■□□□ 1.11
MDC1-206ENST00000489540 RARSP54136 660 aaKnown RBP21.99■■□□□ 1.11
MDC1-206ENST00000489540 CTSWP56202 376 aa21.99■■□□□ 1.11
MDC1-206ENST00000489540 RPS8P62241 208 aaKnown RBP21.99■■□□□ 1.11
MDC1-206ENST00000489540 PLA2G12BQ9BX93 195 aa21.99■■□□□ 1.11
MDC1-206ENST00000489540 CASP7P55210 303 aa21.98■■□□□ 1.11
MDC1-206ENST00000489540 ZNF526Q8TF50 670 aaPredicted RBP21.98■■□□□ 1.11
MDC1-206ENST00000489540 CELF1Q92879 486 aaKnown RBP21.98■■□□□ 1.11
MDC1-206ENST00000489540 ZNF277Q9NRM2 450 aaPredicted RBP21.98■■□□□ 1.11
MDC1-206ENST00000489540 TTLL11Q8NHH1 800 aa21.97■■□□□ 1.11
MDC1-206ENST00000489540 SEC31BQ9NQW1 1179 aa21.97■■□□□ 1.11
MDC1-206ENST00000489540 C9orf78Q9NZ63 289 aaPredicted RBP21.97■■□□□ 1.11
MDC1-206ENST00000489540 GRM8O00222 908 aa21.96■■□□□ 1.11
MDC1-206ENST00000489540 IARSP41252 1262 aaKnown RBP21.96■■□□□ 1.11
MDC1-206ENST00000489540 DPY19L2Q6NUT2 758 aa21.96■■□□□ 1.11
MDC1-206ENST00000489540 MPNDQ8N594 471 aa21.96■■□□□ 1.11
MDC1-206ENST00000489540 SUPT20HQ8NEM7 779 aa21.96■■□□□ 1.11
MDC1-206ENST00000489540 VPS33BQ9H267 617 aa21.96■■□□□ 1.11
MDC1-206ENST00000489540 NOB1Q9ULX3 412 aaKnown RBP21.96■■□□□ 1.11
MDC1-206ENST00000489540 KDM2BQ8NHM5 1336 aa21.95■■□□□ 1.11
MDC1-206ENST00000489540 SNED1Q8TER0 1413 aa21.95■■□□□ 1.1
MDC1-206ENST00000489540 DPP8Q6V1X1 898 aaPredicted RBP21.95■■□□□ 1.1
MDC1-206ENST00000489540 CCDC85AQ96PX6 553 aaPredicted RBP21.95■■□□□ 1.1
MDC1-206ENST00000489540 RTFDC1Q9BY42 306 aaPredicted RBP21.95■■□□□ 1.1
MDC1-206ENST00000489540 GLTPD2A6NH11 291 aa21.94■■□□□ 1.1
MDC1-206ENST00000489540 CSF1RP07333 972 aa21.94■■□□□ 1.1
MDC1-206ENST00000489540 ANKRD18AQ8IVF6 992 aa21.94■■□□□ 1.1
MDC1-206ENST00000489540 CDC5LQ99459 802 aaKnown RBP21.94■■□□□ 1.1
MDC1-206ENST00000489540 API5Q9BZZ5 524 aaKnown RBP21.94■■□□□ 1.1
MDC1-206ENST00000489540 DDX60Q8IY21 1712 aaKnown RBP21.94■■□□□ 1.1
MDC1-206ENST00000489540 FER1L6Q2WGJ9 1857 aa21.93■■□□□ 1.1
MDC1-206ENST00000489540 ARHGAP45Q92619 1136 aa21.93■■□□□ 1.1
MDC1-206ENST00000489540 GREM2Q9H772 168 aa21.93■■□□□ 1.1
MDC1-206ENST00000489540 RTL9Q8NET4 1388 aa21.93■■□□□ 1.1
MDC1-206ENST00000489540 SLC51AQ86UW1 340 aa21.92■■□□□ 1.1
MDC1-206ENST00000489540 JDP2Q8WYK2 163 aa21.92■■□□□ 1.1
MDC1-206ENST00000489540 KIF16BQ96L93 1317 aa21.92■■□□□ 1.1
MDC1-206ENST00000489540 IPO8O15397 1037 aaKnown RBP21.91■■□□□ 1.1
MDC1-206ENST00000489540 NSFL1CQ9UNZ2 370 aaKnown RBP21.91■■□□□ 1.1
MDC1-206ENST00000489540 SBF1O95248 1867 aa21.91■■□□□ 1.1
MDC1-206ENST00000489540 FOXO4P98177 505 aa21.9■■□□□ 1.1
MDC1-206ENST00000489540 CACNA1SQ13698 1873 aa21.9■■□□□ 1.1
MDC1-206ENST00000489540 LARGE2Q8N3Y3 721 aa21.9■■□□□ 1.1
MDC1-206ENST00000489540 LAMB2P55268 1798 aa21.9■■□□□ 1.1
MDC1-206ENST00000489540 UTYO14607 1347 aa21.89■■□□□ 1.1
MDC1-206ENST00000489540 CCT4P50991 539 aaKnown RBP21.89■■□□□ 1.1
MDC1-206ENST00000489540 BSDC1Q9NW68 430 aaPredicted RBP21.89■■□□□ 1.1
MDC1-206ENST00000489540 PPIP5K2O43314 1243 aa21.89■■□□□ 1.09
MDC1-206ENST00000489540 ITGA6P23229 1130 aa21.89■■□□□ 1.09
MDC1-206ENST00000489540 IGHMBP2P38935 993 aaKnown RBP21.89■■□□□ 1.09
MDC1-206ENST00000489540 GPSM2P81274 684 aa21.89■■□□□ 1.09
MDC1-206ENST00000489540 FZD9O00144 591 aa21.88■■□□□ 1.09
MDC1-206ENST00000489540 NBPF7P0C2Y1 421 aaPredicted RBP21.88■■□□□ 1.09
MDC1-206ENST00000489540 NMRK2Q9NPI5 230 aa21.88■■□□□ 1.09
MDC1-206ENST00000489540 PODXL2Q9NZ53 605 aa21.88■■□□□ 1.09
MDC1-206ENST00000489540 ANKRD18BA2A2Z9 1011 aa21.87■■□□□ 1.09
MDC1-206ENST00000489540 KIF3CO14782 793 aa21.87■■□□□ 1.09
MDC1-206ENST00000489540 BCAR3O75815 825 aa21.87■■□□□ 1.09
MDC1-206ENST00000489540 IFIT5Q13325 482 aaKnown RBP21.87■■□□□ 1.09
MDC1-206ENST00000489540 AOC3Q16853 763 aa21.87■■□□□ 1.09
MDC1-206ENST00000489540 FAM161AQ3B820 660 aa21.87■■□□□ 1.09
MDC1-206ENST00000489540 LMBR1LQ6UX01 489 aa21.87■■□□□ 1.09
MDC1-206ENST00000489540 NIM1KQ8IY84 436 aa21.87■■□□□ 1.09
MDC1-206ENST00000489540 RRAGCQ9HB90 399 aa21.87■■□□□ 1.09
MDC1-206ENST00000489540 ANKIB1Q9P2G1 1089 aa21.87■■□□□ 1.09
MDC1-206ENST00000489540 EIF6P56537 245 aaKnown RBP21.86■■□□□ 1.09
MDC1-206ENST00000489540 KIAA2012Q0VF49 1180 aa21.86■■□□□ 1.09
MDC1-206ENST00000489540 USP44Q9H0E7 712 aa21.86■■□□□ 1.09
MDC1-206ENST00000489540 C6orf229H3BNL8 230 aa21.85■■□□□ 1.09
MDC1-206ENST00000489540 VEGFAP15692 232 aaPredicted RBP21.85■■□□□ 1.09
MDC1-206ENST00000489540 WASHC4Q2M389 1173 aa21.85■■□□□ 1.09
MDC1-206ENST00000489540 EPHA10Q5JZY3 1008 aa21.85■■□□□ 1.09
MDC1-206ENST00000489540 SUCLG2Q96I99 432 aa21.85■■□□□ 1.09
MDC1-206ENST00000489540 EYA3Q99504 573 aa21.85■■□□□ 1.09
MDC1-206ENST00000489540 MPHOSPH8Q99549 860 aa21.85■■□□□ 1.09
MDC1-206ENST00000489540 POLLQ9UGP5 575 aa21.85■■□□□ 1.09
MDC1-206ENST00000489540 CHMP3Q9Y3E7 222 aa21.85■■□□□ 1.09
MDC1-206ENST00000489540 DDNO94850 711 aaPredicted RBP21.84■■□□□ 1.09
MDC1-206ENST00000489540 CCDC57Q2TAC2 916 aa21.84■■□□□ 1.09
MDC1-206ENST00000489540 TBC1D16Q8TBP0 767 aa21.84■■□□□ 1.09
MDC1-206ENST00000489540 FRAT1Q92837 279 aaPredicted RBP21.84■■□□□ 1.09
MDC1-206ENST00000489540 GGA1Q9UJY5 639 aa21.84■■□□□ 1.09
MDC1-206ENST00000489540 MINPP1Q9UNW1 487 aa21.84■■□□□ 1.09
MDC1-206ENST00000489540 XDHP47989 1333 aa21.83■■□□□ 1.09
MDC1-206ENST00000489540 ATF7IPQ6VMQ6 1270 aa21.83■■□□□ 1.09
MDC1-206ENST00000489540 KAZALD1Q96I82 304 aa21.83■■□□□ 1.09
MDC1-206ENST00000489540 ZNRF3Q9ULT6 936 aa21.83■■□□□ 1.09
MDC1-206ENST00000489540 ATP2B4P23634 1241 aa21.82■■□□□ 1.08
MDC1-206ENST00000489540 C16orf71Q8IYS4 520 aaPredicted RBP21.82■■□□□ 1.08
MDC1-206ENST00000489540 HDAC5Q9UQL6 1122 aa21.82■■□□□ 1.08
MDC1-206ENST00000489540 ZNF541Q9H0D2 1346 aa21.82■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms