RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 ADAMTS8Q9UP79 889 aa16.18■□□□□ 0.18
CPSF3-204ENST00000489403 HOXB7P09629 217 aa16.17■□□□□ 0.18
CPSF3-204ENST00000489403 CXCL9Q07325 125 aa16.17■□□□□ 0.18
CPSF3-204ENST00000489403 MPNDQ8N594 471 aa16.17■□□□□ 0.18
CPSF3-204ENST00000489403 PLBD2Q8NHP8 589 aa16.17■□□□□ 0.18
CPSF3-204ENST00000489403 GPRC5DQ9NZD1 345 aa16.17■□□□□ 0.18
CPSF3-204ENST00000489403 ZNRF3Q9ULT6 936 aa16.17■□□□□ 0.18
CPSF3-204ENST00000489403 ABT1Q9ULW3 272 aaKnown RBP16.17■□□□□ 0.18
CPSF3-204ENST00000489403 THSD7BQ9C0I4 1608 aa16.16■□□□□ 0.18
CPSF3-204ENST00000489403 KIAA2012Q0VF49 1180 aa16.16■□□□□ 0.18
CPSF3-204ENST00000489403 AIDAQ96BJ3 306 aa16.16■□□□□ 0.18
CPSF3-204ENST00000489403 ISCA1Q9BUE6 129 aa16.16■□□□□ 0.18
CPSF3-204ENST00000489403 ADARB2Q9NS39 739 aaKnown RBP16.16■□□□□ 0.18
CPSF3-204ENST00000489403 WBP1LQ9NX94 342 aa16.16■□□□□ 0.18
CPSF3-204ENST00000489403 DBF4Q9UBU7 674 aaPredicted RBP16.16■□□□□ 0.18
CPSF3-204ENST00000489403 WDR33Q9C0J8 1336 aaKnown RBP16.16■□□□□ 0.18
CPSF3-204ENST00000489403 COL4A1P02462 1669 aa16.15■□□□□ 0.18
CPSF3-204ENST00000489403 TRAF5O00463 557 aa16.15■□□□□ 0.18
CPSF3-204ENST00000489403 ANKRD13DQ6ZTN6 518 aa16.15■□□□□ 0.18
CPSF3-204ENST00000489403 CFAP44Q96MT7 982 aa16.15■□□□□ 0.18
CPSF3-204ENST00000489403 PRDM10Q9NQV6 1147 aa16.15■□□□□ 0.18
CPSF3-204ENST00000489403 CTCFP49711 727 aaPredicted RBP16.14■□□□□ 0.17
CPSF3-204ENST00000489403 GMPSP49915 693 aaPredicted RBP16.14■□□□□ 0.17
CPSF3-204ENST00000489403 CIAPIN1Q6FI81 312 aa16.14■□□□□ 0.17
CPSF3-204ENST00000489403 FAM89AQ96GI7 184 aa16.14■□□□□ 0.17
CPSF3-204ENST00000489403 MBIPQ9NS73 344 aa16.14■□□□□ 0.17
CPSF3-204ENST00000489403 YDJCA8MPS7 323 aa16.13■□□□□ 0.17
CPSF3-204ENST00000489403 ATP5J2-PTCD1G3V325 749 aa16.13■□□□□ 0.17
CPSF3-204ENST00000489403 RAD17O75943 681 aa16.13■□□□□ 0.17
CPSF3-204ENST00000489403 DUSP27Q5VZP5 1158 aa16.13■□□□□ 0.17
CPSF3-204ENST00000489403 CST9Q5W186 159 aa16.13■□□□□ 0.17
CPSF3-204ENST00000489403 TMC4Q7Z404 712 aa16.13■□□□□ 0.17
CPSF3-204ENST00000489403 CDHR2Q9BYE9 1310 aa16.13■□□□□ 0.17
CPSF3-204ENST00000489403 ZNF853P0CG23 659 aa16.12■□□□□ 0.17
CPSF3-204ENST00000489403 SF3B3Q15393 1217 aaKnown RBP16.12■□□□□ 0.17
CPSF3-204ENST00000489403 CELF1Q92879 486 aaKnown RBP16.12■□□□□ 0.17
CPSF3-204ENST00000489403 PRKRIP1Q9H875 184 aaPredicted RBP16.12■□□□□ 0.17
CPSF3-204ENST00000489403 HYPKQ9NX55 129 aa16.12■□□□□ 0.17
CPSF3-204ENST00000489403 LBX1P52954 281 aa16.11■□□□□ 0.17
CPSF3-204ENST00000489403 MAP2K1Q02750 393 aaPredicted RBP16.11■□□□□ 0.17
CPSF3-204ENST00000489403 TNIP1Q15025 636 aa16.11■□□□□ 0.17
CPSF3-204ENST00000489403 RTL5Q5HYW3 569 aaPredicted RBP16.11■□□□□ 0.17
CPSF3-204ENST00000489403 CYP4F22Q6NT55 531 aa16.11■□□□□ 0.17
CPSF3-204ENST00000489403 TLL2Q9Y6L7 1015 aa16.11■□□□□ 0.17
CPSF3-204ENST00000489403 HSPA8P11142 646 aaKnown RBP16.1■□□□□ 0.17
CPSF3-204ENST00000489403 HIRAP54198 1017 aaPredicted RBP16.1■□□□□ 0.17
CPSF3-204ENST00000489403 PAXIP1Q6ZW49 1069 aaPredicted RBP16.1■□□□□ 0.17
CPSF3-204ENST00000489403 TRPM4Q8TD43 1214 aa16.1■□□□□ 0.17
CPSF3-204ENST00000489403 CAPNS2Q96L46 248 aa16.1■□□□□ 0.17
CPSF3-204ENST00000489403 BCL2L13Q9BXK5 485 aa16.1■□□□□ 0.17
CPSF3-204ENST00000489403 PGAP2Q9UHJ9 254 aa16.1■□□□□ 0.17
CPSF3-204ENST00000489403 SHTN1A0MZ66 631 aa16.09■□□□□ 0.17
CPSF3-204ENST00000489403 IRS4O14654 1257 aaPredicted RBP16.09■□□□□ 0.17
CPSF3-204ENST00000489403 ECE1P42892 770 aa16.09■□□□□ 0.17
CPSF3-204ENST00000489403 TRIM28Q13263 835 aaKnown RBP16.09■□□□□ 0.17
CPSF3-204ENST00000489403 GLIS2Q9BZE0 524 aaPredicted RBP16.09■□□□□ 0.17
CPSF3-204ENST00000489403 PHAXQ9H814 394 aaKnown RBP16.09■□□□□ 0.17
CPSF3-204ENST00000489403 IFT57Q9NWB7 429 aa16.09■□□□□ 0.17
CPSF3-204ENST00000489403 NSFL1CQ9UNZ2 370 aaKnown RBP16.09■□□□□ 0.17
CPSF3-204ENST00000489403 APAF1O14727 1248 aa16.08■□□□□ 0.16
CPSF3-204ENST00000489403 CELF2O95319 508 aaKnown RBP16.08■□□□□ 0.16
CPSF3-204ENST00000489403 GPSM2P81274 684 aa16.08■□□□□ 0.16
CPSF3-204ENST00000489403 GOLGA2Q08379 1002 aa16.08■□□□□ 0.16
CPSF3-204ENST00000489403 GRM1Q13255 1194 aa16.08■□□□□ 0.16
CPSF3-204ENST00000489403 WASHC4Q2M389 1173 aa16.08■□□□□ 0.16
CPSF3-204ENST00000489403 DBNDD1Q9H9R9 158 aa16.08■□□□□ 0.16
CPSF3-204ENST00000489403 POLLQ9UGP5 575 aa16.08■□□□□ 0.16
CPSF3-204ENST00000489403 CNOT7Q9UIV1 285 aaKnown RBP16.08■□□□□ 0.16
CPSF3-204ENST00000489403 ZBTB12Q9Y330 459 aaPredicted RBP16.08■□□□□ 0.16
CPSF3-204ENST00000489403 ELL2O00472 640 aaPredicted RBP16.07■□□□□ 0.16
CPSF3-204ENST00000489403 PSMD14O00487 310 aa16.07■□□□□ 0.16
CPSF3-204ENST00000489403 RIC3Q7Z5B4 369 aa16.07■□□□□ 0.16
CPSF3-204ENST00000489403 SAPCD2Q86UD0 394 aa16.07■□□□□ 0.16
CPSF3-204ENST00000489403 MICALL2Q8IY33 904 aa16.07■□□□□ 0.16
CPSF3-204ENST00000489403 ZBTB38Q8NAP3 1195 aaPredicted RBP16.07■□□□□ 0.16
CPSF3-204ENST00000489403 ZC3H15Q8WU90 426 aaKnown RBP16.07■□□□□ 0.16
CPSF3-204ENST00000489403 GPR101Q96P66 508 aaPredicted RBP16.07■□□□□ 0.16
CPSF3-204ENST00000489403 C6orf229H3BNL8 230 aa16.06■□□□□ 0.16
CPSF3-204ENST00000489403 RIMBP2O15034 1052 aa16.06■□□□□ 0.16
CPSF3-204ENST00000489403 GNAI1P63096 354 aa16.06■□□□□ 0.16
CPSF3-204ENST00000489403 PIAS4Q8N2W9 510 aaPredicted RBP16.06■□□□□ 0.16
CPSF3-204ENST00000489403 MYD88Q99836 296 aa16.06■□□□□ 0.16
CPSF3-204ENST00000489403 H7C1D1 291 aa16.05■□□□□ 0.16
CPSF3-204ENST00000489403 ECE2O60344 883 aa16.05■□□□□ 0.16
CPSF3-204ENST00000489403 AOC2O75106 756 aa16.05■□□□□ 0.16
CPSF3-204ENST00000489403 RPS8P62241 208 aaKnown RBP16.05■□□□□ 0.16
CPSF3-204ENST00000489403 CALD1Q05682 793 aaKnown RBP16.05■□□□□ 0.16
CPSF3-204ENST00000489403 CDC37L1Q7L3B6 337 aa16.05■□□□□ 0.16
CPSF3-204ENST00000489403 DPF2Q92785 391 aa16.05■□□□□ 0.16
CPSF3-204ENST00000489403 EYA3Q99504 573 aa16.05■□□□□ 0.16
CPSF3-204ENST00000489403 ZNF408Q9H9D4 720 aa16.05■□□□□ 0.16
CPSF3-204ENST00000489403 SEC31BQ9NQW1 1179 aa16.05■□□□□ 0.16
CPSF3-204ENST00000489403 SCN9AQ15858 1988 aa16.04■□□□□ 0.16
CPSF3-204ENST00000489403 RTL9Q8NET4 1388 aa16.04■□□□□ 0.16
CPSF3-204ENST00000489403 DOK7Q18PE1 504 aa16.04■□□□□ 0.16
CPSF3-204ENST00000489403 C8orf58Q8NAV2 365 aa16.04■□□□□ 0.16
CPSF3-204ENST00000489403 TBC1D16Q8TBP0 767 aa16.04■□□□□ 0.16
CPSF3-204ENST00000489403 KCNQ5Q9NR82 932 aa16.04■□□□□ 0.16
CPSF3-204ENST00000489403 EGFRP00533 1210 aa16.03■□□□□ 0.16
CPSF3-204ENST00000489403 PCCAP05165 728 aaPredicted RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms