RNA–Protein interactions for RNA: ENST00000489261.1

ITSN1-231, Transcript of intersectin 1, human

TSL 1 (best)

Gene ITSN1, Length 1,108 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ITSN1-231	ENST00000489261	ZBTB3	Q9H5J0	574 aa		13.15	□□□□□ -0.3
ITSN1-231	ENST00000489261	CDHR2	Q9BYE9	1310 aa		13.14	□□□□□ -0.31
ITSN1-231	ENST00000489261	ATP5J	P18859	108 aa		13.14	□□□□□ -0.31
ITSN1-231	ENST00000489261	ZNF827	Q17R98	1081 aa		13.14	□□□□□ -0.31
ITSN1-231	ENST00000489261	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	13.14	□□□□□ -0.31
ITSN1-231	ENST00000489261	AKT1S1	Q96B36	256 aa		13.14	□□□□□ -0.31
ITSN1-231	ENST00000489261	SLK	Q9H2G2	1235 aa	Predicted RBP	13.14	□□□□□ -0.31
ITSN1-231	ENST00000489261	SPON1	Q9HCB6	807 aa		13.14	□□□□□ -0.31
ITSN1-231	ENST00000489261	CWC22	Q9HCG8	908 aa	Known RBP	13.14	□□□□□ -0.31
ITSN1-231	ENST00000489261	DIAPH3	Q9NSV4	1193 aa		13.14	□□□□□ -0.31
ITSN1-231	ENST00000489261	UBR3	Q6ZT12	1888 aa		13.14	□□□□□ -0.31
ITSN1-231	ENST00000489261	C4B	P0C0L5	1744 aa		13.13	□□□□□ -0.31
ITSN1-231	ENST00000489261	AFDN	P55196	1824 aa	Known RBP	13.13	□□□□□ -0.31
ITSN1-231	ENST00000489261	HSP90AA1	P07900	732 aa	Known RBP	13.13	□□□□□ -0.31
ITSN1-231	ENST00000489261	TNNI3K	Q59H18	835 aa		13.13	□□□□□ -0.31
ITSN1-231	ENST00000489261	AK7	Q96M32	723 aa		13.13	□□□□□ -0.31
ITSN1-231	ENST00000489261	ANO2	Q9NQ90	1003 aa		13.13	□□□□□ -0.31
ITSN1-231	ENST00000489261	FPGT-TNNI3K	V9GXZ4	949 aa		13.13	□□□□□ -0.31
ITSN1-231	ENST00000489261	RAD50	Q92878	1312 aa		13.13	□□□□□ -0.31
ITSN1-231	ENST00000489261	PALLD	Q8WX93	1383 aa		13.12	□□□□□ -0.31
ITSN1-231	ENST00000489261	CSF1R	P07333	972 aa		13.12	□□□□□ -0.31
ITSN1-231	ENST00000489261	HSP90B1	P14625	803 aa	Known RBP	13.12	□□□□□ -0.31
ITSN1-231	ENST00000489261	HSPA4	P34932	840 aa		13.12	□□□□□ -0.31
ITSN1-231	ENST00000489261	DDIT3	P35638	169 aa		13.12	□□□□□ -0.31
ITSN1-231	ENST00000489261	CCDC57	Q2TAC2	916 aa		13.12	□□□□□ -0.31
ITSN1-231	ENST00000489261	CCDC8	Q9H0W5	538 aa	Predicted RBP	13.12	□□□□□ -0.31
ITSN1-231	ENST00000489261	SIL1	Q9H173	461 aa		13.12	□□□□□ -0.31
ITSN1-231	ENST00000489261	SNRK	Q9NRH2	765 aa		13.12	□□□□□ -0.31
ITSN1-231	ENST00000489261	COL5A3	P25940	1745 aa	Predicted RBP	13.11	□□□□□ -0.31
ITSN1-231	ENST00000489261	RFX7	Q2KHR2	1363 aa		13.11	□□□□□ -0.31
ITSN1-231	ENST00000489261	EYA2	O00167	538 aa		13.11	□□□□□ -0.31
ITSN1-231	ENST00000489261	RGL2	O15211	777 aa		13.11	□□□□□ -0.31
ITSN1-231	ENST00000489261	PTMS	P20962	102 aa		13.11	□□□□□ -0.31
ITSN1-231	ENST00000489261	TFCP2	Q12800	502 aa		13.11	□□□□□ -0.31
ITSN1-231	ENST00000489261	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	13.11	□□□□□ -0.31
ITSN1-231	ENST00000489261	JARID2	Q92833	1246 aa	Predicted RBP	13.11	□□□□□ -0.31
ITSN1-231	ENST00000489261	SLC4A9	Q96Q91	983 aa		13.11	□□□□□ -0.31
ITSN1-231	ENST00000489261	CCNL1	Q9UK58	526 aa	Predicted RBP	13.11	□□□□□ -0.31
ITSN1-231	ENST00000489261	AKAP2	Q9Y2D5	859 aa		13.11	□□□□□ -0.31
ITSN1-231	ENST00000489261	CIC	Q96RK0	1608 aa	Predicted RBP	13.1	□□□□□ -0.31
ITSN1-231	ENST00000489261	EIF5	P55010	431 aa	Known RBP	13.1	□□□□□ -0.31
ITSN1-231	ENST00000489261	KCNQ4	P56696	695 aa		13.1	□□□□□ -0.31
ITSN1-231	ENST00000489261	NLRP10	Q86W26	655 aa		13.1	□□□□□ -0.31
ITSN1-231	ENST00000489261	CCDC87	Q9NVE4	849 aa		13.1	□□□□□ -0.31
ITSN1-231	ENST00000489261	CHMP3	Q9Y3E7	222 aa		13.1	□□□□□ -0.31
ITSN1-231	ENST00000489261	LOC102724428	A0A0B4J2F2	783 aa		13.09	□□□□□ -0.31
ITSN1-231	ENST00000489261	MAP4K4	O95819	1239 aa	Predicted RBP	13.09	□□□□□ -0.31
ITSN1-231	ENST00000489261	ATP6V1A	P38606	617 aa		13.09	□□□□□ -0.31
ITSN1-231	ENST00000489261	PTGER2	P43116	358 aa		13.09	□□□□□ -0.31
ITSN1-231	ENST00000489261	SIK1	P57059	783 aa		13.09	□□□□□ -0.31
ITSN1-231	ENST00000489261	ATG9A	Q7Z3C6	839 aa		13.09	□□□□□ -0.31
ITSN1-231	ENST00000489261	DZIP3	Q86Y13	1208 aa	Known RBP	13.09	□□□□□ -0.31
ITSN1-231	ENST00000489261	KLHDC4	Q8TBB5	520 aa		13.09	□□□□□ -0.31
ITSN1-231	ENST00000489261	KCNB2	Q92953	911 aa		13.09	□□□□□ -0.31
ITSN1-231	ENST00000489261	SGIP1	Q9BQI5	828 aa		13.09	□□□□□ -0.31
ITSN1-231	ENST00000489261	MTFR1L	Q9H019	292 aa		13.09	□□□□□ -0.31
ITSN1-231	ENST00000489261	LSG1	Q9H089	658 aa	Known RBP	13.09	□□□□□ -0.31
ITSN1-231	ENST00000489261	CEP126	Q9P2H0	1117 aa		13.09	□□□□□ -0.31
ITSN1-231	ENST00000489261	ZBTB1	Q9Y2K1	713 aa		13.09	□□□□□ -0.31
ITSN1-231	ENST00000489261	ZNF330	Q9Y3S2	320 aa	Predicted RBP	13.09	□□□□□ -0.31
ITSN1-231	ENST00000489261	PNPLA7	Q6ZV29	1317 aa		13.09	□□□□□ -0.31
ITSN1-231	ENST00000489261	ZBTB7A	O95365	584 aa		13.08	□□□□□ -0.32
ITSN1-231	ENST00000489261	NEK4	P51957	841 aa		13.08	□□□□□ -0.32
ITSN1-231	ENST00000489261	NUCB2	P80303	420 aa		13.08	□□□□□ -0.32
ITSN1-231	ENST00000489261	IFIT5	Q13325	482 aa	Known RBP	13.08	□□□□□ -0.32
ITSN1-231	ENST00000489261	PARP10	Q53GL7	1025 aa		13.08	□□□□□ -0.32
ITSN1-231	ENST00000489261	CWC27	Q6UX04	472 aa	Known RBP	13.08	□□□□□ -0.32
ITSN1-231	ENST00000489261	ZNF34	Q8IZ26	560 aa		13.08	□□□□□ -0.32
ITSN1-231	ENST00000489261	ARX	Q96QS3	562 aa		13.08	□□□□□ -0.32
ITSN1-231	ENST00000489261	HAUS7	Q99871	368 aa		13.08	□□□□□ -0.32
ITSN1-231	ENST00000489261	BOLA2	Q9H3K6	86 aa		13.08	□□□□□ -0.32
ITSN1-231	ENST00000489261	PDE8A	O60658	829 aa		13.07	□□□□□ -0.32
ITSN1-231	ENST00000489261	FRAT2	O75474	233 aa	Predicted RBP	13.07	□□□□□ -0.32
ITSN1-231	ENST00000489261	CD2BP2	O95400	341 aa	Known RBP	13.07	□□□□□ -0.32
ITSN1-231	ENST00000489261	HLF	Q16534	295 aa		13.07	□□□□□ -0.32
ITSN1-231	ENST00000489261	LRRFIP1	Q32MZ4	808 aa	Known RBP	13.07	□□□□□ -0.32
ITSN1-231	ENST00000489261	INTS5	Q6P9B9	1019 aa	Known RBP	13.07	□□□□□ -0.32
ITSN1-231	ENST00000489261	SPRYD3	Q8NCJ5	442 aa		13.07	□□□□□ -0.32
ITSN1-231	ENST00000489261	FSD1	Q9BTV5	496 aa		13.07	□□□□□ -0.32
ITSN1-231	ENST00000489261	TM6SF1	Q9BZW5	370 aa		13.07	□□□□□ -0.32
ITSN1-231	ENST00000489261	DBNL	Q9UJU6	430 aa	Known RBP	13.07	□□□□□ -0.32
ITSN1-231	ENST00000489261	ANKRD18B	A2A2Z9	1011 aa		13.06	□□□□□ -0.32
ITSN1-231	ENST00000489261	HMGB2	P26583	209 aa	Known RBP	13.06	□□□□□ -0.32
ITSN1-231	ENST00000489261	RAB3GAP1	Q15042	981 aa		13.06	□□□□□ -0.32
ITSN1-231	ENST00000489261	TAF7L	Q5H9L4	462 aa		13.06	□□□□□ -0.32
ITSN1-231	ENST00000489261	SLC16A10	Q8TF71	515 aa		13.06	□□□□□ -0.32
ITSN1-231	ENST00000489261	INTS4	Q96HW7	963 aa	Known RBP	13.06	□□□□□ -0.32
ITSN1-231	ENST00000489261	GBP4	Q96PP9	640 aa		13.06	□□□□□ -0.32
ITSN1-231	ENST00000489261	AK9	Q5TCS8	1911 aa		13.05	□□□□□ -0.32
ITSN1-231	ENST00000489261	TJP1	Q07157	1748 aa		13.05	□□□□□ -0.32
ITSN1-231	ENST00000489261	DDX11L8	A8MPP1	907 aa		13.05	□□□□□ -0.32
ITSN1-231	ENST00000489261	ZKSCAN1	P17029	563 aa	Predicted RBP	13.05	□□□□□ -0.32
ITSN1-231	ENST00000489261	MCM4	P33991	863 aa		13.05	□□□□□ -0.32
ITSN1-231	ENST00000489261	CRKL	P46109	303 aa	Known RBP	13.05	□□□□□ -0.32
ITSN1-231	ENST00000489261	RNF20	Q5VTR2	975 aa		13.05	□□□□□ -0.32
ITSN1-231	ENST00000489261	CLEC4G	Q6UXB4	293 aa		13.05	□□□□□ -0.32
ITSN1-231	ENST00000489261	CLEC17A	Q6ZS10	378 aa		13.05	□□□□□ -0.32
ITSN1-231	ENST00000489261	MAP4K1	Q92918	833 aa		13.05	□□□□□ -0.32
ITSN1-231	ENST00000489261	FAM89A	Q96GI7	184 aa		13.05	□□□□□ -0.32
ITSN1-231	ENST00000489261	DBNDD2	Q9BQY9	259 aa		13.05	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms