RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 CCDC27Q2M243 656 aa29.18■■■□□ 2.26
PTPN4-211ENST00000488279 CREBZFQ9NS37 354 aa29.18■■■□□ 2.26
PTPN4-211ENST00000488279 ANP32CO43423 234 aa29.17■■■□□ 2.26
PTPN4-211ENST00000488279 LMOD1P29536 600 aaPredicted RBP29.17■■■□□ 2.26
PTPN4-211ENST00000488279 RTL5Q5HYW3 569 aaPredicted RBP29.17■■■□□ 2.26
PTPN4-211ENST00000488279 COL4A5P29400 1685 aa29.17■■■□□ 2.26
PTPN4-211ENST00000488279 IRS4O14654 1257 aaPredicted RBP29.16■■■□□ 2.26
PTPN4-211ENST00000488279 IFFO2Q5TF58 517 aa29.16■■■□□ 2.26
PTPN4-211ENST00000488279 MRS2Q9HD23 443 aa29.16■■■□□ 2.26
PTPN4-211ENST00000488279 WWC1Q8IX03 1113 aa29.15■■■□□ 2.26
PTPN4-211ENST00000488279 ZNRF3Q9ULT6 936 aa29.15■■■□□ 2.26
PTPN4-211ENST00000488279 PASKQ96RG2 1323 aa29.15■■■□□ 2.26
PTPN4-211ENST00000488279 DDX58O95786 925 aaKnown RBP29.14■■■□□ 2.26
PTPN4-211ENST00000488279 ITGBL1O95965 494 aaPredicted RBP29.14■■■□□ 2.26
PTPN4-211ENST00000488279 HSP90B1P14625 803 aaKnown RBP29.14■■■□□ 2.26
PTPN4-211ENST00000488279 TSPYL6Q8N831 410 aa29.14■■■□□ 2.26
PTPN4-211ENST00000488279 ZBTB38Q8NAP3 1195 aaPredicted RBP29.14■■■□□ 2.26
PTPN4-211ENST00000488279 MYD88Q99836 296 aa29.14■■■□□ 2.26
PTPN4-211ENST00000488279 TSR2Q969E8 191 aaKnown RBP29.13■■■□□ 2.25
PTPN4-211ENST00000488279 SCNN1DP51172 638 aa29.12■■■□□ 2.25
PTPN4-211ENST00000488279 KIAA2012Q0VF49 1180 aa29.12■■■□□ 2.25
PTPN4-211ENST00000488279 CNTROBQ8N137 903 aa29.12■■■□□ 2.25
PTPN4-211ENST00000488279 CCDC191Q8NCU4 936 aa29.12■■■□□ 2.25
PTPN4-211ENST00000488279 CXCL9Q07325 125 aa29.11■■■□□ 2.25
PTPN4-211ENST00000488279 NCBP3Q53F19 620 aaKnown RBP29.11■■■□□ 2.25
PTPN4-211ENST00000488279 MAP1SQ66K74 1059 aaPredicted RBP29.11■■■□□ 2.25
PTPN4-211ENST00000488279 CELF1Q92879 486 aaKnown RBP29.11■■■□□ 2.25
PTPN4-211ENST00000488279 EPS15P42566 896 aa29.1■■■□□ 2.25
PTPN4-211ENST00000488279 METTL22Q9BUU2 404 aaPredicted RBP29.1■■■□□ 2.25
PTPN4-211ENST00000488279 LAMB2P55268 1798 aa29.1■■■□□ 2.25
PTPN4-211ENST00000488279 STK31Q9BXU1 1019 aa29.09■■■□□ 2.25
PTPN4-211ENST00000488279 CWC25Q9NXE8 425 aaPredicted RBP29.09■■■□□ 2.25
PTPN4-211ENST00000488279 NSFL1CQ9UNZ2 370 aaKnown RBP29.09■■■□□ 2.25
PTPN4-211ENST00000488279 TMEM88BA6NKF7 163 aa29.08■■■□□ 2.25
PTPN4-211ENST00000488279 USP50Q70EL3 339 aaPredicted RBP29.08■■■□□ 2.25
PTPN4-211ENST00000488279 MKRN1Q9UHC7 482 aaKnown RBP29.08■■■□□ 2.25
PTPN4-211ENST00000488279 PCCAP05165 728 aaPredicted RBP29.07■■■□□ 2.24
PTPN4-211ENST00000488279 RPS8P62241 208 aaKnown RBP29.07■■■□□ 2.24
PTPN4-211ENST00000488279 IL16Q14005 1332 aa29.07■■■□□ 2.24
PTPN4-211ENST00000488279 MAP3K2Q9Y2U5 619 aa29.07■■■□□ 2.24
PTPN4-211ENST00000488279 TNIP1Q15025 636 aa29.06■■■□□ 2.24
PTPN4-211ENST00000488279 TWISTNBQ3B726 338 aaPredicted RBP29.06■■■□□ 2.24
PTPN4-211ENST00000488279 CIAPIN1Q6FI81 312 aa29.06■■■□□ 2.24
PTPN4-211ENST00000488279 GPRC5DQ9NZD1 345 aa29.06■■■□□ 2.24
PTPN4-211ENST00000488279 WASHC4Q2M389 1173 aa29.05■■■□□ 2.24
PTPN4-211ENST00000488279 KSR2Q6VAB6 950 aa29.05■■■□□ 2.24
PTPN4-211ENST00000488279 DDX60Q8IY21 1712 aaKnown RBP29.05■■■□□ 2.24
PTPN4-211ENST00000488279 PI4KAP2A4QPH2 592 aa29.04■■■□□ 2.24
PTPN4-211ENST00000488279 RAD17O75943 681 aa29.04■■■□□ 2.24
PTPN4-211ENST00000488279 PI4KAP1Q8N8J0 262 aa29.04■■■□□ 2.24
PTPN4-211ENST00000488279 ADARB2Q9NS39 739 aaKnown RBP29.04■■■□□ 2.24
PTPN4-211ENST00000488279 C6orf229H3BNL8 230 aa29.03■■■□□ 2.24
PTPN4-211ENST00000488279 PDE8AO60658 829 aa29.03■■■□□ 2.24
PTPN4-211ENST00000488279 GMPSP49915 693 aaPredicted RBP29.03■■■□□ 2.24
PTPN4-211ENST00000488279 CCDC152Q4G0S7 254 aa29.03■■■□□ 2.24
PTPN4-211ENST00000488279 JARID2Q92833 1246 aaPredicted RBP29.03■■■□□ 2.24
PTPN4-211ENST00000488279 GPSM2P81274 684 aa29.02■■■□□ 2.24
PTPN4-211ENST00000488279 BCL2L13Q9BXK5 485 aa29.02■■■□□ 2.24
PTPN4-211ENST00000488279 ADAMTSL1Q8N6G6 1762 aa29.02■■■□□ 2.24
PTPN4-211ENST00000488279 SLC4A2P04920 1241 aa29.01■■■□□ 2.23
PTPN4-211ENST00000488279 NEXNQ0ZGT2 675 aa29.01■■■□□ 2.23
PTPN4-211ENST00000488279 SEC31BQ9NQW1 1179 aa29.01■■■□□ 2.23
PTPN4-211ENST00000488279 POLLQ9UGP5 575 aa29.01■■■□□ 2.23
PTPN4-211ENST00000488279 SALL2Q9Y467 1007 aaPredicted RBP29.01■■■□□ 2.23
PTPN4-211ENST00000488279 TAF1P21675 1872 aa29.01■■■□□ 2.23
PTPN4-211ENST00000488279 CNTNAP1P78357 1384 aa29.01■■■□□ 2.23
PTPN4-211ENST00000488279 HSPA1AP0DMV8 641 aaKnown RBP29■■■□□ 2.23
PTPN4-211ENST00000488279 HSPA1BP0DMV9 641 aaKnown RBP29■■■□□ 2.23
PTPN4-211ENST00000488279 WDR63Q8IWG1 891 aa29■■■□□ 2.23
PTPN4-211ENST00000488279 EYA3Q99504 573 aa29■■■□□ 2.23
PTPN4-211ENST00000488279 LTBP1Q14766 1721 aa29■■■□□ 2.23
PTPN4-211ENST00000488279 YDJCA8MPS7 323 aa28.99■■■□□ 2.23
PTPN4-211ENST00000488279 RIMBP2O15034 1052 aa28.99■■■□□ 2.23
PTPN4-211ENST00000488279 IGKV5-2P06315 115 aa28.99■■■□□ 2.23
PTPN4-211ENST00000488279 CDHR2Q9BYE9 1310 aa28.98■■■□□ 2.23
PTPN4-211ENST00000488279 TBC1D16Q8TBP0 767 aa28.98■■■□□ 2.23
PTPN4-211ENST00000488279 CCDC85AQ96PX6 553 aaPredicted RBP28.98■■■□□ 2.23
PTPN4-211ENST00000488279 G2E3Q7L622 706 aa28.97■■■□□ 2.23
PTPN4-211ENST00000488279 ANKIB1Q9P2G1 1089 aa28.97■■■□□ 2.23
PTPN4-211ENST00000488279 FANCIQ9NVI1 1328 aa28.96■■■□□ 2.23
PTPN4-211ENST00000488279 COL13A1Q5TAT6 717 aaPredicted RBP28.96■■■□□ 2.23
PTPN4-211ENST00000488279 ZC3H12CQ9C0D7 883 aaKnown RBP28.96■■■□□ 2.23
PTPN4-211ENST00000488279 DBNDD1Q9H9R9 158 aa28.96■■■□□ 2.23
PTPN4-211ENST00000488279 PODXL2Q9NZ53 605 aa28.96■■■□□ 2.23
PTPN4-211ENST00000488279 DUOX1Q9NRD9 1551 aa28.96■■■□□ 2.23
PTPN4-211ENST00000488279 LRRC37AA6NMS7 1700 aa28.95■■■□□ 2.23
PTPN4-211ENST00000488279 VEGFBP49765 207 aa28.95■■■□□ 2.22
PTPN4-211ENST00000488279 CNOT7Q9UIV1 285 aaKnown RBP28.95■■■□□ 2.22
PTPN4-211ENST00000488279 H7C1D1 291 aa28.94■■■□□ 2.22
PTPN4-211ENST00000488279 CWF19L2Q2TBE0 894 aaKnown RBP28.94■■■□□ 2.22
PTPN4-211ENST00000488279 DEFB115Q30KQ5 88 aa28.94■■■□□ 2.22
PTPN4-211ENST00000488279 ANKRD18AQ8IVF6 992 aa28.94■■■□□ 2.22
PTPN4-211ENST00000488279 ABT1Q9ULW3 272 aaKnown RBP28.94■■■□□ 2.22
PTPN4-211ENST00000488279 RASSF10A6NK89 507 aa28.93■■■□□ 2.22
PTPN4-211ENST00000488279 NEURL1BA8MQ27 555 aa28.93■■■□□ 2.22
PTPN4-211ENST00000488279 CTSWP56202 376 aa28.93■■■□□ 2.22
PTPN4-211ENST00000488279 DOK7Q18PE1 504 aa28.93■■■□□ 2.22
PTPN4-211ENST00000488279 GGA1Q9UJY5 639 aa28.93■■■□□ 2.22
PTPN4-211ENST00000488279 PSMD14O00487 310 aa28.92■■■□□ 2.22
PTPN4-211ENST00000488279 ECE2O60344 883 aa28.92■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms