RNA–Protein interactions for RNA: ENST00000485780.1

SHROOM3-207, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 531 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-207ENST00000485780 KDM2BQ8NHM5 1336 aa11.78□□□□□ -0.52
SHROOM3-207ENST00000485780 TAF1P21675 1872 aa11.77□□□□□ -0.53
SHROOM3-207ENST00000485780 IRS4O14654 1257 aaPredicted RBP11.77□□□□□ -0.53
SHROOM3-207ENST00000485780 HSP90B1P14625 803 aaKnown RBP11.77□□□□□ -0.53
SHROOM3-207ENST00000485780 NPR1P16066 1061 aa11.77□□□□□ -0.53
SHROOM3-207ENST00000485780 PDE3AQ14432 1141 aa11.77□□□□□ -0.53
SHROOM3-207ENST00000485780 SOGA3Q5TF21 947 aa11.77□□□□□ -0.53
SHROOM3-207ENST00000485780 PRPF40BQ6NWY9 871 aaKnown RBP11.77□□□□□ -0.53
SHROOM3-207ENST00000485780 UBE3BQ7Z3V4 1068 aa11.77□□□□□ -0.53
SHROOM3-207ENST00000485780 DZIP1LQ8IYY4 767 aaKnown RBP11.77□□□□□ -0.53
SHROOM3-207ENST00000485780 USP44Q9H0E7 712 aa11.77□□□□□ -0.53
SHROOM3-207ENST00000485780 COL4A1P02462 1669 aa11.77□□□□□ -0.53
SHROOM3-207ENST00000485780 RTL9Q8NET4 1388 aa11.77□□□□□ -0.53
SHROOM3-207ENST00000485780 SLX4Q8IY92 1834 aa11.76□□□□□ -0.53
SHROOM3-207ENST00000485780 MS4A1P11836 297 aa11.76□□□□□ -0.53
SHROOM3-207ENST00000485780 HOXA10P31260 410 aaPredicted RBP11.76□□□□□ -0.53
SHROOM3-207ENST00000485780 RRP1P56182 461 aaKnown RBP11.76□□□□□ -0.53
SHROOM3-207ENST00000485780 SF3B3Q15393 1217 aaKnown RBP11.76□□□□□ -0.53
SHROOM3-207ENST00000485780 C3orf67Q6ZVT6 689 aa11.76□□□□□ -0.53
SHROOM3-207ENST00000485780 C16orf71Q8IYS4 520 aaPredicted RBP11.76□□□□□ -0.53
SHROOM3-207ENST00000485780 TMEM57Q8N5G2 664 aa11.76□□□□□ -0.53
SHROOM3-207ENST00000485780 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.76□□□□□ -0.53
SHROOM3-207ENST00000485780 CLUAP1Q96AJ1 413 aa11.76□□□□□ -0.53
SHROOM3-207ENST00000485780 ZC3H4Q9UPT8 1303 aaKnown RBP11.76□□□□□ -0.53
SHROOM3-207ENST00000485780 A0A1B0GUL6 1792 aa11.75□□□□□ -0.53
SHROOM3-207ENST00000485780 NFKBIEO00221 500 aa11.75□□□□□ -0.53
SHROOM3-207ENST00000485780 KIF3CO14782 793 aa11.75□□□□□ -0.53
SHROOM3-207ENST00000485780 PDE8AO60658 829 aa11.75□□□□□ -0.53
SHROOM3-207ENST00000485780 NBPF7P0C2Y1 421 aaPredicted RBP11.75□□□□□ -0.53
SHROOM3-207ENST00000485780 HCLS1P14317 486 aaPredicted RBP11.75□□□□□ -0.53
SHROOM3-207ENST00000485780 FTSJ3Q8IY81 847 aaKnown RBP11.75□□□□□ -0.53
SHROOM3-207ENST00000485780 KAZALD1Q96I82 304 aa11.75□□□□□ -0.53
SHROOM3-207ENST00000485780 NLRP3Q96P20 1036 aa11.75□□□□□ -0.53
SHROOM3-207ENST00000485780 NMRK2Q9NPI5 230 aa11.75□□□□□ -0.53
SHROOM3-207ENST00000485780 LTBP1Q14766 1721 aa11.74□□□□□ -0.53
SHROOM3-207ENST00000485780 SPEF2Q9C093 1822 aa11.74□□□□□ -0.53
SHROOM3-207ENST00000485780 FER1L6Q2WGJ9 1857 aa11.74□□□□□ -0.53
SHROOM3-207ENST00000485780 PLIN1O60240 522 aa11.74□□□□□ -0.53
SHROOM3-207ENST00000485780 ALDH1B1P30837 517 aa11.74□□□□□ -0.53
SHROOM3-207ENST00000485780 CTSWP56202 376 aa11.74□□□□□ -0.53
SHROOM3-207ENST00000485780 FOXO4P98177 505 aa11.74□□□□□ -0.53
SHROOM3-207ENST00000485780 RABL6Q3YEC7 729 aaPredicted RBP11.74□□□□□ -0.53
SHROOM3-207ENST00000485780 CCDC93Q567U6 631 aa11.74□□□□□ -0.53
SHROOM3-207ENST00000485780 PANK1Q8TE04 598 aa11.74□□□□□ -0.53
SHROOM3-207ENST00000485780 RPGRQ92834 1020 aaKnown RBP11.74□□□□□ -0.53
SHROOM3-207ENST00000485780 MEIS3Q99687 375 aa11.74□□□□□ -0.53
SHROOM3-207ENST00000485780 TAOK3Q9H2K8 898 aa11.74□□□□□ -0.53
SHROOM3-207ENST00000485780 C9orf78Q9NZ63 289 aaPredicted RBP11.74□□□□□ -0.53
SHROOM3-207ENST00000485780 SNED1Q8TER0 1413 aa11.74□□□□□ -0.53
SHROOM3-207ENST00000485780 TOMM70O94826 608 aa11.73□□□□□ -0.53
SHROOM3-207ENST00000485780 CSF1RP07333 972 aa11.73□□□□□ -0.53
SHROOM3-207ENST00000485780 MVPQ14764 893 aaKnown RBP11.73□□□□□ -0.53
SHROOM3-207ENST00000485780 RTL5Q5HYW3 569 aaPredicted RBP11.73□□□□□ -0.53
SHROOM3-207ENST00000485780 C20orf194Q5TEA3 1177 aa11.73□□□□□ -0.53
SHROOM3-207ENST00000485780 TTLL11Q8NHH1 800 aa11.73□□□□□ -0.53
SHROOM3-207ENST00000485780 JARID2Q92833 1246 aaPredicted RBP11.73□□□□□ -0.53
SHROOM3-207ENST00000485780 SUCLG2Q96I99 432 aa11.73□□□□□ -0.53
SHROOM3-207ENST00000485780 CRAMP1Q96RY5 1269 aa11.73□□□□□ -0.53
SHROOM3-207ENST00000485780 LTBP3Q9NS15 1303 aa11.72□□□□□ -0.53
SHROOM3-207ENST00000485780 GNAI3P08754 354 aa11.72□□□□□ -0.53
SHROOM3-207ENST00000485780 EPHA10Q5JZY3 1008 aa11.72□□□□□ -0.53
SHROOM3-207ENST00000485780 ANKRD44Q8N8A2 993 aa11.72□□□□□ -0.53
SHROOM3-207ENST00000485780 RRAGCQ9HB90 399 aa11.72□□□□□ -0.53
SHROOM3-207ENST00000485780 CEP350Q5VT06 3117 aa11.72□□□□□ -0.53
SHROOM3-207ENST00000485780 GLTPD2A6NH11 291 aa11.71□□□□□ -0.53
SHROOM3-207ENST00000485780 ZBTB7BO15156 539 aaPredicted RBP11.71□□□□□ -0.53
SHROOM3-207ENST00000485780 UBTFL1P0CB47 393 aaPredicted RBP11.71□□□□□ -0.53
SHROOM3-207ENST00000485780 PRELPP51888 382 aa11.71□□□□□ -0.53
SHROOM3-207ENST00000485780 MTX1Q13505 466 aa11.71□□□□□ -0.53
SHROOM3-207ENST00000485780 CCDC152Q4G0S7 254 aa11.71□□□□□ -0.53
SHROOM3-207ENST00000485780 DPY19L2Q6NUT2 758 aa11.71□□□□□ -0.53
SHROOM3-207ENST00000485780 ITPRIPQ8IWB1 547 aa11.71□□□□□ -0.53
SHROOM3-207ENST00000485780 RBM17Q96I25 401 aaKnown RBP11.71□□□□□ -0.53
SHROOM3-207ENST00000485780 DDX19BQ9UMR2 479 aa11.71□□□□□ -0.53
SHROOM3-207ENST00000485780 HDAC5Q9UQL6 1122 aa11.71□□□□□ -0.53
SHROOM3-207ENST00000485780 TIAM2Q8IVF5 1701 aa11.7□□□□□ -0.54
SHROOM3-207ENST00000485780 HSPA6P17066 643 aa11.7□□□□□ -0.54
SHROOM3-207ENST00000485780 FKBP4Q02790 459 aaKnown RBP eCLIP11.7□□□□□ -0.54
SHROOM3-207ENST00000485780 RTKN2Q8IZC4 609 aa11.7□□□□□ -0.54
SHROOM3-207ENST00000485780 C7orf43Q8WVR3 580 aa11.7□□□□□ -0.54
SHROOM3-207ENST00000485780 TMX4Q9H1E5 349 aaPredicted RBP11.7□□□□□ -0.54
SHROOM3-207ENST00000485780 BICC1Q9H694 974 aaKnown RBP11.7□□□□□ -0.54
SHROOM3-207ENST00000485780 SBF1O95248 1867 aa11.7□□□□□ -0.54
SHROOM3-207ENST00000485780 GRAPQ13588 217 aa11.69□□□□□ -0.54
SHROOM3-207ENST00000485780 FAM161AQ3B820 660 aa11.69□□□□□ -0.54
SHROOM3-207ENST00000485780 DDX46Q7L014 1031 aaKnown RBP11.69□□□□□ -0.54
SHROOM3-207ENST00000485780 TMC4Q7Z404 712 aa11.69□□□□□ -0.54
SHROOM3-207ENST00000485780 RBM46Q8TBY0 533 aaKnown RBP11.69□□□□□ -0.54
SHROOM3-207ENST00000485780 GRAPLQ8TC17 118 aaPredicted RBP11.69□□□□□ -0.54
SHROOM3-207ENST00000485780 GREM2Q9H772 168 aa11.69□□□□□ -0.54
SHROOM3-207ENST00000485780 COG6Q9Y2V7 657 aa11.69□□□□□ -0.54
SHROOM3-207ENST00000485780 LRRFIP2Q9Y608 721 aaKnown RBP11.69□□□□□ -0.54
SHROOM3-207ENST00000485780 DUOX1Q9NRD9 1551 aa11.69□□□□□ -0.54
SHROOM3-207ENST00000485780 PPEF1O14829 653 aaPredicted RBP11.68□□□□□ -0.54
SHROOM3-207ENST00000485780 VEGFAP15692 232 aaPredicted RBP11.68□□□□□ -0.54
SHROOM3-207ENST00000485780 CC2D2BQ6DHV5 1058 aa11.68□□□□□ -0.54
SHROOM3-207ENST00000485780 LMBR1LQ6UX01 489 aa11.68□□□□□ -0.54
SHROOM3-207ENST00000485780 CELF1Q92879 486 aaKnown RBP11.68□□□□□ -0.54
SHROOM3-207ENST00000485780 SEC31BQ9NQW1 1179 aa11.68□□□□□ -0.54
SHROOM3-207ENST00000485780 ZBTB40Q9NUA8 1239 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms