RNA–Protein interactions for RNA: ENST00000485124.1

TMEM40-208, Transcript of transmembrane protein 40, human

TSL 5

Gene TMEM40, Length 927 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMEM40-208	ENST00000485124	AIMP1	Q12904	312 aa	Known RBP	12.84	□□□□□ -0.35
TMEM40-208	ENST00000485124	TRIM28	Q13263	835 aa	Known RBP	12.84	□□□□□ -0.35
TMEM40-208	ENST00000485124	HDGFL1	Q5TGJ6	251 aa		12.84	□□□□□ -0.35
TMEM40-208	ENST00000485124	MAP1S	Q66K74	1059 aa	Predicted RBP	12.84	□□□□□ -0.35
TMEM40-208	ENST00000485124	DPP8	Q6V1X1	898 aa	Predicted RBP	12.84	□□□□□ -0.35
TMEM40-208	ENST00000485124	ANKRD13D	Q6ZTN6	518 aa		12.84	□□□□□ -0.35
TMEM40-208	ENST00000485124	CCDC146	Q8IYE0	955 aa		12.84	□□□□□ -0.35
TMEM40-208	ENST00000485124	PRDM10	Q9NQV6	1147 aa		12.84	□□□□□ -0.35
TMEM40-208	ENST00000485124	ADARB2	Q9NS39	739 aa	Known RBP	12.84	□□□□□ -0.35
TMEM40-208	ENST00000485124	HYPK	Q9NX55	129 aa		12.84	□□□□□ -0.35
TMEM40-208	ENST00000485124	CHPF2	Q9P2E5	772 aa		12.84	□□□□□ -0.35
TMEM40-208	ENST00000485124	ADAMTS8	Q9UP79	889 aa		12.84	□□□□□ -0.35
TMEM40-208	ENST00000485124	TAF1	P21675	1872 aa		12.83	□□□□□ -0.36
TMEM40-208	ENST00000485124	VEGFB	P49765	207 aa		12.83	□□□□□ -0.36
TMEM40-208	ENST00000485124	CALD1	Q05682	793 aa	Known RBP	12.83	□□□□□ -0.36
TMEM40-208	ENST00000485124	SF3B3	Q15393	1217 aa	Known RBP	12.83	□□□□□ -0.36
TMEM40-208	ENST00000485124	NEUROD2	Q15784	382 aa		12.83	□□□□□ -0.36
TMEM40-208	ENST00000485124	AOC3	Q16853	763 aa		12.83	□□□□□ -0.36
TMEM40-208	ENST00000485124	DEFB115	Q30KQ5	88 aa		12.83	□□□□□ -0.36
TMEM40-208	ENST00000485124	MPND	Q8N594	471 aa		12.83	□□□□□ -0.36
TMEM40-208	ENST00000485124	ISCA1	Q9BUE6	129 aa		12.83	□□□□□ -0.36
TMEM40-208	ENST00000485124	CHMP4A	Q9BY43	222 aa		12.83	□□□□□ -0.36
TMEM40-208	ENST00000485124	GPRC5D	Q9NZD1	345 aa		12.83	□□□□□ -0.36
TMEM40-208	ENST00000485124	ZBED9	Q6R2W3	1325 aa		12.83	□□□□□ -0.36
TMEM40-208	ENST00000485124	DUOX1	Q9NRD9	1551 aa		12.82	□□□□□ -0.36
TMEM40-208	ENST00000485124	ZNF853	P0CG23	659 aa		12.82	□□□□□ -0.36
TMEM40-208	ENST00000485124	HCLS1	P14317	486 aa	Predicted RBP	12.82	□□□□□ -0.36
TMEM40-208	ENST00000485124	EPS15	P42566	896 aa		12.82	□□□□□ -0.36
TMEM40-208	ENST00000485124	CXCL9	Q07325	125 aa		12.82	□□□□□ -0.36
TMEM40-208	ENST00000485124	KRT24	Q2M2I5	525 aa		12.82	□□□□□ -0.36
TMEM40-208	ENST00000485124	ZC3H15	Q8WU90	426 aa	Known RBP	12.82	□□□□□ -0.36
TMEM40-208	ENST00000485124	NECTIN2	Q92692	538 aa		12.82	□□□□□ -0.36
TMEM40-208	ENST00000485124	AIDA	Q96BJ3	306 aa		12.82	□□□□□ -0.36
TMEM40-208	ENST00000485124	WBP1L	Q9NX94	342 aa		12.82	□□□□□ -0.36
TMEM40-208	ENST00000485124	TCERG1	O14776	1098 aa	Known RBP	12.81	□□□□□ -0.36
TMEM40-208	ENST00000485124	HSP90B1	P14625	803 aa	Known RBP	12.81	□□□□□ -0.36
TMEM40-208	ENST00000485124	CTCF	P49711	727 aa	Predicted RBP	12.81	□□□□□ -0.36
TMEM40-208	ENST00000485124	TNIP1	Q15025	636 aa		12.81	□□□□□ -0.36
TMEM40-208	ENST00000485124	CIAPIN1	Q6FI81	312 aa		12.81	□□□□□ -0.36
TMEM40-208	ENST00000485124	IFT57	Q9NWB7	429 aa		12.81	□□□□□ -0.36
TMEM40-208	ENST00000485124	PGAP2	Q9UHJ9	254 aa		12.81	□□□□□ -0.36
TMEM40-208	ENST00000485124	FOXN1	O15353	648 aa		12.8	□□□□□ -0.36
TMEM40-208	ENST00000485124	MAP2K1	Q02750	393 aa	Predicted RBP	12.8	□□□□□ -0.36
TMEM40-208	ENST00000485124	DUSP27	Q5VZP5	1158 aa		12.8	□□□□□ -0.36
TMEM40-208	ENST00000485124	LAS1L	Q9Y4W2	734 aa	Known RBP	12.8	□□□□□ -0.36
TMEM40-208	ENST00000485124	ECE1	P42892	770 aa		12.79	□□□□□ -0.36
TMEM40-208	ENST00000485124	GNAI1	P63096	354 aa		12.79	□□□□□ -0.36
TMEM40-208	ENST00000485124	SLC51A	Q86UW1	340 aa		12.79	□□□□□ -0.36
TMEM40-208	ENST00000485124	PIAS4	Q8N2W9	510 aa	Predicted RBP	12.79	□□□□□ -0.36
TMEM40-208	ENST00000485124	HHIPL1	Q96JK4	782 aa		12.79	□□□□□ -0.36
TMEM40-208	ENST00000485124	MBIP	Q9NS73	344 aa		12.79	□□□□□ -0.36
TMEM40-208	ENST00000485124	ABT1	Q9ULW3	272 aa	Known RBP	12.79	□□□□□ -0.36
TMEM40-208	ENST00000485124	WDR33	Q9C0J8	1336 aa	Known RBP	12.79	□□□□□ -0.36
TMEM40-208	ENST00000485124	GMPS	P49915	693 aa	Predicted RBP	12.78	□□□□□ -0.36
TMEM40-208	ENST00000485124	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	12.78	□□□□□ -0.36
TMEM40-208	ENST00000485124	DPF2	Q92785	391 aa		12.78	□□□□□ -0.36
TMEM40-208	ENST00000485124	FAM89A	Q96GI7	184 aa		12.78	□□□□□ -0.36
TMEM40-208	ENST00000485124	TLL2	Q9Y6L7	1015 aa		12.78	□□□□□ -0.36
TMEM40-208	ENST00000485124	GOLGA2	Q08379	1002 aa		12.77	□□□□□ -0.37
TMEM40-208	ENST00000485124	CST9	Q5W186	159 aa		12.77	□□□□□ -0.37
TMEM40-208	ENST00000485124	FAM9B	Q8IZU0	186 aa		12.77	□□□□□ -0.37
TMEM40-208	ENST00000485124	PSME4	Q14997	1843 aa		12.76	□□□□□ -0.37
TMEM40-208	ENST00000485124	ATP5J2-PTCD1	G3V325	749 aa		12.76	□□□□□ -0.37
TMEM40-208	ENST00000485124	IRS4	O14654	1257 aa	Predicted RBP	12.76	□□□□□ -0.37
TMEM40-208	ENST00000485124	APAF1	O14727	1248 aa		12.76	□□□□□ -0.37
TMEM40-208	ENST00000485124	RPS12	P25398	132 aa	Known RBP	12.76	□□□□□ -0.37
TMEM40-208	ENST00000485124	MAP2K2	P36507	400 aa		12.76	□□□□□ -0.37
TMEM40-208	ENST00000485124	WASHC4	Q2M389	1173 aa		12.76	□□□□□ -0.37
TMEM40-208	ENST00000485124	CCDC191	Q8NCU4	936 aa		12.76	□□□□□ -0.37
TMEM40-208	ENST00000485124	CELF1	Q92879	486 aa	Known RBP	12.76	□□□□□ -0.37
TMEM40-208	ENST00000485124	EYA3	Q99504	573 aa		12.76	□□□□□ -0.37
TMEM40-208	ENST00000485124	BCL2L13	Q9BXK5	485 aa		12.76	□□□□□ -0.37
TMEM40-208	ENST00000485124	PODXL2	Q9NZ53	605 aa		12.76	□□□□□ -0.37
TMEM40-208	ENST00000485124	ZNF609	O15014	1411 aa		12.76	□□□□□ -0.37
TMEM40-208	ENST00000485124	MYH3	P11055	1940 aa		12.76	□□□□□ -0.37
TMEM40-208	ENST00000485124	CACNA1F	O60840	1977 aa		12.76	□□□□□ -0.37
TMEM40-208	ENST00000485124	YDJC	A8MPS7	323 aa		12.75	□□□□□ -0.37
TMEM40-208	ENST00000485124		H7C1D1	291 aa		12.75	□□□□□ -0.37
TMEM40-208	ENST00000485124	RAD17	O75943	681 aa		12.75	□□□□□ -0.37
TMEM40-208	ENST00000485124	RPS8	P62241	208 aa	Known RBP	12.75	□□□□□ -0.37
TMEM40-208	ENST00000485124	NCBP3	Q53F19	620 aa	Known RBP	12.75	□□□□□ -0.37
TMEM40-208	ENST00000485124	CDC37L1	Q7L3B6	337 aa		12.75	□□□□□ -0.37
TMEM40-208	ENST00000485124	RIC3	Q7Z5B4	369 aa		12.75	□□□□□ -0.37
TMEM40-208	ENST00000485124	CAPNS2	Q96L46	248 aa		12.75	□□□□□ -0.37
TMEM40-208	ENST00000485124	NSFL1C	Q9UNZ2	370 aa	Known RBP	12.75	□□□□□ -0.37
TMEM40-208	ENST00000485124	TRAF5	O00463	557 aa		12.74	□□□□□ -0.37
TMEM40-208	ENST00000485124	DDX58	O95786	925 aa	Known RBP	12.74	□□□□□ -0.37
TMEM40-208	ENST00000485124	PCCA	P05165	728 aa	Predicted RBP	12.74	□□□□□ -0.37
TMEM40-208	ENST00000485124	CCDC30	Q5VVM6	783 aa		12.74	□□□□□ -0.37
TMEM40-208	ENST00000485124	SAPCD2	Q86UD0	394 aa		12.74	□□□□□ -0.37
TMEM40-208	ENST00000485124	CNOT7	Q9UIV1	285 aa	Known RBP	12.74	□□□□□ -0.37
TMEM40-208	ENST00000485124	COL4A1	P02462	1669 aa		12.73	□□□□□ -0.37
TMEM40-208	ENST00000485124	POLR2A	P24928	1970 aa	Known RBP	12.73	□□□□□ -0.37
TMEM40-208	ENST00000485124	SCN9A	Q15858	1988 aa		12.73	□□□□□ -0.37
TMEM40-208	ENST00000485124	CA12	O43570	354 aa		12.73	□□□□□ -0.37
TMEM40-208	ENST00000485124	HSPA8	P11142	646 aa	Known RBP	12.73	□□□□□ -0.37
TMEM40-208	ENST00000485124	HIRA	P54198	1017 aa	Predicted RBP	12.73	□□□□□ -0.37
TMEM40-208	ENST00000485124	CCDC27	Q2M243	656 aa		12.73	□□□□□ -0.37
TMEM40-208	ENST00000485124	CCDC152	Q4G0S7	254 aa		12.73	□□□□□ -0.37
TMEM40-208	ENST00000485124	TBC1D16	Q8TBP0	767 aa		12.73	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 15 ms