RNA–Protein interactions for RNA: ENST00000480209.1

NUDCD3-208, Transcript of NudC domain containing 3, human

TSL 3

Gene NUDCD3, Length 488 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUDCD3-208	ENST00000480209	PPP4R2	Q9NY27	417 aa		11.23	□□□□□ -0.61
NUDCD3-208	ENST00000480209	KDM2B	Q8NHM5	1336 aa		11.23	□□□□□ -0.61
NUDCD3-208	ENST00000480209	C10orf71	Q711Q0	1435 aa		11.23	□□□□□ -0.61
NUDCD3-208	ENST00000480209	CTSW	P56202	376 aa		11.22	□□□□□ -0.61
NUDCD3-208	ENST00000480209	POLA2	Q14181	598 aa		11.22	□□□□□ -0.61
NUDCD3-208	ENST00000480209	FAM161A	Q3B820	660 aa		11.22	□□□□□ -0.61
NUDCD3-208	ENST00000480209	LMBR1L	Q6UX01	489 aa		11.22	□□□□□ -0.61
NUDCD3-208	ENST00000480209	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.22	□□□□□ -0.61
NUDCD3-208	ENST00000480209	NYX	Q9GZU5	481 aa		11.22	□□□□□ -0.61
NUDCD3-208	ENST00000480209	CHMP4B	Q9H444	224 aa	Known RBP	11.22	□□□□□ -0.61
NUDCD3-208	ENST00000480209	ARAP2	Q8WZ64	1704 aa		11.21	□□□□□ -0.61
NUDCD3-208	ENST00000480209	PDE8A	O60658	829 aa		11.21	□□□□□ -0.61
NUDCD3-208	ENST00000480209	CSF1R	P07333	972 aa		11.21	□□□□□ -0.61
NUDCD3-208	ENST00000480209	RFX5	P48382	616 aa	Predicted RBP	11.21	□□□□□ -0.61
NUDCD3-208	ENST00000480209	ATP8B2	P98198	1209 aa		11.21	□□□□□ -0.61
NUDCD3-208	ENST00000480209	HDAC1	Q13547	482 aa	Predicted RBP	11.21	□□□□□ -0.61
NUDCD3-208	ENST00000480209	SLC10A5	Q5PT55	438 aa		11.21	□□□□□ -0.61
NUDCD3-208	ENST00000480209	TTLL11	Q8NHH1	800 aa		11.21	□□□□□ -0.61
NUDCD3-208	ENST00000480209	KLHDC4	Q8TBB5	520 aa		11.21	□□□□□ -0.61
NUDCD3-208	ENST00000480209	SSH3	Q8TE77	659 aa		11.21	□□□□□ -0.61
NUDCD3-208	ENST00000480209	SLC16A10	Q8TF71	515 aa		11.21	□□□□□ -0.61
NUDCD3-208	ENST00000480209	SGIP1	Q9BQI5	828 aa		11.21	□□□□□ -0.61
NUDCD3-208	ENST00000480209	LTBP1	Q14766	1721 aa		11.21	□□□□□ -0.62
NUDCD3-208	ENST00000480209	RTL9	Q8NET4	1388 aa		11.2	□□□□□ -0.62
NUDCD3-208	ENST00000480209	SRGAP3	O43295	1099 aa		11.2	□□□□□ -0.62
NUDCD3-208	ENST00000480209	TPTE2	Q6XPS3	522 aa		11.2	□□□□□ -0.62
NUDCD3-208	ENST00000480209	SLC51A	Q86UW1	340 aa		11.2	□□□□□ -0.62
NUDCD3-208	ENST00000480209	RPAP2	Q8IXW5	612 aa	Predicted RBP	11.2	□□□□□ -0.62
NUDCD3-208	ENST00000480209	MTFR1L	Q9H019	292 aa		11.2	□□□□□ -0.62
NUDCD3-208	ENST00000480209	GREM2	Q9H772	168 aa		11.2	□□□□□ -0.62
NUDCD3-208	ENST00000480209	PA2G4	Q9UQ80	394 aa	Known RBP	11.2	□□□□□ -0.62
NUDCD3-208	ENST00000480209	ATF5	Q9Y2D1	282 aa	Predicted RBP	11.2	□□□□□ -0.62
NUDCD3-208	ENST00000480209	PARP3	Q9Y6F1	533 aa		11.2	□□□□□ -0.62
NUDCD3-208	ENST00000480209	SLX4	Q8IY92	1834 aa		11.19	□□□□□ -0.62
NUDCD3-208	ENST00000480209	PTGER2	P43116	358 aa		11.19	□□□□□ -0.62
NUDCD3-208	ENST00000480209	CCDC136	Q96JN2	1154 aa		11.19	□□□□□ -0.62
NUDCD3-208	ENST00000480209	CHMP3	Q9Y3E7	222 aa		11.19	□□□□□ -0.62
NUDCD3-208	ENST00000480209	SOCS7	O14512	581 aa		11.18	□□□□□ -0.62
NUDCD3-208	ENST00000480209	GTF2E1	P29083	439 aa	Predicted RBP	11.18	□□□□□ -0.62
NUDCD3-208	ENST00000480209	ST5	P78524	1137 aa		11.18	□□□□□ -0.62
NUDCD3-208	ENST00000480209	PTPN12	Q05209	780 aa	Known RBP	11.18	□□□□□ -0.62
NUDCD3-208	ENST00000480209	ZNF594	Q96JF6	807 aa	Predicted RBP	11.18	□□□□□ -0.62
NUDCD3-208	ENST00000480209	SEC31B	Q9NQW1	1179 aa		11.18	□□□□□ -0.62
NUDCD3-208	ENST00000480209	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	11.18	□□□□□ -0.62
NUDCD3-208	ENST00000480209	ITGA6	P23229	1130 aa		11.17	□□□□□ -0.62
NUDCD3-208	ENST00000480209	SF3B3	Q15393	1217 aa	Known RBP	11.17	□□□□□ -0.62
NUDCD3-208	ENST00000480209	CRY2	Q49AN0	593 aa		11.17	□□□□□ -0.62
NUDCD3-208	ENST00000480209	SKAP1	Q86WV1	359 aa		11.17	□□□□□ -0.62
NUDCD3-208	ENST00000480209	SMC5	Q8IY18	1101 aa		11.17	□□□□□ -0.62
NUDCD3-208	ENST00000480209	EXOC6B	Q9Y2D4	811 aa		11.17	□□□□□ -0.62
NUDCD3-208	ENST00000480209	KLRG2	A4D1S0	409 aa	Predicted RBP	11.16	□□□□□ -0.62
NUDCD3-208	ENST00000480209	NPHP1	O15259	732 aa		11.16	□□□□□ -0.62
NUDCD3-208	ENST00000480209	CCDC152	Q4G0S7	254 aa		11.16	□□□□□ -0.62
NUDCD3-208	ENST00000480209	PUS3	Q9BZE2	481 aa	Known RBP	11.16	□□□□□ -0.62
NUDCD3-208	ENST00000480209	SIL1	Q9H173	461 aa		11.16	□□□□□ -0.62
NUDCD3-208	ENST00000480209	COPRS	Q9NQ92	184 aa		11.16	□□□□□ -0.62
NUDCD3-208	ENST00000480209	HDAC5	Q9UQL6	1122 aa		11.16	□□□□□ -0.62
NUDCD3-208	ENST00000480209	DUOX1	Q9NRD9	1551 aa		11.16	□□□□□ -0.62
NUDCD3-208	ENST00000480209	HMMR	O75330	724 aa		11.15	□□□□□ -0.62
NUDCD3-208	ENST00000480209	IFIT5	Q13325	482 aa	Known RBP	11.15	□□□□□ -0.62
NUDCD3-208	ENST00000480209	LRRC24	Q50LG9	513 aa		11.15	□□□□□ -0.62
NUDCD3-208	ENST00000480209	CENPQ	Q7L2Z9	268 aa	Predicted RBP	11.15	□□□□□ -0.62
NUDCD3-208	ENST00000480209	ATG9A	Q7Z3C6	839 aa		11.15	□□□□□ -0.62
NUDCD3-208	ENST00000480209	CELF1	Q92879	486 aa	Known RBP	11.15	□□□□□ -0.62
NUDCD3-208	ENST00000480209	NLRP3	Q96P20	1036 aa		11.15	□□□□□ -0.62
NUDCD3-208	ENST00000480209	BRIP1	Q9BX63	1249 aa		11.15	□□□□□ -0.62
NUDCD3-208	ENST00000480209	RWDD1	Q9H446	243 aa	Predicted RBP	11.15	□□□□□ -0.62
NUDCD3-208	ENST00000480209	DCTPP1	Q9H773	170 aa		11.15	□□□□□ -0.62
NUDCD3-208	ENST00000480209	NOP58	Q9Y2X3	529 aa	Known RBP	11.15	□□□□□ -0.62
NUDCD3-208	ENST00000480209	ARFGEF1	Q9Y6D6	1849 aa		11.14	□□□□□ -0.63
NUDCD3-208	ENST00000480209	ANKRD18B	A2A2Z9	1011 aa		11.14	□□□□□ -0.63
NUDCD3-208	ENST00000480209	APBB1	O00213	710 aa		11.14	□□□□□ -0.63
NUDCD3-208	ENST00000480209	SMARCA5	O60264	1052 aa	Predicted RBP	11.14	□□□□□ -0.63
NUDCD3-208	ENST00000480209	CCDC57	Q2TAC2	916 aa		11.14	□□□□□ -0.63
NUDCD3-208	ENST00000480209	ZNF609	O15014	1411 aa		11.14	□□□□□ -0.63
NUDCD3-208	ENST00000480209	MYH13	Q9UKX3	1938 aa		11.13	□□□□□ -0.63
NUDCD3-208	ENST00000480209	SURF6	O75683	361 aa	Known RBP	11.13	□□□□□ -0.63
NUDCD3-208	ENST00000480209	SASH1	O94885	1247 aa		11.13	□□□□□ -0.63
NUDCD3-208	ENST00000480209	SRGN	P10124	158 aa		11.13	□□□□□ -0.63
NUDCD3-208	ENST00000480209	HSP90B1	P14625	803 aa	Known RBP	11.13	□□□□□ -0.63
NUDCD3-208	ENST00000480209	CHRNA5	P30532	468 aa		11.13	□□□□□ -0.63
NUDCD3-208	ENST00000480209	SNED1	Q8TER0	1413 aa		11.12	□□□□□ -0.63
NUDCD3-208	ENST00000480209	AK9	Q5TCS8	1911 aa		11.12	□□□□□ -0.63
NUDCD3-208	ENST00000480209	EYA2	O00167	538 aa		11.12	□□□□□ -0.63
NUDCD3-208	ENST00000480209	PDE4A	P27815	886 aa		11.12	□□□□□ -0.63
NUDCD3-208	ENST00000480209	POLD1	P28340	1107 aa		11.12	□□□□□ -0.63
NUDCD3-208	ENST00000480209	HOXA10	P31260	410 aa	Predicted RBP	11.12	□□□□□ -0.63
NUDCD3-208	ENST00000480209	C2CD5	Q86YS7	1000 aa		11.12	□□□□□ -0.63
NUDCD3-208	ENST00000480209	VGLL2	Q8N8G2	317 aa		11.12	□□□□□ -0.63
NUDCD3-208	ENST00000480209	GCC1	Q96CN9	775 aa		11.12	□□□□□ -0.63
NUDCD3-208	ENST00000480209	PDZRN3	Q9UPQ7	1066 aa		11.12	□□□□□ -0.63
NUDCD3-208	ENST00000480209	ZNF646	O15015	1829 aa	Predicted RBP	11.12	□□□□□ -0.63
NUDCD3-208	ENST00000480209	FER1L6	Q2WGJ9	1857 aa		11.11	□□□□□ -0.63
NUDCD3-208	ENST00000480209	CIAO1	O76071	339 aa		11.11	□□□□□ -0.63
NUDCD3-208	ENST00000480209	PDE6B	P35913	854 aa		11.11	□□□□□ -0.63
NUDCD3-208	ENST00000480209	TFCP2	Q12800	502 aa		11.11	□□□□□ -0.63
NUDCD3-208	ENST00000480209	GRAP	Q13588	217 aa		11.11	□□□□□ -0.63
NUDCD3-208	ENST00000480209	TAF7L	Q5H9L4	462 aa		11.11	□□□□□ -0.63
NUDCD3-208	ENST00000480209	DDX46	Q7L014	1031 aa	Known RBP	11.11	□□□□□ -0.63
NUDCD3-208	ENST00000480209	GRAPL	Q8TC17	118 aa	Predicted RBP	11.11	□□□□□ -0.63

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