RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 CELF1Q92879 486 aaKnown RBP18.21■□□□□ 0.51
UPF3A-204ENST00000475218 SPINK5Q9NQ38 1064 aaPredicted RBP18.21■□□□□ 0.51
UPF3A-204ENST00000475218 IRS4O14654 1257 aaPredicted RBP18.2■□□□□ 0.5
UPF3A-204ENST00000475218 CHADLQ6NUI6 762 aa18.2■□□□□ 0.5
UPF3A-204ENST00000475218 ZBTB38Q8NAP3 1195 aaPredicted RBP18.2■□□□□ 0.5
UPF3A-204ENST00000475218 METTL22Q9BUU2 404 aaPredicted RBP18.2■□□□□ 0.5
UPF3A-204ENST00000475218 SALL2Q9Y467 1007 aaPredicted RBP18.2■□□□□ 0.5
UPF3A-204ENST00000475218 IQCA1LA6NCM1 817 aa18.19■□□□□ 0.5
UPF3A-204ENST00000475218 IGKV5-2P06315 115 aa18.19■□□□□ 0.5
UPF3A-204ENST00000475218 JDP2Q8WYK2 163 aa18.19■□□□□ 0.5
UPF3A-204ENST00000475218 JARID2Q92833 1246 aaPredicted RBP18.19■□□□□ 0.5
UPF3A-204ENST00000475218 CCDC191Q8NCU4 936 aa18.19■□□□□ 0.5
UPF3A-204ENST00000475218 MAP3K2Q9Y2U5 619 aa18.19■□□□□ 0.5
UPF3A-204ENST00000475218 PI4KAP2A4QPH2 592 aa18.18■□□□□ 0.5
UPF3A-204ENST00000475218 PPIP5K2O43314 1243 aa18.18■□□□□ 0.5
UPF3A-204ENST00000475218 SCNN1DP51172 638 aa18.18■□□□□ 0.5
UPF3A-204ENST00000475218 WDR63Q8IWG1 891 aa18.18■□□□□ 0.5
UPF3A-204ENST00000475218 PI4KAP1Q8N8J0 262 aa18.18■□□□□ 0.5
UPF3A-204ENST00000475218 KLRG1Q96E93 195 aa18.18■□□□□ 0.5
UPF3A-204ENST00000475218 HACL1Q9UJ83 578 aa18.18■□□□□ 0.5
UPF3A-204ENST00000475218 PCCAP05165 728 aaPredicted RBP18.17■□□□□ 0.5
UPF3A-204ENST00000475218 EPHX2P34913 555 aa18.17■□□□□ 0.5
UPF3A-204ENST00000475218 DPP8Q6V1X1 898 aaPredicted RBP18.17■□□□□ 0.5
UPF3A-204ENST00000475218 MPNDQ8N594 471 aa18.17■□□□□ 0.5
UPF3A-204ENST00000475218 KSR2Q6VAB6 950 aa18.17■□□□□ 0.5
UPF3A-204ENST00000475218 LDHDQ86WU2 507 aa18.17■□□□□ 0.5
UPF3A-204ENST00000475218 VPS33BQ9H267 617 aa18.17■□□□□ 0.5
UPF3A-204ENST00000475218 GJA3Q9Y6H8 435 aa18.17■□□□□ 0.5
UPF3A-204ENST00000475218 ITGBL1O95965 494 aaPredicted RBP18.16■□□□□ 0.5
UPF3A-204ENST00000475218 EIF6P56537 245 aaKnown RBP18.16■□□□□ 0.5
UPF3A-204ENST00000475218 KIAA2012Q0VF49 1180 aa18.16■□□□□ 0.5
UPF3A-204ENST00000475218 NIM1KQ8IY84 436 aa18.16■□□□□ 0.5
UPF3A-204ENST00000475218 JMYQ8N9B5 988 aa18.16■□□□□ 0.5
UPF3A-204ENST00000475218 SEC31BQ9NQW1 1179 aa18.16■□□□□ 0.5
UPF3A-204ENST00000475218 CWC25Q9NXE8 425 aaPredicted RBP18.16■□□□□ 0.5
UPF3A-204ENST00000475218 PASKQ96RG2 1323 aa18.16■□□□□ 0.5
UPF3A-204ENST00000475218 VAMP4O75379 141 aa18.15■□□□□ 0.5
UPF3A-204ENST00000475218 DDX58O95786 925 aaKnown RBP18.15■□□□□ 0.5
UPF3A-204ENST00000475218 SLC4A2P04920 1241 aa18.15■□□□□ 0.5
UPF3A-204ENST00000475218 CXCL9Q07325 125 aa18.15■□□□□ 0.5
UPF3A-204ENST00000475218 FAM9BQ8IZU0 186 aa18.15■□□□□ 0.5
UPF3A-204ENST00000475218 YDJCA8MPS7 323 aa18.14■□□□□ 0.5
UPF3A-204ENST00000475218 EPS15P42566 896 aa18.14■□□□□ 0.5
UPF3A-204ENST00000475218 EXOSC9Q06265 439 aaKnown RBP18.14■□□□□ 0.5
UPF3A-204ENST00000475218 CWF19L2Q2TBE0 894 aaKnown RBP18.14■□□□□ 0.5
UPF3A-204ENST00000475218 EAPPQ56P03 285 aaPredicted RBP18.14■□□□□ 0.5
UPF3A-204ENST00000475218 TMC4Q7Z404 712 aa18.14■□□□□ 0.5
UPF3A-204ENST00000475218 SUPT20HQ8NEM7 779 aa18.14■□□□□ 0.5
UPF3A-204ENST00000475218 GPSM2P81274 684 aa18.14■□□□□ 0.49
UPF3A-204ENST00000475218 STK31Q9BXU1 1019 aa18.14■□□□□ 0.49
UPF3A-204ENST00000475218 CHMP4AQ9BY43 222 aa18.14■□□□□ 0.49
UPF3A-204ENST00000475218 POLLQ9UGP5 575 aa18.14■□□□□ 0.49
UPF3A-204ENST00000475218 ZNRF3Q9ULT6 936 aa18.14■□□□□ 0.49
UPF3A-204ENST00000475218 ZNF521Q96K83 1311 aa18.13■□□□□ 0.49
UPF3A-204ENST00000475218 TMX4Q9H1E5 349 aaPredicted RBP18.13■□□□□ 0.49
UPF3A-204ENST00000475218 CACNA1FO60840 1977 aa18.13■□□□□ 0.49
UPF3A-204ENST00000475218 CDHR2Q9BYE9 1310 aa18.12■□□□□ 0.49
UPF3A-204ENST00000475218 NEURL1BA8MQ27 555 aa18.12■□□□□ 0.49
UPF3A-204ENST00000475218 PDE8AO60658 829 aa18.12■□□□□ 0.49
UPF3A-204ENST00000475218 RPS8P62241 208 aaKnown RBP18.12■□□□□ 0.49
UPF3A-204ENST00000475218 FLIIQ13045 1269 aa18.12■□□□□ 0.49
UPF3A-204ENST00000475218 MAP1SQ66K74 1059 aaPredicted RBP18.12■□□□□ 0.49
UPF3A-204ENST00000475218 GPR101Q96P66 508 aaPredicted RBP18.12■□□□□ 0.49
UPF3A-204ENST00000475218 CCDC85AQ96PX6 553 aaPredicted RBP18.12■□□□□ 0.49
UPF3A-204ENST00000475218 NSFL1CQ9UNZ2 370 aaKnown RBP18.11■□□□□ 0.49
UPF3A-204ENST00000475218 MYH3P11055 1940 aa18.11■□□□□ 0.49
UPF3A-204ENST00000475218 RAD17O75943 681 aa18.1■□□□□ 0.49
UPF3A-204ENST00000475218 PNMA8AQ86V59 439 aaPredicted RBP18.1■□□□□ 0.49
UPF3A-204ENST00000475218 GPRC5DQ9NZD1 345 aa18.1■□□□□ 0.49
UPF3A-204ENST00000475218 H7C1W4 665 aa18.09■□□□□ 0.49
UPF3A-204ENST00000475218 GMPSP49915 693 aaPredicted RBP18.09■□□□□ 0.49
UPF3A-204ENST00000475218 CASP7P55210 303 aa18.09■□□□□ 0.49
UPF3A-204ENST00000475218 TBC1D16Q8TBP0 767 aa18.09■□□□□ 0.49
UPF3A-204ENST00000475218 CREBZFQ9NS37 354 aa18.09■□□□□ 0.49
UPF3A-204ENST00000475218 SCN9AQ15858 1988 aa18.09■□□□□ 0.49
UPF3A-204ENST00000475218 CTSWP56202 376 aa18.09■□□□□ 0.49
UPF3A-204ENST00000475218 CCDC152Q4G0S7 254 aa18.09■□□□□ 0.49
UPF3A-204ENST00000475218 TTLL11Q8NHH1 800 aa18.09■□□□□ 0.49
UPF3A-204ENST00000475218 CLEC11AQ9Y240 323 aa18.09■□□□□ 0.49
UPF3A-204ENST00000475218 SPEF2Q9C093 1822 aa18.08■□□□□ 0.49
UPF3A-204ENST00000475218 SHTN1A0MZ66 631 aa18.08■□□□□ 0.48
UPF3A-204ENST00000475218 WASHC4Q2M389 1173 aa18.08■□□□□ 0.48
UPF3A-204ENST00000475218 CIAPIN1Q6FI81 312 aa18.08■□□□□ 0.48
UPF3A-204ENST00000475218 CNTROBQ8N137 903 aa18.08■□□□□ 0.48
UPF3A-204ENST00000475218 KCNQ5Q9NR82 932 aa18.08■□□□□ 0.48
UPF3A-204ENST00000475218 PODXL2Q9NZ53 605 aa18.08■□□□□ 0.48
UPF3A-204ENST00000475218 FMR1Q06787 632 aaKnown RBP eCLIP18.07■□□□□ 0.48
UPF3A-204ENST00000475218 GCKRQ14397 625 aa18.07■□□□□ 0.48
UPF3A-204ENST00000475218 WTIPA6NIX2 430 aaPredicted RBP18.07■□□□□ 0.48
UPF3A-204ENST00000475218 C6orf229H3BNL8 230 aa18.07■□□□□ 0.48
UPF3A-204ENST00000475218 RIMBP2O15034 1052 aa18.07■□□□□ 0.48
UPF3A-204ENST00000475218 HSP90B1P14625 803 aaKnown RBP18.07■□□□□ 0.48
UPF3A-204ENST00000475218 LMOD1P29536 600 aaPredicted RBP18.07■□□□□ 0.48
UPF3A-204ENST00000475218 NEXNQ0ZGT2 675 aa18.07■□□□□ 0.48
UPF3A-204ENST00000475218 FKBP5Q13451 457 aaPredicted RBP18.07■□□□□ 0.48
UPF3A-204ENST00000475218 UBE3BQ7Z3V4 1068 aa18.07■□□□□ 0.48
UPF3A-204ENST00000475218 DNAAF4Q8WXU2 420 aa18.07■□□□□ 0.48
UPF3A-204ENST00000475218 GREM2Q9H772 168 aa18.07■□□□□ 0.48
UPF3A-204ENST00000475218 DBNDD1Q9H9R9 158 aa18.07■□□□□ 0.48
UPF3A-204ENST00000475218 RTL9Q8NET4 1388 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms