RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 GOLGA2Q08379 1002 aa24.32■■□□□ 1.48
CCDC88B-206ENST00000473405 IFFO2Q5TF58 517 aa24.32■■□□□ 1.48
CCDC88B-206ENST00000473405 DPP8Q6V1X1 898 aaPredicted RBP24.32■■□□□ 1.48
CCDC88B-206ENST00000473405 VPS33BQ9H267 617 aa24.32■■□□□ 1.48
CCDC88B-206ENST00000473405 SF3B3Q15393 1217 aaKnown RBP24.31■■□□□ 1.48
CCDC88B-206ENST00000473405 CCDC27Q2M243 656 aa24.31■■□□□ 1.48
CCDC88B-206ENST00000473405 RIC3Q7Z5B4 369 aa24.31■■□□□ 1.48
CCDC88B-206ENST00000473405 PNMA8AQ86V59 439 aaPredicted RBP24.31■■□□□ 1.48
CCDC88B-206ENST00000473405 TSPYL6Q8N831 410 aa24.31■■□□□ 1.48
CCDC88B-206ENST00000473405 SUPT20HQ8NEM7 779 aa24.31■■□□□ 1.48
CCDC88B-206ENST00000473405 TSR2Q969E8 191 aaKnown RBP24.31■■□□□ 1.48
CCDC88B-206ENST00000473405 RTL5Q5HYW3 569 aaPredicted RBP24.3■■□□□ 1.48
CCDC88B-206ENST00000473405 MPNDQ8N594 471 aa24.3■■□□□ 1.48
CCDC88B-206ENST00000473405 TMC4Q7Z404 712 aa24.29■■□□□ 1.48
CCDC88B-206ENST00000473405 IRS4O14654 1257 aaPredicted RBP24.28■■□□□ 1.48
CCDC88B-206ENST00000473405 EPS15P42566 896 aa24.28■■□□□ 1.48
CCDC88B-206ENST00000473405 KIAA2012Q0VF49 1180 aa24.28■■□□□ 1.48
CCDC88B-206ENST00000473405 WWC1Q8IX03 1113 aa24.28■■□□□ 1.48
CCDC88B-206ENST00000473405 CELF1Q92879 486 aaKnown RBP24.28■■□□□ 1.48
CCDC88B-206ENST00000473405 CLEC11AQ9Y240 323 aa24.28■■□□□ 1.48
CCDC88B-206ENST00000473405 LMOD1P29536 600 aaPredicted RBP24.27■■□□□ 1.48
CCDC88B-206ENST00000473405 CCDC30Q5VVM6 783 aa24.27■■□□□ 1.48
CCDC88B-206ENST00000473405 MAP1SQ66K74 1059 aaPredicted RBP24.27■■□□□ 1.48
CCDC88B-206ENST00000473405 ZBTB38Q8NAP3 1195 aaPredicted RBP24.27■■□□□ 1.48
CCDC88B-206ENST00000473405 MYD88Q99836 296 aa24.27■■□□□ 1.48
CCDC88B-206ENST00000473405 ZNRF3Q9ULT6 936 aa24.27■■□□□ 1.48
CCDC88B-206ENST00000473405 MYH3P11055 1940 aa24.27■■□□□ 1.48
CCDC88B-206ENST00000473405 ZNF316A6NFI3 1004 aaPredicted RBP24.26■■□□□ 1.47
CCDC88B-206ENST00000473405 CXCL9Q07325 125 aa24.26■■□□□ 1.47
CCDC88B-206ENST00000473405 MRS2Q9HD23 443 aa24.26■■□□□ 1.47
CCDC88B-206ENST00000473405 MKRN1Q9UHC7 482 aaKnown RBP24.25■■□□□ 1.47
CCDC88B-206ENST00000473405 CNTNAP1P78357 1384 aa24.25■■□□□ 1.47
CCDC88B-206ENST00000473405 TRPM7Q96QT4 1865 aa24.24■■□□□ 1.47
CCDC88B-206ENST00000473405 CNTROBQ8N137 903 aa24.24■■□□□ 1.47
CCDC88B-206ENST00000473405 CCDC191Q8NCU4 936 aa24.24■■□□□ 1.47
CCDC88B-206ENST00000473405 METTL22Q9BUU2 404 aaPredicted RBP24.24■■□□□ 1.47
CCDC88B-206ENST00000473405 PCCAP05165 728 aaPredicted RBP24.23■■□□□ 1.47
CCDC88B-206ENST00000473405 CHMP4AQ9BY43 222 aa24.23■■□□□ 1.47
CCDC88B-206ENST00000473405 GPRC5DQ9NZD1 345 aa24.23■■□□□ 1.47
CCDC88B-206ENST00000473405 IL16Q14005 1332 aa24.23■■□□□ 1.47
CCDC88B-206ENST00000473405 SPEF2Q9C093 1822 aa24.23■■□□□ 1.47
CCDC88B-206ENST00000473405 CACNA1FO60840 1977 aa24.23■■□□□ 1.47
CCDC88B-206ENST00000473405 TMEM88BA6NKF7 163 aa24.22■■□□□ 1.47
CCDC88B-206ENST00000473405 YDJCA8MPS7 323 aa24.22■■□□□ 1.47
CCDC88B-206ENST00000473405 DDX58O95786 925 aaKnown RBP24.22■■□□□ 1.47
CCDC88B-206ENST00000473405 NCBP3Q53F19 620 aaKnown RBP24.22■■□□□ 1.47
CCDC88B-206ENST00000473405 CWC25Q9NXE8 425 aaPredicted RBP24.22■■□□□ 1.47
CCDC88B-206ENST00000473405 ANP32CO43423 234 aa24.21■■□□□ 1.47
CCDC88B-206ENST00000473405 GMPSP49915 693 aaPredicted RBP24.21■■□□□ 1.47
CCDC88B-206ENST00000473405 USP50Q70EL3 339 aaPredicted RBP24.21■■□□□ 1.47
CCDC88B-206ENST00000473405 MAP3K2Q9Y2U5 619 aa24.21■■□□□ 1.47
CCDC88B-206ENST00000473405 SCN9AQ15858 1988 aa24.2■■□□□ 1.46
CCDC88B-206ENST00000473405 CDHR2Q9BYE9 1310 aa24.2■■□□□ 1.46
CCDC88B-206ENST00000473405 RAD17O75943 681 aa24.2■■□□□ 1.46
CCDC88B-206ENST00000473405 HSPA1AP0DMV8 641 aaKnown RBP24.2■■□□□ 1.46
CCDC88B-206ENST00000473405 HSPA1BP0DMV9 641 aaKnown RBP24.2■■□□□ 1.46
CCDC88B-206ENST00000473405 GPSM2P81274 684 aa24.2■■□□□ 1.46
CCDC88B-206ENST00000473405 TWISTNBQ3B726 338 aaPredicted RBP24.2■■□□□ 1.46
CCDC88B-206ENST00000473405 SEC31BQ9NQW1 1179 aa24.2■■□□□ 1.46
CCDC88B-206ENST00000473405 POLLQ9UGP5 575 aa24.2■■□□□ 1.46
CCDC88B-206ENST00000473405 NSFL1CQ9UNZ2 370 aaKnown RBP24.2■■□□□ 1.46
CCDC88B-206ENST00000473405 FANCIQ9NVI1 1328 aa24.19■■□□□ 1.46
CCDC88B-206ENST00000473405 PI4KAP2A4QPH2 592 aa24.19■■□□□ 1.46
CCDC88B-206ENST00000473405 IGKV5-2P06315 115 aa24.19■■□□□ 1.46
CCDC88B-206ENST00000473405 RPS8P62241 208 aaKnown RBP24.19■■□□□ 1.46
CCDC88B-206ENST00000473405 CIAPIN1Q6FI81 312 aa24.19■■□□□ 1.46
CCDC88B-206ENST00000473405 KSR2Q6VAB6 950 aa24.19■■□□□ 1.46
CCDC88B-206ENST00000473405 PI4KAP1Q8N8J0 262 aa24.19■■□□□ 1.46
CCDC88B-206ENST00000473405 JARID2Q92833 1246 aaPredicted RBP24.19■■□□□ 1.46
CCDC88B-206ENST00000473405 ADARB2Q9NS39 739 aaKnown RBP24.19■■□□□ 1.46
CCDC88B-206ENST00000473405 COL13A1Q5TAT6 717 aaPredicted RBP24.18■■□□□ 1.46
CCDC88B-206ENST00000473405 G2E3Q7L622 706 aa24.18■■□□□ 1.46
CCDC88B-206ENST00000473405 STK31Q9BXU1 1019 aa24.18■■□□□ 1.46
CCDC88B-206ENST00000473405 PSME4Q14997 1843 aa24.17■■□□□ 1.46
CCDC88B-206ENST00000473405 PDE8AO60658 829 aa24.17■■□□□ 1.46
CCDC88B-206ENST00000473405 HSP90B1P14625 803 aaKnown RBP24.17■■□□□ 1.46
CCDC88B-206ENST00000473405 WASHC4Q2M389 1173 aa24.17■■□□□ 1.46
CCDC88B-206ENST00000473405 THSD7BQ9C0I4 1608 aa24.17■■□□□ 1.46
CCDC88B-206ENST00000473405 FMR1Q06787 632 aaKnown RBP eCLIP24.16■■□□□ 1.46
CCDC88B-206ENST00000473405 TNIP1Q15025 636 aa24.16■■□□□ 1.46
CCDC88B-206ENST00000473405 CCDC152Q4G0S7 254 aa24.16■■□□□ 1.46
CCDC88B-206ENST00000473405 VEGFBP49765 207 aa24.15■■□□□ 1.46
CCDC88B-206ENST00000473405 TBC1D16Q8TBP0 767 aa24.15■■□□□ 1.46
CCDC88B-206ENST00000473405 GPR101Q96P66 508 aaPredicted RBP24.15■■□□□ 1.46
CCDC88B-206ENST00000473405 DBNDD1Q9H9R9 158 aa24.15■■□□□ 1.46
CCDC88B-206ENST00000473405 RASSF10A6NK89 507 aa24.14■■□□□ 1.45
CCDC88B-206ENST00000473405 C6orf229H3BNL8 230 aa24.14■■□□□ 1.45
CCDC88B-206ENST00000473405 CWF19L2Q2TBE0 894 aaKnown RBP24.14■■□□□ 1.45
CCDC88B-206ENST00000473405 CCDC85AQ96PX6 553 aaPredicted RBP24.14■■□□□ 1.45
CCDC88B-206ENST00000473405 PODXL2Q9NZ53 605 aa24.14■■□□□ 1.45
CCDC88B-206ENST00000473405 SHTN1A0MZ66 631 aa24.13■■□□□ 1.45
CCDC88B-206ENST00000473405 TRAF5O00463 557 aa24.13■■□□□ 1.45
CCDC88B-206ENST00000473405 RIMBP2O15034 1052 aa24.13■■□□□ 1.45
CCDC88B-206ENST00000473405 SLC4A2P04920 1241 aa24.13■■□□□ 1.45
CCDC88B-206ENST00000473405 RTL9Q8NET4 1388 aa24.13■■□□□ 1.45
CCDC88B-206ENST00000473405 NEURL1BA8MQ27 555 aa24.12■■□□□ 1.45
CCDC88B-206ENST00000473405 CTSWP56202 376 aa24.12■■□□□ 1.45
CCDC88B-206ENST00000473405 WDR63Q8IWG1 891 aa24.12■■□□□ 1.45
CCDC88B-206ENST00000473405 TRPM4Q8TD43 1214 aa24.12■■□□□ 1.45
CCDC88B-206ENST00000473405 EYA3Q99504 573 aa24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 130.4 ms