RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 ISCA1Q9BUE6 129 aa25.62■■□□□ 1.69
COL9A3-210ENST00000472880 RTFDC1Q9BY42 306 aaPredicted RBP25.62■■□□□ 1.69
COL9A3-210ENST00000472880 ATP5J2-PTCD1G3V325 749 aa25.61■■□□□ 1.69
COL9A3-210ENST00000472880 CNTROBQ8N137 903 aa25.61■■□□□ 1.69
COL9A3-210ENST00000472880 LRRC37AA6NMS7 1700 aa25.6■■□□□ 1.69
COL9A3-210ENST00000472880 TMC4Q7Z404 712 aa25.6■■□□□ 1.69
COL9A3-210ENST00000472880 EPS15P42566 896 aa25.59■■□□□ 1.69
COL9A3-210ENST00000472880 GOLGA2Q08379 1002 aa25.59■■□□□ 1.69
COL9A3-210ENST00000472880 FAM89AQ96GI7 184 aa25.59■■□□□ 1.69
COL9A3-210ENST00000472880 ZNRF3Q9ULT6 936 aa25.59■■□□□ 1.69
COL9A3-210ENST00000472880 TAF1P21675 1872 aa25.59■■□□□ 1.69
COL9A3-210ENST00000472880 PCNTO95613 3336 aa25.58■■□□□ 1.68
COL9A3-210ENST00000472880 ELL2O00472 640 aaPredicted RBP25.57■■□□□ 1.68
COL9A3-210ENST00000472880 KIAA2012Q0VF49 1180 aa25.57■■□□□ 1.68
COL9A3-210ENST00000472880 USP50Q70EL3 339 aaPredicted RBP25.57■■□□□ 1.68
COL9A3-210ENST00000472880 RIC3Q7Z5B4 369 aa25.57■■□□□ 1.68
COL9A3-210ENST00000472880 DUOX1Q9NRD9 1551 aa25.56■■□□□ 1.68
COL9A3-210ENST00000472880 RTL5Q5HYW3 569 aaPredicted RBP25.56■■□□□ 1.68
COL9A3-210ENST00000472880 CXCL9Q07325 125 aa25.55■■□□□ 1.68
COL9A3-210ENST00000472880 TRIM28Q13263 835 aaKnown RBP25.55■■□□□ 1.68
COL9A3-210ENST00000472880 SF3B3Q15393 1217 aaKnown RBP25.55■■□□□ 1.68
COL9A3-210ENST00000472880 IRS4O14654 1257 aaPredicted RBP25.54■■□□□ 1.68
COL9A3-210ENST00000472880 ZEB1P37275 1124 aaPredicted RBP25.54■■□□□ 1.68
COL9A3-210ENST00000472880 CIAPIN1Q6FI81 312 aa25.54■■□□□ 1.68
COL9A3-210ENST00000472880 PHAXQ9H814 394 aaKnown RBP25.54■■□□□ 1.68
COL9A3-210ENST00000472880 GPRC5DQ9NZD1 345 aa25.54■■□□□ 1.68
COL9A3-210ENST00000472880 TNS4Q8IZW8 715 aa25.53■■□□□ 1.68
COL9A3-210ENST00000472880 CHMP4AQ9BY43 222 aa25.53■■□□□ 1.68
COL9A3-210ENST00000472880 ADARB2Q9NS39 739 aaKnown RBP25.53■■□□□ 1.68
COL9A3-210ENST00000472880 VEGFBP49765 207 aa25.52■■□□□ 1.68
COL9A3-210ENST00000472880 GMPSP49915 693 aaPredicted RBP25.52■■□□□ 1.68
COL9A3-210ENST00000472880 C8orf58Q8NAV2 365 aa25.52■■□□□ 1.68
COL9A3-210ENST00000472880 CELF1Q92879 486 aaKnown RBP25.52■■□□□ 1.68
COL9A3-210ENST00000472880 CDHR2Q9BYE9 1310 aa25.52■■□□□ 1.68
COL9A3-210ENST00000472880 HSP90B1P14625 803 aaKnown RBP25.51■■□□□ 1.67
COL9A3-210ENST00000472880 TNIP1Q15025 636 aa25.51■■□□□ 1.67
COL9A3-210ENST00000472880 MYD88Q99836 296 aa25.51■■□□□ 1.67
COL9A3-210ENST00000472880 BCL2L13Q9BXK5 485 aa25.51■■□□□ 1.67
COL9A3-210ENST00000472880 ABT1Q9ULW3 272 aaKnown RBP25.51■■□□□ 1.67
COL9A3-210ENST00000472880 RASSF10A6NK89 507 aa25.5■■□□□ 1.67
COL9A3-210ENST00000472880 RAD17O75943 681 aa25.5■■□□□ 1.67
COL9A3-210ENST00000472880 DDX58O95786 925 aaKnown RBP25.5■■□□□ 1.67
COL9A3-210ENST00000472880 CCDC30Q5VVM6 783 aa25.5■■□□□ 1.67
COL9A3-210ENST00000472880 ZBTB38Q8NAP3 1195 aaPredicted RBP25.5■■□□□ 1.67
COL9A3-210ENST00000472880 NSFL1CQ9UNZ2 370 aaKnown RBP25.5■■□□□ 1.67
COL9A3-210ENST00000472880 COL4A1P02462 1669 aa25.49■■□□□ 1.67
COL9A3-210ENST00000472880 WASHC4Q2M389 1173 aa25.48■■□□□ 1.67
COL9A3-210ENST00000472880 DEFB115Q30KQ5 88 aa25.48■■□□□ 1.67
COL9A3-210ENST00000472880 CCDC191Q8NCU4 936 aa25.48■■□□□ 1.67
COL9A3-210ENST00000472880 YDJCA8MPS7 323 aa25.47■■□□□ 1.67
COL9A3-210ENST00000472880 C6orf229H3BNL8 230 aa25.47■■□□□ 1.67
COL9A3-210ENST00000472880 AIDAQ96BJ3 306 aa25.47■■□□□ 1.67
COL9A3-210ENST00000472880 GPSM2P81274 684 aa25.46■■□□□ 1.67
COL9A3-210ENST00000472880 CCDC184Q52MB2 194 aa25.46■■□□□ 1.67
COL9A3-210ENST00000472880 CWC25Q9NXE8 425 aaPredicted RBP25.46■■□□□ 1.67
COL9A3-210ENST00000472880 TRPM7Q96QT4 1865 aa25.46■■□□□ 1.67
COL9A3-210ENST00000472880 TRAF5O00463 557 aa25.45■■□□□ 1.66
COL9A3-210ENST00000472880 PCCAP05165 728 aaPredicted RBP25.45■■□□□ 1.66
COL9A3-210ENST00000472880 RPS8P62241 208 aaKnown RBP25.45■■□□□ 1.66
COL9A3-210ENST00000472880 FMR1Q06787 632 aaKnown RBP eCLIP25.45■■□□□ 1.66
COL9A3-210ENST00000472880 TSPYL6Q8N831 410 aa25.45■■□□□ 1.66
COL9A3-210ENST00000472880 TSR2Q969E8 191 aaKnown RBP25.45■■□□□ 1.66
COL9A3-210ENST00000472880 EYA3Q99504 573 aa25.45■■□□□ 1.66
COL9A3-210ENST00000472880 METTL22Q9BUU2 404 aaPredicted RBP25.45■■□□□ 1.66
COL9A3-210ENST00000472880 RIMBP2O15034 1052 aa25.44■■□□□ 1.66
COL9A3-210ENST00000472880 FOXN1O15353 648 aa25.44■■□□□ 1.66
COL9A3-210ENST00000472880 CCDC152Q4G0S7 254 aa25.44■■□□□ 1.66
COL9A3-210ENST00000472880 DBNDD1Q9H9R9 158 aa25.44■■□□□ 1.66
COL9A3-210ENST00000472880 CCDC27Q2M243 656 aa25.43■■□□□ 1.66
COL9A3-210ENST00000472880 STK31Q9BXU1 1019 aa25.43■■□□□ 1.66
COL9A3-210ENST00000472880 POLLQ9UGP5 575 aa25.43■■□□□ 1.66
COL9A3-210ENST00000472880 WDR33Q9C0J8 1336 aaKnown RBP25.42■■□□□ 1.66
COL9A3-210ENST00000472880 PDE8AO60658 829 aa25.42■■□□□ 1.66
COL9A3-210ENST00000472880 PAXIP1Q6ZW49 1069 aaPredicted RBP25.42■■□□□ 1.66
COL9A3-210ENST00000472880 SEC31BQ9NQW1 1179 aa25.42■■□□□ 1.66
COL9A3-210ENST00000472880 CNOT7Q9UIV1 285 aaKnown RBP25.42■■□□□ 1.66
COL9A3-210ENST00000472880 MAP3K2Q9Y2U5 619 aa25.42■■□□□ 1.66
COL9A3-210ENST00000472880 H7C1D1 291 aa25.41■■□□□ 1.66
COL9A3-210ENST00000472880 CAPN15O75808 1086 aa25.41■■□□□ 1.66
COL9A3-210ENST00000472880 WWC1Q8IX03 1113 aa25.41■■□□□ 1.66
COL9A3-210ENST00000472880 MICALL2Q8IY33 904 aa25.41■■□□□ 1.66
COL9A3-210ENST00000472880 TBC1D16Q8TBP0 767 aa25.41■■□□□ 1.66
COL9A3-210ENST00000472880 PSMD14O00487 310 aa25.4■■□□□ 1.66
COL9A3-210ENST00000472880 ECE2O60344 883 aa25.4■■□□□ 1.66
COL9A3-210ENST00000472880 CTCFP49711 727 aaPredicted RBP25.4■■□□□ 1.66
COL9A3-210ENST00000472880 TRPM4Q8TD43 1214 aa25.4■■□□□ 1.66
COL9A3-210ENST00000472880 ZC3H15Q8WU90 426 aaKnown RBP25.4■■□□□ 1.66
COL9A3-210ENST00000472880 JARID2Q92833 1246 aaPredicted RBP25.4■■□□□ 1.66
COL9A3-210ENST00000472880 ZBTB12Q9Y330 459 aaPredicted RBP25.4■■□□□ 1.66
COL9A3-210ENST00000472880 THSD7BQ9C0I4 1608 aa25.4■■□□□ 1.66
COL9A3-210ENST00000472880 UFL1O94874 794 aa25.39■■□□□ 1.66
COL9A3-210ENST00000472880 ECE1P42892 770 aa25.39■■□□□ 1.66
COL9A3-210ENST00000472880 TWISTNBQ3B726 338 aaPredicted RBP25.39■■□□□ 1.66
COL9A3-210ENST00000472880 CST9Q5W186 159 aa25.39■■□□□ 1.66
COL9A3-210ENST00000472880 KSR2Q6VAB6 950 aa25.39■■□□□ 1.66
COL9A3-210ENST00000472880 DPF2Q92785 391 aa25.39■■□□□ 1.66
COL9A3-210ENST00000472880 GPR101Q96P66 508 aaPredicted RBP25.39■■□□□ 1.66
COL9A3-210ENST00000472880 CCDC85AQ96PX6 553 aaPredicted RBP25.39■■□□□ 1.66
COL9A3-210ENST00000472880 GLIS2Q9BZE0 524 aaPredicted RBP25.39■■□□□ 1.66
COL9A3-210ENST00000472880 MRS2Q9HD23 443 aa25.39■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms