RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 ATP5J2-PTCD1G3V325 749 aa27.37■■□□□ 1.97
COL9A3-207ENST00000467819 TRPM7Q96QT4 1865 aa27.37■■□□□ 1.97
COL9A3-207ENST00000467819 VPS33BQ9H267 617 aa27.37■■□□□ 1.97
COL9A3-207ENST00000467819 HYPKQ9NX55 129 aa27.37■■□□□ 1.97
COL9A3-207ENST00000467819 APAF1O14727 1248 aa27.36■■□□□ 1.97
COL9A3-207ENST00000467819 FAM89AQ96GI7 184 aa27.36■■□□□ 1.97
COL9A3-207ENST00000467819 ISCA1Q9BUE6 129 aa27.36■■□□□ 1.97
COL9A3-207ENST00000467819 VEGFBP49765 207 aa27.35■■□□□ 1.97
COL9A3-207ENST00000467819 ZNRF3Q9ULT6 936 aa27.35■■□□□ 1.97
COL9A3-207ENST00000467819 DUOX1Q9NRD9 1551 aa27.35■■□□□ 1.97
COL9A3-207ENST00000467819 ZNF853P0CG23 659 aa27.34■■□□□ 1.97
COL9A3-207ENST00000467819 CXCL9Q07325 125 aa27.34■■□□□ 1.97
COL9A3-207ENST00000467819 RTL5Q5HYW3 569 aaPredicted RBP27.34■■□□□ 1.97
COL9A3-207ENST00000467819 CAPN15O75808 1086 aa27.33■■□□□ 1.97
COL9A3-207ENST00000467819 KIAA2012Q0VF49 1180 aa27.33■■□□□ 1.97
COL9A3-207ENST00000467819 USP50Q70EL3 339 aaPredicted RBP27.33■■□□□ 1.97
COL9A3-207ENST00000467819 ELL2O00472 640 aaPredicted RBP27.32■■□□□ 1.96
COL9A3-207ENST00000467819 IFT57Q9NWB7 429 aa27.32■■□□□ 1.96
COL9A3-207ENST00000467819 GPRC5DQ9NZD1 345 aa27.32■■□□□ 1.96
COL9A3-207ENST00000467819 COL4A1P02462 1669 aa27.32■■□□□ 1.96
COL9A3-207ENST00000467819 FMR1Q06787 632 aaKnown RBP eCLIP27.31■■□□□ 1.96
COL9A3-207ENST00000467819 TMC4Q7Z404 712 aa27.31■■□□□ 1.96
COL9A3-207ENST00000467819 ABT1Q9ULW3 272 aaKnown RBP27.31■■□□□ 1.96
COL9A3-207ENST00000467819 GMPSP49915 693 aaPredicted RBP27.3■■□□□ 1.96
COL9A3-207ENST00000467819 GNAI1P63096 354 aa27.3■■□□□ 1.96
COL9A3-207ENST00000467819 CALD1Q05682 793 aaKnown RBP27.3■■□□□ 1.96
COL9A3-207ENST00000467819 CIAPIN1Q6FI81 312 aa27.3■■□□□ 1.96
COL9A3-207ENST00000467819 RIC3Q7Z5B4 369 aa27.3■■□□□ 1.96
COL9A3-207ENST00000467819 ADARB2Q9NS39 739 aaKnown RBP27.3■■□□□ 1.96
COL9A3-207ENST00000467819 RASSF10A6NK89 507 aa27.29■■□□□ 1.96
COL9A3-207ENST00000467819 FOXN1O15353 648 aa27.29■■□□□ 1.96
COL9A3-207ENST00000467819 RAD17O75943 681 aa27.29■■□□□ 1.96
COL9A3-207ENST00000467819 GOLGA2Q08379 1002 aa27.29■■□□□ 1.96
COL9A3-207ENST00000467819 DEFB115Q30KQ5 88 aa27.29■■□□□ 1.96
COL9A3-207ENST00000467819 CELF1Q92879 486 aaKnown RBP27.29■■□□□ 1.96
COL9A3-207ENST00000467819 PHAXQ9H814 394 aaKnown RBP27.29■■□□□ 1.96
COL9A3-207ENST00000467819 SF3B3Q15393 1217 aaKnown RBP27.28■■□□□ 1.96
COL9A3-207ENST00000467819 TRAF5O00463 557 aa27.27■■□□□ 1.96
COL9A3-207ENST00000467819 IRS4O14654 1257 aaPredicted RBP27.27■■□□□ 1.96
COL9A3-207ENST00000467819 BCL2L13Q9BXK5 485 aa27.27■■□□□ 1.96
COL9A3-207ENST00000467819 TRIM28Q13263 835 aaKnown RBP27.26■■□□□ 1.95
COL9A3-207ENST00000467819 AIDAQ96BJ3 306 aa27.26■■□□□ 1.95
COL9A3-207ENST00000467819 YDJCA8MPS7 323 aa27.25■■□□□ 1.95
COL9A3-207ENST00000467819 TNIP1Q15025 636 aa27.25■■□□□ 1.95
COL9A3-207ENST00000467819 C8orf58Q8NAV2 365 aa27.25■■□□□ 1.95
COL9A3-207ENST00000467819 NSFL1CQ9UNZ2 370 aaKnown RBP27.25■■□□□ 1.95
COL9A3-207ENST00000467819 MYD88Q99836 296 aa27.24■■□□□ 1.95
COL9A3-207ENST00000467819 CDHR2Q9BYE9 1310 aa27.23■■□□□ 1.95
COL9A3-207ENST00000467819 WDR33Q9C0J8 1336 aaKnown RBP27.23■■□□□ 1.95
COL9A3-207ENST00000467819 WASHC4Q2M389 1173 aa27.23■■□□□ 1.95
COL9A3-207ENST00000467819 C6orf229H3BNL8 230 aa27.22■■□□□ 1.95
COL9A3-207ENST00000467819 RIMBP2O15034 1052 aa27.22■■□□□ 1.95
COL9A3-207ENST00000467819 GPSM2P81274 684 aa27.22■■□□□ 1.95
COL9A3-207ENST00000467819 PAXIP1Q6ZW49 1069 aaPredicted RBP27.22■■□□□ 1.95
COL9A3-207ENST00000467819 ZBTB38Q8NAP3 1195 aaPredicted RBP27.22■■□□□ 1.95
COL9A3-207ENST00000467819 DBNDD1Q9H9R9 158 aa27.21■■□□□ 1.95
COL9A3-207ENST00000467819 WBP1LQ9NX94 342 aa27.21■■□□□ 1.95
COL9A3-207ENST00000467819 THSD7BQ9C0I4 1608 aa27.2■■□□□ 1.95
COL9A3-207ENST00000467819 SHTN1A0MZ66 631 aa27.2■■□□□ 1.94
COL9A3-207ENST00000467819 CTCFP49711 727 aaPredicted RBP27.2■■□□□ 1.94
COL9A3-207ENST00000467819 CST9Q5W186 159 aa27.2■■□□□ 1.94
COL9A3-207ENST00000467819 TRPM4Q8TD43 1214 aa27.2■■□□□ 1.94
COL9A3-207ENST00000467819 POLLQ9UGP5 575 aa27.2■■□□□ 1.94
COL9A3-207ENST00000467819 RPS8P62241 208 aaKnown RBP27.19■■□□□ 1.94
COL9A3-207ENST00000467819 GRM1Q13255 1194 aa27.19■■□□□ 1.94
COL9A3-207ENST00000467819 CCDC184Q52MB2 194 aa27.19■■□□□ 1.94
COL9A3-207ENST00000467819 CCDC30Q5VVM6 783 aa27.19■■□□□ 1.94
COL9A3-207ENST00000467819 JARID2Q92833 1246 aaPredicted RBP27.19■■□□□ 1.94
COL9A3-207ENST00000467819 GPR101Q96P66 508 aaPredicted RBP27.19■■□□□ 1.94
COL9A3-207ENST00000467819 GLIS2Q9BZE0 524 aaPredicted RBP27.19■■□□□ 1.94
COL9A3-207ENST00000467819 SEC31BQ9NQW1 1179 aa27.19■■□□□ 1.94
COL9A3-207ENST00000467819 CNOT7Q9UIV1 285 aaKnown RBP27.19■■□□□ 1.94
COL9A3-207ENST00000467819 TSPYL6Q8N831 410 aa27.18■■□□□ 1.94
COL9A3-207ENST00000467819 CCDC191Q8NCU4 936 aa27.18■■□□□ 1.94
COL9A3-207ENST00000467819 ZBTB12Q9Y330 459 aaPredicted RBP27.18■■□□□ 1.94
COL9A3-207ENST00000467819 MYH3P11055 1940 aa27.18■■□□□ 1.94
COL9A3-207ENST00000467819 POLR2AP24928 1970 aaKnown RBP27.17■■□□□ 1.94
COL9A3-207ENST00000467819 SCN9AQ15858 1988 aa27.17■■□□□ 1.94
COL9A3-207ENST00000467819 PSMD14O00487 310 aa27.17■■□□□ 1.94
COL9A3-207ENST00000467819 DDX58O95786 925 aaKnown RBP27.17■■□□□ 1.94
COL9A3-207ENST00000467819 HSP90B1P14625 803 aaKnown RBP27.17■■□□□ 1.94
COL9A3-207ENST00000467819 HIRAP54198 1017 aaPredicted RBP27.17■■□□□ 1.94
COL9A3-207ENST00000467819 CYP4F22Q6NT55 531 aa27.17■■□□□ 1.94
COL9A3-207ENST00000467819 MICALL2Q8IY33 904 aa27.17■■□□□ 1.94
COL9A3-207ENST00000467819 TSR2Q969E8 191 aaKnown RBP27.17■■□□□ 1.94
COL9A3-207ENST00000467819 CAPNS2Q96L46 248 aa27.17■■□□□ 1.94
COL9A3-207ENST00000467819 PRDM10Q9NQV6 1147 aa27.17■■□□□ 1.94
COL9A3-207ENST00000467819 CWC25Q9NXE8 425 aaPredicted RBP27.17■■□□□ 1.94
COL9A3-207ENST00000467819 SPEF2Q9C093 1822 aa27.16■■□□□ 1.94
COL9A3-207ENST00000467819 H7C1D1 291 aa27.16■■□□□ 1.94
COL9A3-207ENST00000467819 PCCAP05165 728 aaPredicted RBP27.16■■□□□ 1.94
COL9A3-207ENST00000467819 DOK7Q18PE1 504 aa27.16■■□□□ 1.94
COL9A3-207ENST00000467819 CCDC85AQ96PX6 553 aaPredicted RBP27.16■■□□□ 1.94
COL9A3-207ENST00000467819 EYA3Q99504 573 aa27.16■■□□□ 1.94
COL9A3-207ENST00000467819 METTL22Q9BUU2 404 aaPredicted RBP27.16■■□□□ 1.94
COL9A3-207ENST00000467819 TLL2Q9Y6L7 1015 aa27.16■■□□□ 1.94
COL9A3-207ENST00000467819 ECE2O60344 883 aa27.15■■□□□ 1.94
COL9A3-207ENST00000467819 CELF2O95319 508 aaKnown RBP27.15■■□□□ 1.94
COL9A3-207ENST00000467819 LBX1P52954 281 aa27.15■■□□□ 1.94
COL9A3-207ENST00000467819 MAP2K1Q02750 393 aaPredicted RBP27.15■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms