RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 RTKN2Q8IZC4 609 aa16.65■□□□□ 0.26
COL28A1-206ENST00000465339 DICER1Q9UPY3 1922 aaKnown RBP16.64■□□□□ 0.26
COL28A1-206ENST00000465339 IRS4O14654 1257 aaPredicted RBP16.64■□□□□ 0.25
COL28A1-206ENST00000465339 PCCAP05165 728 aaPredicted RBP16.64■□□□□ 0.25
COL28A1-206ENST00000465339 DDX46Q7L014 1031 aaKnown RBP16.64■□□□□ 0.25
COL28A1-206ENST00000465339 ZNF428Q96B54 188 aa16.64■□□□□ 0.25
COL28A1-206ENST00000465339 CDCA7LQ96GN5 454 aa16.64■□□□□ 0.25
COL28A1-206ENST00000465339 TAOK3Q9H2K8 898 aa16.64■□□□□ 0.25
COL28A1-206ENST00000465339 ZC3H4Q9UPT8 1303 aaKnown RBP16.64■□□□□ 0.25
COL28A1-206ENST00000465339 BBOX1O75936 387 aa16.63■□□□□ 0.25
COL28A1-206ENST00000465339 SF3B3Q15393 1217 aaKnown RBP16.63■□□□□ 0.25
COL28A1-206ENST00000465339 DNAAF4Q8WXU2 420 aa16.63■□□□□ 0.25
COL28A1-206ENST00000465339 TMX4Q9H1E5 349 aaPredicted RBP16.63■□□□□ 0.25
COL28A1-206ENST00000465339 GPBP1L1Q9HC44 474 aaPredicted RBP16.63■□□□□ 0.25
COL28A1-206ENST00000465339 IGKV5-2P06315 115 aa16.62■□□□□ 0.25
COL28A1-206ENST00000465339 PRELPP51888 382 aa16.62■□□□□ 0.25
COL28A1-206ENST00000465339 RTL5Q5HYW3 569 aaPredicted RBP16.62■□□□□ 0.25
COL28A1-206ENST00000465339 NEURL1BA8MQ27 555 aa16.61■□□□□ 0.25
COL28A1-206ENST00000465339 PPEF1O14829 653 aaPredicted RBP16.61■□□□□ 0.25
COL28A1-206ENST00000465339 FKBP4Q02790 459 aaKnown RBP eCLIP16.61■□□□□ 0.25
COL28A1-206ENST00000465339 LINS1Q8NG48 757 aa16.61■□□□□ 0.25
COL28A1-206ENST00000465339 ABCC4O15439 1325 aa16.61■□□□□ 0.25
COL28A1-206ENST00000465339 PDE8AO60658 829 aa16.6■□□□□ 0.25
COL28A1-206ENST00000465339 CT47B1P0C2W7 299 aaPredicted RBP16.6■□□□□ 0.25
COL28A1-206ENST00000465339 CWF19L2Q2TBE0 894 aaKnown RBP16.6■□□□□ 0.25
COL28A1-206ENST00000465339 TMC4Q7Z404 712 aa16.6■□□□□ 0.25
COL28A1-206ENST00000465339 ZNF526Q8TF50 670 aaPredicted RBP16.6■□□□□ 0.25
COL28A1-206ENST00000465339 PSMD1Q99460 953 aa16.6■□□□□ 0.25
COL28A1-206ENST00000465339 ATP6V0A2Q9Y487 856 aa16.6■□□□□ 0.25
COL28A1-206ENST00000465339 CDHR2Q9BYE9 1310 aa16.6■□□□□ 0.25
COL28A1-206ENST00000465339 TAF1P21675 1872 aa16.59■□□□□ 0.25
COL28A1-206ENST00000465339 H7C1W4 665 aa16.59■□□□□ 0.25
COL28A1-206ENST00000465339 GRAPQ13588 217 aa16.59■□□□□ 0.25
COL28A1-206ENST00000465339 OLFM4Q6UX06 510 aa16.59■□□□□ 0.25
COL28A1-206ENST00000465339 SP8Q8IXZ3 490 aa16.59■□□□□ 0.25
COL28A1-206ENST00000465339 GRAPLQ8TC17 118 aaPredicted RBP16.59■□□□□ 0.25
COL28A1-206ENST00000465339 KDM2BQ8NHM5 1336 aa16.59■□□□□ 0.25
COL28A1-206ENST00000465339 GCKRQ14397 625 aa16.58■□□□□ 0.24
COL28A1-206ENST00000465339 ALDH1L2Q3SY69 923 aa16.58■□□□□ 0.24
COL28A1-206ENST00000465339 MRPL50Q8N5N7 158 aaKnown RBP16.58■□□□□ 0.24
COL28A1-206ENST00000465339 TIAM2Q8IVF5 1701 aa16.58■□□□□ 0.24
COL28A1-206ENST00000465339 MYH3P11055 1940 aa16.58■□□□□ 0.24
COL28A1-206ENST00000465339 F6X3S4 739 aa16.57■□□□□ 0.24
COL28A1-206ENST00000465339 HNRNPUQ00839 825 aaKnown RBP eCLIP16.57■□□□□ 0.24
COL28A1-206ENST00000465339 CCDC152Q4G0S7 254 aa16.57■□□□□ 0.24
COL28A1-206ENST00000465339 SSH1Q8WYL5 1049 aa16.57■□□□□ 0.24
COL28A1-206ENST00000465339 JARID2Q92833 1246 aaPredicted RBP16.57■□□□□ 0.24
COL28A1-206ENST00000465339 SNED1Q8TER0 1413 aa16.56■□□□□ 0.24
COL28A1-206ENST00000465339 PTPRCP08575 1304 aa16.56■□□□□ 0.24
COL28A1-206ENST00000465339 GLTPD2A6NH11 291 aa16.56■□□□□ 0.24
COL28A1-206ENST00000465339 BEND3Q5T5X7 828 aa16.56■□□□□ 0.24
COL28A1-206ENST00000465339 DPY19L2Q6NUT2 758 aa16.56■□□□□ 0.24
COL28A1-206ENST00000465339 UBE3BQ7Z3V4 1068 aa16.56■□□□□ 0.24
COL28A1-206ENST00000465339 IARSP41252 1262 aaKnown RBP16.55■□□□□ 0.24
COL28A1-206ENST00000465339 RPS8P62241 208 aaKnown RBP16.55■□□□□ 0.24
COL28A1-206ENST00000465339 SUPT20HQ8NEM7 779 aa16.55■□□□□ 0.24
COL28A1-206ENST00000465339 VPS33BQ9H267 617 aa16.55■□□□□ 0.24
COL28A1-206ENST00000465339 ZNF277Q9NRM2 450 aaPredicted RBP16.55■□□□□ 0.24
COL28A1-206ENST00000465339 ALDH1L1O75891 902 aa16.54■□□□□ 0.24
COL28A1-206ENST00000465339 MPNDQ8N594 471 aa16.54■□□□□ 0.24
COL28A1-206ENST00000465339 CELF1Q92879 486 aaKnown RBP16.54■□□□□ 0.24
COL28A1-206ENST00000465339 CTSWP56202 376 aa16.53■□□□□ 0.24
COL28A1-206ENST00000465339 SLC4A10Q6U841 1118 aa16.53■□□□□ 0.24
COL28A1-206ENST00000465339 DPP8Q6V1X1 898 aaPredicted RBP16.53■□□□□ 0.24
COL28A1-206ENST00000465339 TTLL11Q8NHH1 800 aa16.53■□□□□ 0.24
COL28A1-206ENST00000465339 JDP2Q8WYK2 163 aa16.53■□□□□ 0.24
COL28A1-206ENST00000465339 PLA2G12BQ9BX93 195 aa16.53■□□□□ 0.24
COL28A1-206ENST00000465339 RTFDC1Q9BY42 306 aaPredicted RBP16.53■□□□□ 0.24
COL28A1-206ENST00000465339 SMC4Q9NTJ3 1288 aa16.53■□□□□ 0.24
COL28A1-206ENST00000465339 KIF3CO14782 793 aa16.52■□□□□ 0.24
COL28A1-206ENST00000465339 BRPF1P55201 1214 aaPredicted RBP16.52■□□□□ 0.24
COL28A1-206ENST00000465339 CASP7P55210 303 aa16.52■□□□□ 0.24
COL28A1-206ENST00000465339 SRCIN1Q9C0H9 1055 aa16.52■□□□□ 0.24
COL28A1-206ENST00000465339 SEC31BQ9NQW1 1179 aa16.52■□□□□ 0.24
COL28A1-206ENST00000465339 LRRC37AA6NMS7 1700 aa16.52■□□□□ 0.24
COL28A1-206ENST00000465339 CDC5LQ99459 802 aaKnown RBP16.51■□□□□ 0.23
COL28A1-206ENST00000465339 BCL2L13Q9BXK5 485 aa16.51■□□□□ 0.23
COL28A1-206ENST00000465339 RRAGCQ9HB90 399 aa16.51■□□□□ 0.23
COL28A1-206ENST00000465339 NMRK2Q9NPI5 230 aa16.51■□□□□ 0.23
COL28A1-206ENST00000465339 C9orf78Q9NZ63 289 aaPredicted RBP16.51■□□□□ 0.23
COL28A1-206ENST00000465339 RTL9Q8NET4 1388 aa16.51■□□□□ 0.23
COL28A1-206ENST00000465339 GRM8O00222 908 aa16.5■□□□□ 0.23
COL28A1-206ENST00000465339 C1QTNF8P60827 252 aa16.5■□□□□ 0.23
COL28A1-206ENST00000465339 ANKRD18AQ8IVF6 992 aa16.5■□□□□ 0.23
COL28A1-206ENST00000465339 LARGE2Q8N3Y3 721 aa16.5■□□□□ 0.23
COL28A1-206ENST00000465339 CCDC85AQ96PX6 553 aaPredicted RBP16.5■□□□□ 0.23
COL28A1-206ENST00000465339 ZBED9Q6R2W3 1325 aa16.49■□□□□ 0.23
COL28A1-206ENST00000465339 FZD9O00144 591 aa16.49■□□□□ 0.23
COL28A1-206ENST00000465339 CSF1RP07333 972 aa16.49■□□□□ 0.23
COL28A1-206ENST00000465339 VEGFAP15692 232 aaPredicted RBP16.49■□□□□ 0.23
COL28A1-206ENST00000465339 RARSP54136 660 aaKnown RBP16.49■□□□□ 0.23
COL28A1-206ENST00000465339 SLC51AQ86UW1 340 aa16.49■□□□□ 0.23
COL28A1-206ENST00000465339 NSFL1CQ9UNZ2 370 aaKnown RBP16.49■□□□□ 0.23
COL28A1-206ENST00000465339 WDR90Q96KV7 1748 aa16.48■□□□□ 0.23
COL28A1-206ENST00000465339 PPIP5K2O43314 1243 aa16.48■□□□□ 0.23
COL28A1-206ENST00000465339 TOMM70O94826 608 aa16.48■□□□□ 0.23
COL28A1-206ENST00000465339 C16orf71Q8IYS4 520 aaPredicted RBP16.48■□□□□ 0.23
COL28A1-206ENST00000465339 GREM2Q9H772 168 aa16.48■□□□□ 0.23
COL28A1-206ENST00000465339 COL4A1P02462 1669 aa16.47■□□□□ 0.23
COL28A1-206ENST00000465339 DDNO94850 711 aaPredicted RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms