RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 SPAG1Q07617 926 aa21.83■■□□□ 1.09
CCDC88B-204ENST00000463837 DMRT2Q9Y5R5 561 aa21.83■■□□□ 1.09
CCDC88B-204ENST00000463837 SLC5A1P13866 664 aa21.83■■□□□ 1.09
CCDC88B-204ENST00000463837 ATL3Q6DD88 541 aa21.83■■□□□ 1.09
CCDC88B-204ENST00000463837 ZFP91Q96JP5 570 aaPredicted RBP21.83■■□□□ 1.09
CCDC88B-204ENST00000463837 RMND1Q9NWS8 449 aa21.83■■□□□ 1.09
CCDC88B-204ENST00000463837 FANCAO15360 1455 aa21.83■■□□□ 1.09
CCDC88B-204ENST00000463837 RAD50Q92878 1312 aa21.83■■□□□ 1.08
CCDC88B-204ENST00000463837 AMPD3Q01432 767 aa21.83■■□□□ 1.08
CCDC88B-204ENST00000463837 CATIPQ7Z7H3 387 aa21.83■■□□□ 1.08
CCDC88B-204ENST00000463837 CEP112Q8N8E3 955 aa21.83■■□□□ 1.08
CCDC88B-204ENST00000463837 DNAI1Q9UI46 699 aa21.83■■□□□ 1.08
CCDC88B-204ENST00000463837 DENND4BO75064 1496 aaPredicted RBP21.83■■□□□ 1.08
CCDC88B-204ENST00000463837 ZGPATQ8N5A5 531 aaKnown RBP21.83■■□□□ 1.08
CCDC88B-204ENST00000463837 ABCF2Q9UG63 623 aa21.82■■□□□ 1.08
CCDC88B-204ENST00000463837 TMEM266Q2M3C6 531 aa21.82■■□□□ 1.08
CCDC88B-204ENST00000463837 C16orf71Q8IYS4 520 aaPredicted RBP21.82■■□□□ 1.08
CCDC88B-204ENST00000463837 CCDC113Q9H0I3 377 aa21.82■■□□□ 1.08
CCDC88B-204ENST00000463837 CTAGE15A4D2H0 777 aa21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 CTAGE8P0CG41 777 aa21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 CETN2P41208 172 aa21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 TMEM67Q5HYA8 995 aa21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 CTAGE6Q86UF2 777 aa21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 CTAGE4Q8IX94 777 aa21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 TEX14Q8IWB6 1497 aa21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 CCDC194A0A1B0GVG4 234 aa21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 MINDY4BA8MYZ0 360 aa21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 AK2P54819 239 aa21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 MAP2K1Q02750 393 aaPredicted RBP21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 MPRIPQ6WCQ1 1025 aa21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 AOPEPQ8N6M6 819 aa21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 DYDC1Q8WWB3 177 aa21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 GCOM1H8Y6P7 765 aaPredicted RBP21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 ZPR1O75312 459 aa21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 TUBBP07437 444 aa21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 MYZAPP0CAP1 466 aa21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 BICDL1Q6ZP65 573 aa21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 DNMT1P26358 1616 aaKnown RBP21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 TTC21AQ8NDW8 1320 aa21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 IFFO1Q0D2I5 559 aa21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 USHBP1Q8N6Y0 703 aa21.81■■□□□ 1.08
CCDC88B-204ENST00000463837 PZPP20742 1482 aa21.8■■□□□ 1.08
CCDC88B-204ENST00000463837 EZRP15311 586 aaKnown RBP21.8■■□□□ 1.08
CCDC88B-204ENST00000463837 RBSNQ9H1K0 784 aa21.8■■□□□ 1.08
CCDC88B-204ENST00000463837 CHMLP26374 656 aa21.8■■□□□ 1.08
CCDC88B-204ENST00000463837 MTIF2P46199 727 aaKnown RBP21.8■■□□□ 1.08
CCDC88B-204ENST00000463837 CAVIN4Q5BKX8 364 aa21.8■■□□□ 1.08
CCDC88B-204ENST00000463837 NOL12Q9UGY1 213 aaKnown RBP eCLIP21.8■■□□□ 1.08
CCDC88B-204ENST00000463837 V9GYY5 206 aaPredicted RBP21.8■■□□□ 1.08
CCDC88B-204ENST00000463837 NLRP5P59047 1200 aa21.8■■□□□ 1.08
CCDC88B-204ENST00000463837 MCMDC2Q4G0Z9 681 aa21.8■■□□□ 1.08
CCDC88B-204ENST00000463837 ANKRD18BA2A2Z9 1011 aa21.79■■□□□ 1.08
CCDC88B-204ENST00000463837 ZBTB7BO15156 539 aaPredicted RBP21.79■■□□□ 1.08
CCDC88B-204ENST00000463837 SYT1P21579 422 aa21.79■■□□□ 1.08
CCDC88B-204ENST00000463837 GOLGA1Q92805 767 aa21.79■■□□□ 1.08
CCDC88B-204ENST00000463837 AMOTL2Q9Y2J4 779 aa21.79■■□□□ 1.08
CCDC88B-204ENST00000463837 BCCIPQ9P287 314 aaKnown RBP eCLIP21.79■■□□□ 1.08
CCDC88B-204ENST00000463837 PLCH2O75038 1416 aa21.79■■□□□ 1.08
CCDC88B-204ENST00000463837 PTGS1P23219 599 aa21.78■■□□□ 1.08
CCDC88B-204ENST00000463837 RTL1A6NKG5 1358 aa21.78■■□□□ 1.08
CCDC88B-204ENST00000463837 CCDC178Q5BJE1 867 aa21.78■■□□□ 1.08
CCDC88B-204ENST00000463837 N4BP3O15049 544 aa21.78■■□□□ 1.08
CCDC88B-204ENST00000463837 LIG1P18858 919 aa21.78■■□□□ 1.08
CCDC88B-204ENST00000463837 TCEANC2Q96MN5 208 aa21.78■■□□□ 1.08
CCDC88B-204ENST00000463837 PTCD1O75127 700 aaKnown RBP21.77■■□□□ 1.08
CCDC88B-204ENST00000463837 TDRD12Q587J7 1177 aaKnown RBP21.77■■□□□ 1.08
CCDC88B-204ENST00000463837 GPATCH11Q8N954 259 aa21.77■■□□□ 1.08
CCDC88B-204ENST00000463837 CWC25Q9NXE8 425 aaPredicted RBP21.77■■□□□ 1.08
CCDC88B-204ENST00000463837 UNC13AQ9UPW8 1703 aa21.77■■□□□ 1.08
CCDC88B-204ENST00000463837 KLF18A0A0U1RQI7 1052 aa21.77■■□□□ 1.08
CCDC88B-204ENST00000463837 USP5P45974 858 aa21.77■■□□□ 1.08
CCDC88B-204ENST00000463837 SMC1AQ14683 1233 aaKnown RBP21.77■■□□□ 1.08
CCDC88B-204ENST00000463837 CCDC175P0C221 793 aa21.77■■□□□ 1.08
CCDC88B-204ENST00000463837 Q6ZUG5 572 aa21.77■■□□□ 1.08
CCDC88B-204ENST00000463837 RAB11FIP4Q86YS3 637 aa21.77■■□□□ 1.08
CCDC88B-204ENST00000463837 IPO4Q8TEX9 1081 aaKnown RBP21.77■■□□□ 1.08
CCDC88B-204ENST00000463837 WDR62O43379 1518 aa21.77■■□□□ 1.08
CCDC88B-204ENST00000463837 AOX1Q06278 1338 aa21.77■■□□□ 1.08
CCDC88B-204ENST00000463837 POTEJP0CG39 1038 aa21.77■■□□□ 1.08
CCDC88B-204ENST00000463837 TCP11L1Q9NUJ3 509 aa21.77■■□□□ 1.08
CCDC88B-204ENST00000463837 KIF5BP33176 963 aa21.76■■□□□ 1.07
CCDC88B-204ENST00000463837 CYLC1P35663 651 aaPredicted RBP21.76■■□□□ 1.07
CCDC88B-204ENST00000463837 RUFY3Q7L099 469 aa21.76■■□□□ 1.07
CCDC88B-204ENST00000463837 LRRC27Q9C0I9 530 aa21.76■■□□□ 1.07
CCDC88B-204ENST00000463837 ATP10BO94823 1461 aa21.76■■□□□ 1.07
CCDC88B-204ENST00000463837 GOLGA6L10A0A0M3HER8 536 aa21.76■■□□□ 1.07
CCDC88B-204ENST00000463837 TMTC2Q8N394 836 aa21.76■■□□□ 1.07
CCDC88B-204ENST00000463837 HSF2BPO75031 334 aa21.76■■□□□ 1.07
CCDC88B-204ENST00000463837 IGSF3O75054 1194 aa21.76■■□□□ 1.07
CCDC88B-204ENST00000463837 SYCP2Q9BX26 1530 aa21.76■■□□□ 1.07
CCDC88B-204ENST00000463837 TAOK3Q9H2K8 898 aa21.75■■□□□ 1.07
CCDC88B-204ENST00000463837 RANBP6O60518 1105 aaKnown RBP21.75■■□□□ 1.07
CCDC88B-204ENST00000463837 ZNF76P36508 570 aa21.75■■□□□ 1.07
CCDC88B-204ENST00000463837 CARD14Q9BXL6 1004 aa21.75■■□□□ 1.07
CCDC88B-204ENST00000463837 CCDC144CPQ8IYA2 1237 aa21.75■■□□□ 1.07
CCDC88B-204ENST00000463837 CALML4Q96GE6 196 aa21.75■■□□□ 1.07
CCDC88B-204ENST00000463837 ERO1AQ96HE7 468 aa21.75■■□□□ 1.07
CCDC88B-204ENST00000463837 MKNK2Q9HBH9 465 aa21.75■■□□□ 1.07
CCDC88B-204ENST00000463837 MFSD6Q6ZSS7 791 aa21.75■■□□□ 1.07
CCDC88B-204ENST00000463837 SLC26A6Q9BXS9 759 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms