RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 RASSF10A6NK89 507 aa19.97■□□□□ 0.79
SKA3-204ENST00000462482 CTCFP49711 727 aaPredicted RBP19.97■□□□□ 0.79
SKA3-204ENST00000462482 KIAA2012Q0VF49 1180 aa19.97■□□□□ 0.79
SKA3-204ENST00000462482 DUSP27Q5VZP5 1158 aa19.97■□□□□ 0.79
SKA3-204ENST00000462482 CIAPIN1Q6FI81 312 aa19.97■□□□□ 0.79
SKA3-204ENST00000462482 PAXIP1Q6ZW49 1069 aaPredicted RBP19.97■□□□□ 0.79
SKA3-204ENST00000462482 CXCL9Q07325 125 aa19.96■□□□□ 0.79
SKA3-204ENST00000462482 SLC51AQ86UW1 340 aa19.96■□□□□ 0.79
SKA3-204ENST00000462482 GPRC5DQ9NZD1 345 aa19.96■□□□□ 0.79
SKA3-204ENST00000462482 FOXN1O15353 648 aa19.95■□□□□ 0.78
SKA3-204ENST00000462482 HSP90B1P14625 803 aaKnown RBP19.95■□□□□ 0.78
SKA3-204ENST00000462482 GOLGA2Q08379 1002 aa19.95■□□□□ 0.78
SKA3-204ENST00000462482 CHMP4AQ9BY43 222 aa19.95■□□□□ 0.78
SKA3-204ENST00000462482 COL4A5P29400 1685 aa19.94■□□□□ 0.78
SKA3-204ENST00000462482 ATP5J2-PTCD1G3V325 749 aa19.94■□□□□ 0.78
SKA3-204ENST00000462482 ECE1P42892 770 aa19.94■□□□□ 0.78
SKA3-204ENST00000462482 GMPSP49915 693 aaPredicted RBP19.94■□□□□ 0.78
SKA3-204ENST00000462482 MAP2K1Q02750 393 aaPredicted RBP19.94■□□□□ 0.78
SKA3-204ENST00000462482 RIC3Q7Z5B4 369 aa19.94■□□□□ 0.78
SKA3-204ENST00000462482 FAM89AQ96GI7 184 aa19.94■□□□□ 0.78
SKA3-204ENST00000462482 ISCA1Q9BUE6 129 aa19.94■□□□□ 0.78
SKA3-204ENST00000462482 PRDM10Q9NQV6 1147 aa19.94■□□□□ 0.78
SKA3-204ENST00000462482 MBIPQ9NS73 344 aa19.94■□□□□ 0.78
SKA3-204ENST00000462482 CDHR2Q9BYE9 1310 aa19.94■□□□□ 0.78
SKA3-204ENST00000462482 WDR33Q9C0J8 1336 aaKnown RBP19.94■□□□□ 0.78
SKA3-204ENST00000462482 RAD17O75943 681 aa19.93■□□□□ 0.78
SKA3-204ENST00000462482 GNAI1P63096 354 aa19.93■□□□□ 0.78
SKA3-204ENST00000462482 ZNF428Q96B54 188 aa19.93■□□□□ 0.78
SKA3-204ENST00000462482 PRKRIP1Q9H875 184 aaPredicted RBP19.93■□□□□ 0.78
SKA3-204ENST00000462482 SF3B3Q15393 1217 aaKnown RBP19.92■□□□□ 0.78
SKA3-204ENST00000462482 BEGAINQ9BUH8 593 aa19.92■□□□□ 0.78
SKA3-204ENST00000462482 IFT57Q9NWB7 429 aa19.92■□□□□ 0.78
SKA3-204ENST00000462482 WBP1LQ9NX94 342 aa19.92■□□□□ 0.78
SKA3-204ENST00000462482 NSFL1CQ9UNZ2 370 aaKnown RBP19.92■□□□□ 0.78
SKA3-204ENST00000462482 ADAMTSL1Q8N6G6 1762 aa19.91■□□□□ 0.78
SKA3-204ENST00000462482 H7C1D1 291 aa19.91■□□□□ 0.78
SKA3-204ENST00000462482 IRS4O14654 1257 aaPredicted RBP19.91■□□□□ 0.78
SKA3-204ENST00000462482 APAF1O14727 1248 aa19.91■□□□□ 0.78
SKA3-204ENST00000462482 TRIM28Q13263 835 aaKnown RBP19.91■□□□□ 0.78
SKA3-204ENST00000462482 WASHC4Q2M389 1173 aa19.91■□□□□ 0.78
SKA3-204ENST00000462482 C6orf229H3BNL8 230 aa19.9■□□□□ 0.78
SKA3-204ENST00000462482 GRM1Q13255 1194 aa19.9■□□□□ 0.78
SKA3-204ENST00000462482 RTL5Q5HYW3 569 aaPredicted RBP19.9■□□□□ 0.78
SKA3-204ENST00000462482 EYA3Q99504 573 aa19.9■□□□□ 0.78
SKA3-204ENST00000462482 TRAF5O00463 557 aa19.89■□□□□ 0.77
SKA3-204ENST00000462482 ZC3H15Q8WU90 426 aaKnown RBP19.89■□□□□ 0.77
SKA3-204ENST00000462482 CAPNS2Q96L46 248 aa19.89■□□□□ 0.77
SKA3-204ENST00000462482 ELL2O00472 640 aaPredicted RBP19.88■□□□□ 0.77
SKA3-204ENST00000462482 DDX58O95786 925 aaKnown RBP19.88■□□□□ 0.77
SKA3-204ENST00000462482 LBX1P52954 281 aa19.88■□□□□ 0.77
SKA3-204ENST00000462482 CELF1Q92879 486 aaKnown RBP19.88■□□□□ 0.77
SKA3-204ENST00000462482 CNOT7Q9UIV1 285 aaKnown RBP19.88■□□□□ 0.77
SKA3-204ENST00000462482 G3V3G9 751 aa19.87■□□□□ 0.77
SKA3-204ENST00000462482 RIMBP2O15034 1052 aa19.87■□□□□ 0.77
SKA3-204ENST00000462482 CELF2O95319 508 aaKnown RBP19.87■□□□□ 0.77
SKA3-204ENST00000462482 ZNF853P0CG23 659 aa19.87■□□□□ 0.77
SKA3-204ENST00000462482 RPS8P62241 208 aaKnown RBP19.87■□□□□ 0.77
SKA3-204ENST00000462482 FMR1Q06787 632 aaKnown RBP eCLIP19.87■□□□□ 0.77
SKA3-204ENST00000462482 DCAF8Q5TAQ9 597 aa19.87■□□□□ 0.77
SKA3-204ENST00000462482 ZBTB38Q8NAP3 1195 aaPredicted RBP19.87■□□□□ 0.77
SKA3-204ENST00000462482 GPR101Q96P66 508 aaPredicted RBP19.87■□□□□ 0.77
SKA3-204ENST00000462482 TLL2Q9Y6L7 1015 aa19.87■□□□□ 0.77
SKA3-204ENST00000462482 CCDC30Q5VVM6 783 aa19.86■□□□□ 0.77
SKA3-204ENST00000462482 CST9Q5W186 159 aa19.86■□□□□ 0.77
SKA3-204ENST00000462482 CDC37L1Q7L3B6 337 aa19.86■□□□□ 0.77
SKA3-204ENST00000462482 MYD88Q99836 296 aa19.86■□□□□ 0.77
SKA3-204ENST00000462482 GPSM2P81274 684 aa19.85■□□□□ 0.77
SKA3-204ENST00000462482 CCDC152Q4G0S7 254 aa19.85■□□□□ 0.77
SKA3-204ENST00000462482 CYP4F22Q6NT55 531 aa19.85■□□□□ 0.77
SKA3-204ENST00000462482 MICALL2Q8IY33 904 aa19.85■□□□□ 0.77
SKA3-204ENST00000462482 CCDC191Q8NCU4 936 aa19.85■□□□□ 0.77
SKA3-204ENST00000462482 DPF2Q92785 391 aa19.85■□□□□ 0.77
SKA3-204ENST00000462482 GLIS2Q9BZE0 524 aaPredicted RBP19.85■□□□□ 0.77
SKA3-204ENST00000462482 ZC3H12CQ9C0D7 883 aaKnown RBP19.85■□□□□ 0.77
SKA3-204ENST00000462482 PHAXQ9H814 394 aaKnown RBP19.85■□□□□ 0.77
SKA3-204ENST00000462482 ZNF408Q9H9D4 720 aa19.85■□□□□ 0.77
SKA3-204ENST00000462482 DBNDD1Q9H9R9 158 aa19.85■□□□□ 0.77
SKA3-204ENST00000462482 PGAP2Q9UHJ9 254 aa19.85■□□□□ 0.77
SKA3-204ENST00000462482 LTBP1Q14766 1721 aa19.85■□□□□ 0.77
SKA3-204ENST00000462482 YDJCA8MPS7 323 aa19.84■□□□□ 0.77
SKA3-204ENST00000462482 RPS12P25398 132 aaKnown RBP19.84■□□□□ 0.77
SKA3-204ENST00000462482 CWC25Q9NXE8 425 aaPredicted RBP19.84■□□□□ 0.77
SKA3-204ENST00000462482 ANKIB1Q9P2G1 1089 aa19.84■□□□□ 0.77
SKA3-204ENST00000462482 ANKRD36CQ5JPF3 1778 aa19.83■□□□□ 0.77
SKA3-204ENST00000462482 PSMD14O00487 310 aa19.83■□□□□ 0.77
SKA3-204ENST00000462482 HSPA8P11142 646 aaKnown RBP19.83■□□□□ 0.77
SKA3-204ENST00000462482 POLLQ9UGP5 575 aa19.83■□□□□ 0.77
SKA3-204ENST00000462482 ZBTB12Q9Y330 459 aaPredicted RBP19.83■□□□□ 0.77
SKA3-204ENST00000462482 ECE2O60344 883 aa19.82■□□□□ 0.76
SKA3-204ENST00000462482 PCCAP05165 728 aaPredicted RBP19.82■□□□□ 0.76
SKA3-204ENST00000462482 MAP2K2P36507 400 aa19.82■□□□□ 0.76
SKA3-204ENST00000462482 DOK7Q18PE1 504 aa19.82■□□□□ 0.76
SKA3-204ENST00000462482 TBC1D16Q8TBP0 767 aa19.82■□□□□ 0.76
SKA3-204ENST00000462482 TRPM4Q8TD43 1214 aa19.82■□□□□ 0.76
SKA3-204ENST00000462482 PDE8AO60658 829 aa19.81■□□□□ 0.76
SKA3-204ENST00000462482 UFL1O94874 794 aa19.81■□□□□ 0.76
SKA3-204ENST00000462482 HIRAP54198 1017 aaPredicted RBP19.81■□□□□ 0.76
SKA3-204ENST00000462482 SAPCD2Q86UD0 394 aa19.81■□□□□ 0.76
SKA3-204ENST00000462482 C8orf58Q8NAV2 365 aa19.81■□□□□ 0.76
SKA3-204ENST00000462482 HHIPL1Q96JK4 782 aa19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms