RNA–Protein interactions for RNA: ENST00000460168.1

HERC4-207, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 2,215 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-207ENST00000460168 SBF2Q86WG5 1849 aa12.65□□□□□ -0.38
HERC4-207ENST00000460168 RABL6Q3YEC7 729 aaPredicted RBP12.64□□□□□ -0.39
HERC4-207ENST00000460168 TTC22Q5TAA0 569 aa12.64□□□□□ -0.39
HERC4-207ENST00000460168 KRT27Q7Z3Y8 459 aa12.64□□□□□ -0.39
HERC4-207ENST00000460168 ERC1Q8IUD2 1116 aa12.64□□□□□ -0.39
HERC4-207ENST00000460168 LINC00116Q8NCU8 138 aa12.64□□□□□ -0.39
HERC4-207ENST00000460168 RREB1Q92766 1687 aa12.64□□□□□ -0.39
HERC4-207ENST00000460168 MX1P20591 662 aa12.64□□□□□ -0.39
HERC4-207ENST00000460168 PDE1AP54750 535 aa12.64□□□□□ -0.39
HERC4-207ENST00000460168 G3BP1Q13283 466 aaKnown RBP eCLIP12.64□□□□□ -0.39
HERC4-207ENST00000460168 LMBR1LQ6UX01 489 aa12.64□□□□□ -0.39
HERC4-207ENST00000460168 SIL1Q9H173 461 aa12.64□□□□□ -0.39
HERC4-207ENST00000460168 CCNL1Q9UK58 526 aaPredicted RBP12.64□□□□□ -0.39
HERC4-207ENST00000460168 NUP98P52948 1817 aa12.63□□□□□ -0.39
HERC4-207ENST00000460168 ANKRD36CQ5JPF3 1778 aa12.63□□□□□ -0.39
HERC4-207ENST00000460168 GSPT1P15170 499 aaKnown RBP12.63□□□□□ -0.39
HERC4-207ENST00000460168 RBM6P78332 1123 aaKnown RBP12.63□□□□□ -0.39
HERC4-207ENST00000460168 FAM196AQ6ZSG2 479 aa12.63□□□□□ -0.39
HERC4-207ENST00000460168 KLHDC4Q8TBB5 520 aa12.63□□□□□ -0.39
HERC4-207ENST00000460168 MAP7D2Q96T17 732 aa12.63□□□□□ -0.39
HERC4-207ENST00000460168 UPF2Q9HAU5 1272 aaKnown RBP12.63□□□□□ -0.39
HERC4-207ENST00000460168 SEC24BO95487 1268 aa12.62□□□□□ -0.39
HERC4-207ENST00000460168 NLRP10Q86W26 655 aa12.62□□□□□ -0.39
HERC4-207ENST00000460168 ZBTB38Q8NAP3 1195 aaPredicted RBP12.62□□□□□ -0.39
HERC4-207ENST00000460168 FAM89AQ96GI7 184 aa12.62□□□□□ -0.39
HERC4-207ENST00000460168 BRWD3Q6RI45 1802 aa12.62□□□□□ -0.39
HERC4-207ENST00000460168 PCCAP05165 728 aaPredicted RBP12.62□□□□□ -0.39
HERC4-207ENST00000460168 FOXO4P98177 505 aa12.62□□□□□ -0.39
HERC4-207ENST00000460168 CLASRPQ8N2M8 674 aaKnown RBP12.62□□□□□ -0.39
HERC4-207ENST00000460168 OSBPL3Q9H4L5 887 aa12.62□□□□□ -0.39
HERC4-207ENST00000460168 CNTNAP4Q9C0A0 1308 aa12.62□□□□□ -0.39
HERC4-207ENST00000460168 TSHZ3Q63HK5 1081 aa12.61□□□□□ -0.39
HERC4-207ENST00000460168 NUTM1Q86Y26 1132 aa12.61□□□□□ -0.39
HERC4-207ENST00000460168 PRDM16Q9HAZ2 1276 aa12.61□□□□□ -0.39
HERC4-207ENST00000460168 TRMT112Q9UI30 125 aaKnown RBP12.61□□□□□ -0.39
HERC4-207ENST00000460168 SALL3Q9BXA9 1300 aa12.61□□□□□ -0.39
HERC4-207ENST00000460168 DMTNQ08495 405 aa12.61□□□□□ -0.39
HERC4-207ENST00000460168 COPRSQ9NQ92 184 aa12.61□□□□□ -0.39
HERC4-207ENST00000460168 CAMTA2O94983 1202 aa12.6□□□□□ -0.39
HERC4-207ENST00000460168 MYCNP04198 464 aaPredicted RBP12.6□□□□□ -0.39
HERC4-207ENST00000460168 PTPN12Q05209 780 aaKnown RBP12.6□□□□□ -0.39
HERC4-207ENST00000460168 ZHX1Q9UKY1 873 aaPredicted RBP12.6□□□□□ -0.39
HERC4-207ENST00000460168 ZNF652Q9Y2D9 606 aa12.6□□□□□ -0.39
HERC4-207ENST00000460168 LY75O60449 1722 aa12.6□□□□□ -0.39
HERC4-207ENST00000460168 UBN2Q6ZU65 1347 aa12.6□□□□□ -0.39
HERC4-207ENST00000460168 GNPATO15228 680 aa12.6□□□□□ -0.39
HERC4-207ENST00000460168 RFX5P48382 616 aaPredicted RBP12.6□□□□□ -0.39
HERC4-207ENST00000460168 MFAP1P55081 439 aaKnown RBP12.6□□□□□ -0.39
HERC4-207ENST00000460168 TAF3Q5VWG9 929 aa12.6□□□□□ -0.39
HERC4-207ENST00000460168 ZNF34Q8IZ26 560 aa12.6□□□□□ -0.39
HERC4-207ENST00000460168 CDC45O75419 566 aa12.59□□□□□ -0.39
HERC4-207ENST00000460168 SASH1O94885 1247 aa12.59□□□□□ -0.39
HERC4-207ENST00000460168 TRIM37O94972 964 aa12.59□□□□□ -0.39
HERC4-207ENST00000460168 IFIT2P09913 472 aaKnown RBP12.59□□□□□ -0.39
HERC4-207ENST00000460168 SDSP20132 328 aa12.59□□□□□ -0.39
HERC4-207ENST00000460168 RC3H1Q5TC82 1133 aaKnown RBP12.59□□□□□ -0.39
HERC4-207ENST00000460168 CERS3Q8IU89 383 aa12.59□□□□□ -0.39
HERC4-207ENST00000460168 STAP2Q9UGK3 403 aa12.59□□□□□ -0.39
HERC4-207ENST00000460168 CDHR2Q9BYE9 1310 aa12.59□□□□□ -0.39
HERC4-207ENST00000460168 APPP05067 770 aa12.58□□□□□ -0.39
HERC4-207ENST00000460168 CCDC57Q2TAC2 916 aa12.58□□□□□ -0.39
HERC4-207ENST00000460168 CC2D2BQ6DHV5 1058 aa12.58□□□□□ -0.39
HERC4-207ENST00000460168 TBC1D9Q6ZT07 1266 aa12.58□□□□□ -0.39
HERC4-207ENST00000460168 SYNE4Q8N205 404 aa12.58□□□□□ -0.39
HERC4-207ENST00000460168 FAM177BA6PVY3 158 aa12.58□□□□□ -0.4
HERC4-207ENST00000460168 IRS4O14654 1257 aaPredicted RBP12.58□□□□□ -0.4
HERC4-207ENST00000460168 KIF20AO95235 890 aa12.58□□□□□ -0.4
HERC4-207ENST00000460168 PPP4R3CPQ6ZMV5 832 aa12.58□□□□□ -0.4
HERC4-207ENST00000460168 AACSQ86V21 672 aa12.58□□□□□ -0.4
HERC4-207ENST00000460168 GPATCH3Q96I76 525 aa12.58□□□□□ -0.4
HERC4-207ENST00000460168 DNAJC2Q99543 621 aaKnown RBP12.58□□□□□ -0.4
HERC4-207ENST00000460168 PLA2G12BQ9BX93 195 aa12.58□□□□□ -0.4
HERC4-207ENST00000460168 NIP7Q9Y221 180 aaKnown RBP eCLIP12.58□□□□□ -0.4
HERC4-207ENST00000460168 RTCBQ9Y3I0 505 aaKnown RBP12.58□□□□□ -0.4
HERC4-207ENST00000460168 AOX1Q06278 1338 aa12.58□□□□□ -0.4
HERC4-207ENST00000460168 TRIM6-TRIM34B2RNG4 842 aa12.57□□□□□ -0.4
HERC4-207ENST00000460168 RPS6KA4O75676 772 aa12.57□□□□□ -0.4
HERC4-207ENST00000460168 RXRBP28702 533 aa12.57□□□□□ -0.4
HERC4-207ENST00000460168 PARP10Q53GL7 1025 aa12.57□□□□□ -0.4
HERC4-207ENST00000460168 CASC1Q6TDU7 716 aa12.57□□□□□ -0.4
HERC4-207ENST00000460168 CCDC85AQ96PX6 553 aaPredicted RBP12.57□□□□□ -0.4
HERC4-207ENST00000460168 BCORQ6W2J9 1755 aa12.57□□□□□ -0.4
HERC4-207ENST00000460168 TAF1LQ8IZX4 1826 aa12.57□□□□□ -0.4
HERC4-207ENST00000460168 SLC20A2Q08357 652 aa12.57□□□□□ -0.4
HERC4-207ENST00000460168 CLEC4GQ6UXB4 293 aa12.57□□□□□ -0.4
HERC4-207ENST00000460168 SH3TC1Q8TE82 1336 aa12.56□□□□□ -0.4
HERC4-207ENST00000460168 SUSD4Q5VX71 490 aa12.56□□□□□ -0.4
HERC4-207ENST00000460168 SMIM5Q71RC9 77 aa12.56□□□□□ -0.4
HERC4-207ENST00000460168 RILPL2Q969X0 211 aa12.56□□□□□ -0.4
HERC4-207ENST00000460168 AK7Q96M32 723 aa12.56□□□□□ -0.4
HERC4-207ENST00000460168 UTP14AQ9BVJ6 771 aaKnown RBP12.56□□□□□ -0.4
HERC4-207ENST00000460168 C4BP0C0L5 1744 aa12.56□□□□□ -0.4
HERC4-207ENST00000460168 TTC41PQ6P2S7 1318 aa12.56□□□□□ -0.4
HERC4-207ENST00000460168 MYH3P11055 1940 aa12.56□□□□□ -0.4
HERC4-207ENST00000460168 ERC2O15083 957 aa12.56□□□□□ -0.4
HERC4-207ENST00000460168 ZPR1O75312 459 aa12.56□□□□□ -0.4
HERC4-207ENST00000460168 CTSWP56202 376 aa12.56□□□□□ -0.4
HERC4-207ENST00000460168 IFIT5Q13325 482 aaKnown RBP12.56□□□□□ -0.4
HERC4-207ENST00000460168 EAF2Q96CJ1 260 aaPredicted RBP12.56□□□□□ -0.4
HERC4-207ENST00000460168 ZNF594Q96JF6 807 aaPredicted RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms