RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 FAM89AQ96GI7 184 aa29.45■■■□□ 2.31
PTPN4-207ENST00000460162 PCNTO95613 3336 aa29.45■■■□□ 2.3
PTPN4-207ENST00000460162 ELL2O00472 640 aaPredicted RBP29.44■■■□□ 2.3
PTPN4-207ENST00000460162 CCDC27Q2M243 656 aa29.44■■■□□ 2.3
PTPN4-207ENST00000460162 RIC3Q7Z5B4 369 aa29.44■■■□□ 2.3
PTPN4-207ENST00000460162 MPNDQ8N594 471 aa29.44■■■□□ 2.3
PTPN4-207ENST00000460162 SF3B3Q15393 1217 aaKnown RBP29.43■■■□□ 2.3
PTPN4-207ENST00000460162 C8orf58Q8NAV2 365 aa29.43■■■□□ 2.3
PTPN4-207ENST00000460162 ZNF428Q96B54 188 aa29.43■■■□□ 2.3
PTPN4-207ENST00000460162 PHAXQ9H814 394 aaKnown RBP29.43■■■□□ 2.3
PTPN4-207ENST00000460162 SCNN1DP51172 638 aa29.42■■■□□ 2.3
PTPN4-207ENST00000460162 CLEC11AQ9Y240 323 aa29.42■■■□□ 2.3
PTPN4-207ENST00000460162 ITGBL1O95965 494 aaPredicted RBP29.41■■■□□ 2.3
PTPN4-207ENST00000460162 CCDC30Q5VVM6 783 aa29.41■■■□□ 2.3
PTPN4-207ENST00000460162 KIAA2012Q0VF49 1180 aa29.4■■■□□ 2.3
PTPN4-207ENST00000460162 ZNRF3Q9ULT6 936 aa29.4■■■□□ 2.3
PTPN4-207ENST00000460162 IRS4O14654 1257 aaPredicted RBP29.39■■■□□ 2.3
PTPN4-207ENST00000460162 COL4A1P02462 1669 aa29.39■■■□□ 2.3
PTPN4-207ENST00000460162 DDX58O95786 925 aaKnown RBP29.38■■■□□ 2.29
PTPN4-207ENST00000460162 HSP90B1P14625 803 aaKnown RBP29.38■■■□□ 2.29
PTPN4-207ENST00000460162 ZBTB38Q8NAP3 1195 aaPredicted RBP29.38■■■□□ 2.29
PTPN4-207ENST00000460162 NCBP3Q53F19 620 aaKnown RBP29.37■■■□□ 2.29
PTPN4-207ENST00000460162 RTL5Q5HYW3 569 aaPredicted RBP29.37■■■□□ 2.29
PTPN4-207ENST00000460162 WWC1Q8IX03 1113 aa29.37■■■□□ 2.29
PTPN4-207ENST00000460162 CCDC191Q8NCU4 936 aa29.37■■■□□ 2.29
PTPN4-207ENST00000460162 MYD88Q99836 296 aa29.37■■■□□ 2.29
PTPN4-207ENST00000460162 CNTNAP1P78357 1384 aa29.37■■■□□ 2.29
PTPN4-207ENST00000460162 TMEM88BA6NKF7 163 aa29.36■■■□□ 2.29
PTPN4-207ENST00000460162 CNTROBQ8N137 903 aa29.36■■■□□ 2.29
PTPN4-207ENST00000460162 CELF1Q92879 486 aaKnown RBP29.36■■■□□ 2.29
PTPN4-207ENST00000460162 TSR2Q969E8 191 aaKnown RBP29.36■■■□□ 2.29
PTPN4-207ENST00000460162 MRS2Q9HD23 443 aa29.36■■■□□ 2.29
PTPN4-207ENST00000460162 CDHR2Q9BYE9 1310 aa29.36■■■□□ 2.29
PTPN4-207ENST00000460162 EPS15P42566 896 aa29.35■■■□□ 2.29
PTPN4-207ENST00000460162 CXCL9Q07325 125 aa29.35■■■□□ 2.29
PTPN4-207ENST00000460162 MAP1SQ66K74 1059 aaPredicted RBP29.35■■■□□ 2.29
PTPN4-207ENST00000460162 USP50Q70EL3 339 aaPredicted RBP29.35■■■□□ 2.29
PTPN4-207ENST00000460162 TSPYL6Q8N831 410 aa29.35■■■□□ 2.29
PTPN4-207ENST00000460162 MKRN1Q9UHC7 482 aaKnown RBP29.35■■■□□ 2.29
PTPN4-207ENST00000460162 IL16Q14005 1332 aa29.35■■■□□ 2.29
PTPN4-207ENST00000460162 ZNF316A6NFI3 1004 aaPredicted RBP29.34■■■□□ 2.29
PTPN4-207ENST00000460162 ANP32CO43423 234 aa29.34■■■□□ 2.29
PTPN4-207ENST00000460162 METTL22Q9BUU2 404 aaPredicted RBP29.34■■■□□ 2.29
PTPN4-207ENST00000460162 GPRC5DQ9NZD1 345 aa29.34■■■□□ 2.29
PTPN4-207ENST00000460162 PCCAP05165 728 aaPredicted RBP29.33■■■□□ 2.29
PTPN4-207ENST00000460162 CWC25Q9NXE8 425 aaPredicted RBP29.33■■■□□ 2.29
PTPN4-207ENST00000460162 HSPA1AP0DMV8 641 aaKnown RBP29.32■■■□□ 2.28
PTPN4-207ENST00000460162 HSPA1BP0DMV9 641 aaKnown RBP29.32■■■□□ 2.28
PTPN4-207ENST00000460162 CIAPIN1Q6FI81 312 aa29.32■■■□□ 2.28
PTPN4-207ENST00000460162 STK31Q9BXU1 1019 aa29.32■■■□□ 2.28
PTPN4-207ENST00000460162 MYH3P11055 1940 aa29.32■■■□□ 2.28
PTPN4-207ENST00000460162 ADARB2Q9NS39 739 aaKnown RBP29.31■■■□□ 2.28
PTPN4-207ENST00000460162 TRPM7Q96QT4 1865 aa29.3■■■□□ 2.28
PTPN4-207ENST00000460162 TNIP1Q15025 636 aa29.3■■■□□ 2.28
PTPN4-207ENST00000460162 TWISTNBQ3B726 338 aaPredicted RBP29.3■■■□□ 2.28
PTPN4-207ENST00000460162 NSFL1CQ9UNZ2 370 aaKnown RBP29.3■■■□□ 2.28
PTPN4-207ENST00000460162 CACNA1FO60840 1977 aa29.3■■■□□ 2.28
PTPN4-207ENST00000460162 MAP3K2Q9Y2U5 619 aa29.29■■■□□ 2.28
PTPN4-207ENST00000460162 PDE8AO60658 829 aa29.28■■■□□ 2.28
PTPN4-207ENST00000460162 GMPSP49915 693 aaPredicted RBP29.28■■■□□ 2.28
PTPN4-207ENST00000460162 RPS8P62241 208 aaKnown RBP29.28■■■□□ 2.28
PTPN4-207ENST00000460162 WASHC4Q2M389 1173 aa29.28■■■□□ 2.28
PTPN4-207ENST00000460162 CCDC152Q4G0S7 254 aa29.28■■■□□ 2.28
PTPN4-207ENST00000460162 KSR2Q6VAB6 950 aa29.28■■■□□ 2.28
PTPN4-207ENST00000460162 YDJCA8MPS7 323 aa29.27■■■□□ 2.28
PTPN4-207ENST00000460162 RAD17O75943 681 aa29.27■■■□□ 2.28
PTPN4-207ENST00000460162 GPSM2P81274 684 aa29.26■■■□□ 2.27
PTPN4-207ENST00000460162 EYA3Q99504 573 aa29.26■■■□□ 2.27
PTPN4-207ENST00000460162 PI4KAP2A4QPH2 592 aa29.25■■■□□ 2.27
PTPN4-207ENST00000460162 PI4KAP1Q8N8J0 262 aa29.25■■■□□ 2.27
PTPN4-207ENST00000460162 BCL2L13Q9BXK5 485 aa29.25■■■□□ 2.27
PTPN4-207ENST00000460162 SEC31BQ9NQW1 1179 aa29.25■■■□□ 2.27
PTPN4-207ENST00000460162 POLLQ9UGP5 575 aa29.25■■■□□ 2.27
PTPN4-207ENST00000460162 FANCIQ9NVI1 1328 aa29.24■■■□□ 2.27
PTPN4-207ENST00000460162 RASSF10A6NK89 507 aa29.24■■■□□ 2.27
PTPN4-207ENST00000460162 C6orf229H3BNL8 230 aa29.24■■■□□ 2.27
PTPN4-207ENST00000460162 NEXNQ0ZGT2 675 aa29.24■■■□□ 2.27
PTPN4-207ENST00000460162 IGKV5-2P06315 115 aa29.23■■■□□ 2.27
PTPN4-207ENST00000460162 COL13A1Q5TAT6 717 aaPredicted RBP29.23■■■□□ 2.27
PTPN4-207ENST00000460162 TBC1D16Q8TBP0 767 aa29.23■■■□□ 2.27
PTPN4-207ENST00000460162 PODXL2Q9NZ53 605 aa29.23■■■□□ 2.27
PTPN4-207ENST00000460162 THSD7BQ9C0I4 1608 aa29.23■■■□□ 2.27
PTPN4-207ENST00000460162 DBNDD1Q9H9R9 158 aa29.22■■■□□ 2.27
PTPN4-207ENST00000460162 SPEF2Q9C093 1822 aa29.22■■■□□ 2.27
PTPN4-207ENST00000460162 VEGFBP49765 207 aa29.21■■■□□ 2.27
PTPN4-207ENST00000460162 WDR63Q8IWG1 891 aa29.21■■■□□ 2.27
PTPN4-207ENST00000460162 PSME4Q14997 1843 aa29.2■■■□□ 2.27
PTPN4-207ENST00000460162 SLC4A2P04920 1241 aa29.2■■■□□ 2.26
PTPN4-207ENST00000460162 CTSWP56202 376 aa29.2■■■□□ 2.26
PTPN4-207ENST00000460162 JARID2Q92833 1246 aaPredicted RBP29.2■■■□□ 2.26
PTPN4-207ENST00000460162 SCN9AQ15858 1988 aa29.19■■■□□ 2.26
PTPN4-207ENST00000460162 RIMBP2O15034 1052 aa29.19■■■□□ 2.26
PTPN4-207ENST00000460162 ECE2O60344 883 aa29.19■■■□□ 2.26
PTPN4-207ENST00000460162 ZC3H15Q8WU90 426 aaKnown RBP29.19■■■□□ 2.26
PTPN4-207ENST00000460162 ABT1Q9ULW3 272 aaKnown RBP29.19■■■□□ 2.26
PTPN4-207ENST00000460162 RTL9Q8NET4 1388 aa29.18■■■□□ 2.26
PTPN4-207ENST00000460162 NEURL1BA8MQ27 555 aa29.18■■■□□ 2.26
PTPN4-207ENST00000460162 PSMD14O00487 310 aa29.18■■■□□ 2.26
PTPN4-207ENST00000460162 UFL1O94874 794 aa29.18■■■□□ 2.26
PTPN4-207ENST00000460162 DEFB115Q30KQ5 88 aa29.18■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms