RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 IRS4O14654 1257 aaPredicted RBP15.49■□□□□ 0.07
USP40-210ENST00000454354 TCERG1O14776 1098 aaKnown RBP15.49■□□□□ 0.07
USP40-210ENST00000454354 KSR2Q6VAB6 950 aa15.49■□□□□ 0.07
USP40-210ENST00000454354 FAM9BQ8IZU0 186 aa15.49■□□□□ 0.07
USP40-210ENST00000454354 JDP2Q8WYK2 163 aa15.49■□□□□ 0.07
USP40-210ENST00000454354 ZNF428Q96B54 188 aa15.49■□□□□ 0.07
USP40-210ENST00000454354 PCCAP05165 728 aaPredicted RBP15.48■□□□□ 0.07
USP40-210ENST00000454354 HSP90B1P14625 803 aaKnown RBP15.48■□□□□ 0.07
USP40-210ENST00000454354 GPC2Q8N158 579 aa15.48■□□□□ 0.07
USP40-210ENST00000454354 TMX4Q9H1E5 349 aaPredicted RBP15.48■□□□□ 0.07
USP40-210ENST00000454354 MAP3K2Q9Y2U5 619 aa15.48■□□□□ 0.07
USP40-210ENST00000454354 LARGE2Q8N3Y3 721 aa15.47■□□□□ 0.07
USP40-210ENST00000454354 SUPT20HQ8NEM7 779 aa15.47■□□□□ 0.07
USP40-210ENST00000454354 CWC25Q9NXE8 425 aaPredicted RBP15.47■□□□□ 0.07
USP40-210ENST00000454354 SALL2Q9Y467 1007 aaPredicted RBP15.47■□□□□ 0.07
USP40-210ENST00000454354 PSME4Q14997 1843 aa15.47■□□□□ 0.07
USP40-210ENST00000454354 ZNF521Q96K83 1311 aa15.46■□□□□ 0.07
USP40-210ENST00000454354 CDHR2Q9BYE9 1310 aa15.46■□□□□ 0.07
USP40-210ENST00000454354 PI4KAP2A4QPH2 592 aa15.46■□□□□ 0.07
USP40-210ENST00000454354 VAMP4O75379 141 aa15.46■□□□□ 0.07
USP40-210ENST00000454354 SLC4A2P04920 1241 aa15.46■□□□□ 0.07
USP40-210ENST00000454354 IGKV5-2P06315 115 aa15.46■□□□□ 0.07
USP40-210ENST00000454354 RTL5Q5HYW3 569 aaPredicted RBP15.46■□□□□ 0.07
USP40-210ENST00000454354 DPP8Q6V1X1 898 aaPredicted RBP15.46■□□□□ 0.07
USP40-210ENST00000454354 G2E3Q7L622 706 aa15.46■□□□□ 0.07
USP40-210ENST00000454354 MPNDQ8N594 471 aa15.46■□□□□ 0.07
USP40-210ENST00000454354 PI4KAP1Q8N8J0 262 aa15.46■□□□□ 0.07
USP40-210ENST00000454354 TAF1DQ9H5J8 278 aaPredicted RBP15.46■□□□□ 0.07
USP40-210ENST00000454354 SPINK5Q9NQ38 1064 aaPredicted RBP15.46■□□□□ 0.07
USP40-210ENST00000454354 PPIP5K2O43314 1243 aa15.45■□□□□ 0.06
USP40-210ENST00000454354 EIF6P56537 245 aaKnown RBP15.45■□□□□ 0.06
USP40-210ENST00000454354 EXOSC9Q06265 439 aaKnown RBP15.45■□□□□ 0.06
USP40-210ENST00000454354 NIM1KQ8IY84 436 aa15.45■□□□□ 0.06
USP40-210ENST00000454354 DNAJC5GQ8N7S2 189 aa15.45■□□□□ 0.06
USP40-210ENST00000454354 CELF1Q92879 486 aaKnown RBP15.45■□□□□ 0.06
USP40-210ENST00000454354 PDE8AO60658 829 aa15.44■□□□□ 0.06
USP40-210ENST00000454354 POTEIP0CG38 1075 aa15.44■□□□□ 0.06
USP40-210ENST00000454354 POTEJP0CG39 1038 aa15.44■□□□□ 0.06
USP40-210ENST00000454354 KIAA2012Q0VF49 1180 aa15.44■□□□□ 0.06
USP40-210ENST00000454354 NEXNQ0ZGT2 675 aa15.44■□□□□ 0.06
USP40-210ENST00000454354 FLIIQ13045 1269 aa15.44■□□□□ 0.06
USP40-210ENST00000454354 AOC3Q16853 763 aa15.44■□□□□ 0.06
USP40-210ENST00000454354 CHADLQ6NUI6 762 aa15.44■□□□□ 0.06
USP40-210ENST00000454354 MYH16Q9H6N6 1097 aa15.44■□□□□ 0.06
USP40-210ENST00000454354 HACL1Q9UJ83 578 aa15.44■□□□□ 0.06
USP40-210ENST00000454354 LDHDQ86WU2 507 aa15.43■□□□□ 0.06
USP40-210ENST00000454354 A0A1B0GUL6 1792 aa15.43■□□□□ 0.06
USP40-210ENST00000454354 SCN9AQ15858 1988 aa15.43■□□□□ 0.06
USP40-210ENST00000454354 PCNTO95613 3336 aa15.43■□□□□ 0.06
USP40-210ENST00000454354 TRPM7Q96QT4 1865 aa15.42■□□□□ 0.06
USP40-210ENST00000454354 NEURL1BA8MQ27 555 aa15.42■□□□□ 0.06
USP40-210ENST00000454354 EPHX2P34913 555 aa15.42■□□□□ 0.06
USP40-210ENST00000454354 CCDC152Q4G0S7 254 aa15.42■□□□□ 0.06
USP40-210ENST00000454354 ZNRF3Q9ULT6 936 aa15.42■□□□□ 0.06
USP40-210ENST00000454354 RTL9Q8NET4 1388 aa15.41■□□□□ 0.06
USP40-210ENST00000454354 SCNN1DP51172 638 aa15.41■□□□□ 0.06
USP40-210ENST00000454354 RPS8P62241 208 aaKnown RBP15.41■□□□□ 0.06
USP40-210ENST00000454354 CWF19L2Q2TBE0 894 aaKnown RBP15.41■□□□□ 0.06
USP40-210ENST00000454354 PNMA8AQ86V59 439 aaPredicted RBP15.41■□□□□ 0.06
USP40-210ENST00000454354 HTRA3P83110 453 aa15.4■□□□□ 0.06
USP40-210ENST00000454354 FKBP5Q13451 457 aaPredicted RBP15.4■□□□□ 0.06
USP40-210ENST00000454354 DNAAF4Q8WXU2 420 aa15.4■□□□□ 0.06
USP40-210ENST00000454354 JARID2Q92833 1246 aaPredicted RBP15.4■□□□□ 0.06
USP40-210ENST00000454354 SEC31BQ9NQW1 1179 aa15.4■□□□□ 0.06
USP40-210ENST00000454354 GJA3Q9Y6H8 435 aa15.4■□□□□ 0.06
USP40-210ENST00000454354 ZNF646O15015 1829 aaPredicted RBP15.4■□□□□ 0.06
USP40-210ENST00000454354 PASKQ96RG2 1323 aa15.4■□□□□ 0.06
USP40-210ENST00000454354 H7C1W4 665 aa15.39■□□□□ 0.05
USP40-210ENST00000454354 LMOD1P29536 600 aaPredicted RBP15.39■□□□□ 0.05
USP40-210ENST00000454354 CTSWP56202 376 aa15.39■□□□□ 0.05
USP40-210ENST00000454354 GPSM2P81274 684 aa15.39■□□□□ 0.05
USP40-210ENST00000454354 CXCL9Q07325 125 aa15.39■□□□□ 0.05
USP40-210ENST00000454354 GCKRQ14397 625 aa15.39■□□□□ 0.05
USP40-210ENST00000454354 KLRG1Q96E93 195 aa15.39■□□□□ 0.05
USP40-210ENST00000454354 PODXL2Q9NZ53 605 aa15.39■□□□□ 0.05
USP40-210ENST00000454354 NSFL1CQ9UNZ2 370 aaKnown RBP15.39■□□□□ 0.05
USP40-210ENST00000454354 CASP7P55210 303 aa15.38■□□□□ 0.05
USP40-210ENST00000454354 EAPPQ56P03 285 aaPredicted RBP15.38■□□□□ 0.05
USP40-210ENST00000454354 LINS1Q8NG48 757 aa15.38■□□□□ 0.05
USP40-210ENST00000454354 TTLL11Q8NHH1 800 aa15.38■□□□□ 0.05
USP40-210ENST00000454354 PLA2G12BQ9BX93 195 aa15.38■□□□□ 0.05
USP40-210ENST00000454354 POLLQ9UGP5 575 aa15.38■□□□□ 0.05
USP40-210ENST00000454354 YDJCA8MPS7 323 aa15.37■□□□□ 0.05
USP40-210ENST00000454354 CCER2I3L3R5 266 aa15.37■□□□□ 0.05
USP40-210ENST00000454354 ITGBL1O95965 494 aaPredicted RBP15.37■□□□□ 0.05
USP40-210ENST00000454354 WASHC4Q2M389 1173 aa15.37■□□□□ 0.05
USP40-210ENST00000454354 CIAPIN1Q6FI81 312 aa15.37■□□□□ 0.05
USP40-210ENST00000454354 UBE3BQ7Z3V4 1068 aa15.37■□□□□ 0.05
USP40-210ENST00000454354 JMYQ8N9B5 988 aa15.37■□□□□ 0.05
USP40-210ENST00000454354 TBC1D16Q8TBP0 767 aa15.37■□□□□ 0.05
USP40-210ENST00000454354 EYA3Q99504 573 aa15.37■□□□□ 0.05
USP40-210ENST00000454354 EPS15P42566 896 aa15.36■□□□□ 0.05
USP40-210ENST00000454354 TNIP1Q15025 636 aa15.36■□□□□ 0.05
USP40-210ENST00000454354 ANKRD18AQ8IVF6 992 aa15.36■□□□□ 0.05
USP40-210ENST00000454354 CCDC85AQ96PX6 553 aaPredicted RBP15.36■□□□□ 0.05
USP40-210ENST00000454354 CREBZFQ9NS37 354 aa15.36■□□□□ 0.05
USP40-210ENST00000454354 GPRC5DQ9NZD1 345 aa15.36■□□□□ 0.05
USP40-210ENST00000454354 C6orf229H3BNL8 230 aa15.35■□□□□ 0.05
USP40-210ENST00000454354 BEND3Q5T5X7 828 aa15.35■□□□□ 0.05
USP40-210ENST00000454354 USP50Q70EL3 339 aaPredicted RBP15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms