RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 NIM1KQ8IY84 436 aa23.13■■□□□ 1.29
SQSTM1-204ENST00000453046 TSPYL6Q8N831 410 aa23.13■■□□□ 1.29
SQSTM1-204ENST00000453046 MYD88Q99836 296 aa23.13■■□□□ 1.29
SQSTM1-204ENST00000453046 MPNDQ8N594 471 aa23.12■■□□□ 1.29
SQSTM1-204ENST00000453046 KLRG1Q96E93 195 aa23.12■■□□□ 1.29
SQSTM1-204ENST00000453046 IRS4O14654 1257 aaPredicted RBP23.11■■□□□ 1.29
SQSTM1-204ENST00000453046 EPHX2P34913 555 aa23.11■■□□□ 1.29
SQSTM1-204ENST00000453046 AOC3Q16853 763 aa23.11■■□□□ 1.29
SQSTM1-204ENST00000453046 LDHDQ86WU2 507 aa23.11■■□□□ 1.29
SQSTM1-204ENST00000453046 STK31Q9BXU1 1019 aa23.11■■□□□ 1.29
SQSTM1-204ENST00000453046 VPS33BQ9H267 617 aa23.11■■□□□ 1.29
SQSTM1-204ENST00000453046 CLEC11AQ9Y240 323 aa23.11■■□□□ 1.29
SQSTM1-204ENST00000453046 SALL2Q9Y467 1007 aaPredicted RBP23.11■■□□□ 1.29
SQSTM1-204ENST00000453046 SCN4AP35499 1836 aa23.1■■□□□ 1.29
SQSTM1-204ENST00000453046 TMC4Q7Z404 712 aa23.1■■□□□ 1.29
SQSTM1-204ENST00000453046 LAMB2P55268 1798 aa23.09■■□□□ 1.29
SQSTM1-204ENST00000453046 HSP90B1P14625 803 aaKnown RBP23.09■■□□□ 1.29
SQSTM1-204ENST00000453046 LMOD1P29536 600 aaPredicted RBP23.09■■□□□ 1.29
SQSTM1-204ENST00000453046 SF3B3Q15393 1217 aaKnown RBP23.09■■□□□ 1.29
SQSTM1-204ENST00000453046 NCBP3Q53F19 620 aaKnown RBP23.09■■□□□ 1.29
SQSTM1-204ENST00000453046 PNMA8AQ86V59 439 aaPredicted RBP23.09■■□□□ 1.29
SQSTM1-204ENST00000453046 ZBTB38Q8NAP3 1195 aaPredicted RBP23.09■■□□□ 1.29
SQSTM1-204ENST00000453046 IL16Q14005 1332 aa23.08■■□□□ 1.29
SQSTM1-204ENST00000453046 TWISTNBQ3B726 338 aaPredicted RBP23.08■■□□□ 1.29
SQSTM1-204ENST00000453046 CCDC191Q8NCU4 936 aa23.08■■□□□ 1.29
SQSTM1-204ENST00000453046 RTFDC1Q9BY42 306 aaPredicted RBP23.08■■□□□ 1.29
SQSTM1-204ENST00000453046 COL4A5P29400 1685 aa23.07■■□□□ 1.28
SQSTM1-204ENST00000453046 METTL22Q9BUU2 404 aaPredicted RBP23.07■■□□□ 1.28
SQSTM1-204ENST00000453046 CWC25Q9NXE8 425 aaPredicted RBP23.07■■□□□ 1.28
SQSTM1-204ENST00000453046 CELF1Q92879 486 aaKnown RBP23.06■■□□□ 1.28
SQSTM1-204ENST00000453046 MAP3K2Q9Y2U5 619 aa23.06■■□□□ 1.28
SQSTM1-204ENST00000453046 KSR2Q6VAB6 950 aa23.05■■□□□ 1.28
SQSTM1-204ENST00000453046 ZNRF3Q9ULT6 936 aa23.05■■□□□ 1.28
SQSTM1-204ENST00000453046 DDX60Q8IY21 1712 aaKnown RBP23.05■■□□□ 1.28
SQSTM1-204ENST00000453046 PI4KAP2A4QPH2 592 aa23.04■■□□□ 1.28
SQSTM1-204ENST00000453046 PCCAP05165 728 aaPredicted RBP23.04■■□□□ 1.28
SQSTM1-204ENST00000453046 KIAA2012Q0VF49 1180 aa23.04■■□□□ 1.28
SQSTM1-204ENST00000453046 PI4KAP1Q8N8J0 262 aa23.04■■□□□ 1.28
SQSTM1-204ENST00000453046 NSFL1CQ9UNZ2 370 aaKnown RBP23.04■■□□□ 1.28
SQSTM1-204ENST00000453046 SLC4A2P04920 1241 aa23.03■■□□□ 1.28
SQSTM1-204ENST00000453046 NEXNQ0ZGT2 675 aa23.03■■□□□ 1.28
SQSTM1-204ENST00000453046 WDR63Q8IWG1 891 aa23.03■■□□□ 1.28
SQSTM1-204ENST00000453046 TAF1P21675 1872 aa23.02■■□□□ 1.28
SQSTM1-204ENST00000453046 SCNN1DP51172 638 aa23.02■■□□□ 1.28
SQSTM1-204ENST00000453046 RPS8P62241 208 aaKnown RBP23.02■■□□□ 1.28
SQSTM1-204ENST00000453046 JMYQ8N9B5 988 aa23.02■■□□□ 1.28
SQSTM1-204ENST00000453046 JARID2Q92833 1246 aaPredicted RBP23.02■■□□□ 1.28
SQSTM1-204ENST00000453046 CREBZFQ9NS37 354 aa23.02■■□□□ 1.28
SQSTM1-204ENST00000453046 FANCIQ9NVI1 1328 aa23.02■■□□□ 1.28
SQSTM1-204ENST00000453046 PDE8AO60658 829 aa23.01■■□□□ 1.27
SQSTM1-204ENST00000453046 EPS15P42566 896 aa23.01■■□□□ 1.27
SQSTM1-204ENST00000453046 CXCL9Q07325 125 aa23.01■■□□□ 1.27
SQSTM1-204ENST00000453046 CCDC152Q4G0S7 254 aa23.01■■□□□ 1.27
SQSTM1-204ENST00000453046 ZNF521Q96K83 1311 aa23.01■■□□□ 1.27
SQSTM1-204ENST00000453046 C6orf229H3BNL8 230 aa23■■□□□ 1.27
SQSTM1-204ENST00000453046 WASHC4Q2M389 1173 aa23■■□□□ 1.27
SQSTM1-204ENST00000453046 MAP1SQ66K74 1059 aaPredicted RBP23■■□□□ 1.27
SQSTM1-204ENST00000453046 CIAPIN1Q6FI81 312 aa23■■□□□ 1.27
SQSTM1-204ENST00000453046 TNIP1Q15025 636 aa22.99■■□□□ 1.27
SQSTM1-204ENST00000453046 G2E3Q7L622 706 aa22.99■■□□□ 1.27
SQSTM1-204ENST00000453046 CNTROBQ8N137 903 aa22.99■■□□□ 1.27
SQSTM1-204ENST00000453046 CCDC85AQ96PX6 553 aaPredicted RBP22.99■■□□□ 1.27
SQSTM1-204ENST00000453046 SEC31BQ9NQW1 1179 aa22.99■■□□□ 1.27
SQSTM1-204ENST00000453046 PASKQ96RG2 1323 aa22.99■■□□□ 1.27
SQSTM1-204ENST00000453046 RAD17O75943 681 aa22.98■■□□□ 1.27
SQSTM1-204ENST00000453046 ITGBL1O95965 494 aaPredicted RBP22.98■■□□□ 1.27
SQSTM1-204ENST00000453046 GPSM2P81274 684 aa22.98■■□□□ 1.27
SQSTM1-204ENST00000453046 USP50Q70EL3 339 aaPredicted RBP22.98■■□□□ 1.27
SQSTM1-204ENST00000453046 EYA3Q99504 573 aa22.98■■□□□ 1.27
SQSTM1-204ENST00000453046 BCL2L13Q9BXK5 485 aa22.98■■□□□ 1.27
SQSTM1-204ENST00000453046 RIMBP2O15034 1052 aa22.97■■□□□ 1.27
SQSTM1-204ENST00000453046 IGKV5-2P06315 115 aa22.97■■□□□ 1.27
SQSTM1-204ENST00000453046 GPRC5DQ9NZD1 345 aa22.97■■□□□ 1.27
SQSTM1-204ENST00000453046 MKRN1Q9UHC7 482 aaKnown RBP22.97■■□□□ 1.27
SQSTM1-204ENST00000453046 TMEM88BA6NKF7 163 aa22.96■■□□□ 1.27
SQSTM1-204ENST00000453046 GMPSP49915 693 aaPredicted RBP22.96■■□□□ 1.27
SQSTM1-204ENST00000453046 EXOSC9Q06265 439 aaKnown RBP22.96■■□□□ 1.27
SQSTM1-204ENST00000453046 FLIIQ13045 1269 aa22.96■■□□□ 1.27
SQSTM1-204ENST00000453046 FKBP5Q13451 457 aaPredicted RBP22.96■■□□□ 1.27
SQSTM1-204ENST00000453046 CWF19L2Q2TBE0 894 aaKnown RBP22.96■■□□□ 1.27
SQSTM1-204ENST00000453046 ADARB2Q9NS39 739 aaKnown RBP22.96■■□□□ 1.27
SQSTM1-204ENST00000453046 ANKIB1Q9P2G1 1089 aa22.96■■□□□ 1.27
SQSTM1-204ENST00000453046 POLLQ9UGP5 575 aa22.96■■□□□ 1.27
SQSTM1-204ENST00000453046 CDHR2Q9BYE9 1310 aa22.96■■□□□ 1.27
SQSTM1-204ENST00000453046 LRRC37AA6NMS7 1700 aa22.95■■□□□ 1.26
SQSTM1-204ENST00000453046 MYH16Q9H6N6 1097 aa22.95■■□□□ 1.26
SQSTM1-204ENST00000453046 NEURL1BA8MQ27 555 aa22.94■■□□□ 1.26
SQSTM1-204ENST00000453046 VAMP4O75379 141 aa22.94■■□□□ 1.26
SQSTM1-204ENST00000453046 ANKRD18AQ8IVF6 992 aa22.94■■□□□ 1.26
SQSTM1-204ENST00000453046 DBNDD1Q9H9R9 158 aa22.94■■□□□ 1.26
SQSTM1-204ENST00000453046 ADAMTSL1Q8N6G6 1762 aa22.94■■□□□ 1.26
SQSTM1-204ENST00000453046 LTBP1Q14766 1721 aa22.94■■□□□ 1.26
SQSTM1-204ENST00000453046 DUOX1Q9NRD9 1551 aa22.93■■□□□ 1.26
SQSTM1-204ENST00000453046 YDJCA8MPS7 323 aa22.93■■□□□ 1.26
SQSTM1-204ENST00000453046 CTSWP56202 376 aa22.93■■□□□ 1.26
SQSTM1-204ENST00000453046 TBC1D16Q8TBP0 767 aa22.93■■□□□ 1.26
SQSTM1-204ENST00000453046 ZC3H12CQ9C0D7 883 aaKnown RBP22.93■■□□□ 1.26
SQSTM1-204ENST00000453046 G3V3G9 751 aa22.92■■□□□ 1.26
SQSTM1-204ENST00000453046 DCAF8Q5TAQ9 597 aa22.92■■□□□ 1.26
SQSTM1-204ENST00000453046 DNAAF4Q8WXU2 420 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms