RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 NPHP1O15259 732 aa28.52■■■□□ 2.16
CPSF4-204ENST00000436336 RAB11FIP3O75154 756 aa28.52■■■□□ 2.16
CPSF4-204ENST00000436336 PTPN12Q05209 780 aaKnown RBP28.52■■■□□ 2.16
CPSF4-204ENST00000436336 DDR1Q08345 913 aa28.52■■■□□ 2.16
CPSF4-204ENST00000436336 CCDC57Q2TAC2 916 aa28.52■■■□□ 2.16
CPSF4-204ENST00000436336 PA2G4Q9UQ80 394 aaKnown RBP28.52■■■□□ 2.16
CPSF4-204ENST00000436336 RIC1Q4ADV7 1423 aa28.52■■■□□ 2.16
CPSF4-204ENST00000436336 FAM161AQ3B820 660 aa28.52■■■□□ 2.16
CPSF4-204ENST00000436336 CHD1LQ86WJ1 897 aa28.51■■■□□ 2.15
CPSF4-204ENST00000436336 TNRC6CQ9HCJ0 1690 aaKnown RBP28.51■■■□□ 2.15
CPSF4-204ENST00000436336 IFIT5Q13325 482 aaKnown RBP28.5■■■□□ 2.15
CPSF4-204ENST00000436336 PRR5LQ6MZQ0 368 aa28.5■■■□□ 2.15
CPSF4-204ENST00000436336 GREM2Q9H772 168 aa28.5■■■□□ 2.15
CPSF4-204ENST00000436336 RTL9Q8NET4 1388 aa28.5■■■□□ 2.15
CPSF4-204ENST00000436336 CCDC152Q4G0S7 254 aa28.49■■■□□ 2.15
CPSF4-204ENST00000436336 KLHDC4Q8TBB5 520 aa28.49■■■□□ 2.15
CPSF4-204ENST00000436336 CCDC85AQ96PX6 553 aaPredicted RBP28.49■■■□□ 2.15
CPSF4-204ENST00000436336 ZBTB47Q9UFB7 747 aaPredicted RBP28.49■■■□□ 2.15
CPSF4-204ENST00000436336 G3BP1Q13283 466 aaKnown RBP eCLIP28.49■■■□□ 2.15
CPSF4-204ENST00000436336 SF3B3Q15393 1217 aaKnown RBP28.49■■■□□ 2.15
CPSF4-204ENST00000436336 SLC16A10Q8TF71 515 aa28.49■■■□□ 2.15
CPSF4-204ENST00000436336 NLRP3Q96P20 1036 aa28.49■■■□□ 2.15
CPSF4-204ENST00000436336 LRRCC1Q9C099 1032 aa28.49■■■□□ 2.15
CPSF4-204ENST00000436336 ANKRD18BA2A2Z9 1011 aa28.48■■■□□ 2.15
CPSF4-204ENST00000436336 APBB1O00213 710 aa28.48■■■□□ 2.15
CPSF4-204ENST00000436336 ITGA6P23229 1130 aa28.48■■■□□ 2.15
CPSF4-204ENST00000436336 ST5P78524 1137 aa28.48■■■□□ 2.15
CPSF4-204ENST00000436336 ILDR2Q71H61 639 aa28.48■■■□□ 2.15
CPSF4-204ENST00000436336 ERC1Q8IUD2 1116 aa28.48■■■□□ 2.15
CPSF4-204ENST00000436336 MMP10P09238 476 aa28.47■■■□□ 2.15
CPSF4-204ENST00000436336 OS9Q13438 667 aaPredicted RBP28.47■■■□□ 2.15
CPSF4-204ENST00000436336 MSL1Q68DK7 614 aa28.47■■■□□ 2.15
CPSF4-204ENST00000436336 LNPKQ9C0E8 428 aa28.47■■■□□ 2.15
CPSF4-204ENST00000436336 PARP3Q9Y6F1 533 aa28.47■■■□□ 2.15
CPSF4-204ENST00000436336 SPEF2Q9C093 1822 aa28.47■■■□□ 2.15
CPSF4-204ENST00000436336 KIF1BPQ96EK5 621 aa28.46■■■□□ 2.15
CPSF4-204ENST00000436336 ANKRD31Q8N7Z5 1873 aa28.46■■■□□ 2.15
CPSF4-204ENST00000436336 SIL1Q9H173 461 aa28.46■■■□□ 2.15
CPSF4-204ENST00000436336 FBXO3Q9UK99 471 aa28.46■■■□□ 2.15
CPSF4-204ENST00000436336 CCDC24Q8N4L8 307 aa28.45■■■□□ 2.14
CPSF4-204ENST00000436336 RHPN1Q8TCX5 695 aa28.45■■■□□ 2.14
CPSF4-204ENST00000436336 PDGFDQ9GZP0 370 aaPredicted RBP28.45■■■□□ 2.14
CPSF4-204ENST00000436336 TAF7LQ5H9L4 462 aa28.44■■■□□ 2.14
CPSF4-204ENST00000436336 SKAP1Q86WV1 359 aa28.44■■■□□ 2.14
CPSF4-204ENST00000436336 ZNF594Q96JF6 807 aaPredicted RBP28.44■■■□□ 2.14
CPSF4-204ENST00000436336 LRP5O75197 1615 aa28.44■■■□□ 2.14
CPSF4-204ENST00000436336 C3orf67Q6ZVT6 689 aa28.43■■■□□ 2.14
CPSF4-204ENST00000436336 TAF1P21675 1872 aa28.43■■■□□ 2.14
CPSF4-204ENST00000436336 SMARCA5O60264 1052 aaPredicted RBP28.43■■■□□ 2.14
CPSF4-204ENST00000436336 CIAO1O76071 339 aa28.43■■■□□ 2.14
CPSF4-204ENST00000436336 EYA2O00167 538 aa28.42■■■□□ 2.14
CPSF4-204ENST00000436336 PDE4AP27815 886 aa28.41■■■□□ 2.14
CPSF4-204ENST00000436336 SASH1O94885 1247 aa28.4■■■□□ 2.14
CPSF4-204ENST00000436336 RGS3P49796 1198 aa28.4■■■□□ 2.14
CPSF4-204ENST00000436336 IL15P40933 162 aaPredicted RBP28.4■■■□□ 2.14
CPSF4-204ENST00000436336 SEC31BQ9NQW1 1179 aa28.4■■■□□ 2.14
CPSF4-204ENST00000436336 ATG9AQ7Z3C6 839 aa28.39■■■□□ 2.14
CPSF4-204ENST00000436336 CDC5LQ99459 802 aaKnown RBP28.38■■■□□ 2.13
CPSF4-204ENST00000436336 IL1RAPL2Q9NP60 686 aa28.38■■■□□ 2.13
CPSF4-204ENST00000436336 LRRC24Q50LG9 513 aa28.38■■■□□ 2.13
CPSF4-204ENST00000436336 LDHAL6AQ6ZMR3 332 aa28.38■■■□□ 2.13
CPSF4-204ENST00000436336 PUS3Q9BZE2 481 aaKnown RBP28.38■■■□□ 2.13
CPSF4-204ENST00000436336 R3HDM1Q15032 1099 aaKnown RBP28.37■■■□□ 2.13
CPSF4-204ENST00000436336 BRIP1Q9BX63 1249 aa28.37■■■□□ 2.13
CPSF4-204ENST00000436336 IGHMBP2P38935 993 aaKnown RBP28.36■■■□□ 2.13
CPSF4-204ENST00000436336 CLASRPQ8N2M8 674 aaKnown RBP28.36■■■□□ 2.13
CPSF4-204ENST00000436336 COL4A1P02462 1669 aa28.36■■■□□ 2.13
CPSF4-204ENST00000436336 KLRG2A4D1S0 409 aaPredicted RBP28.35■■■□□ 2.13
CPSF4-204ENST00000436336 CRY2Q49AN0 593 aa28.35■■■□□ 2.13
CPSF4-204ENST00000436336 A0A1B0GUL6 1792 aa28.35■■■□□ 2.13
CPSF4-204ENST00000436336 DDX46Q7L014 1031 aaKnown RBP28.35■■■□□ 2.13
CPSF4-204ENST00000436336 C16orf71Q8IYS4 520 aaPredicted RBP28.35■■■□□ 2.13
CPSF4-204ENST00000436336 MPHOSPH8Q99549 860 aa28.35■■■□□ 2.13
CPSF4-204ENST00000436336 BCL11AQ9H165 835 aa28.35■■■□□ 2.13
CPSF4-204ENST00000436336 CNNM1Q9NRU3 951 aa28.35■■■□□ 2.13
CPSF4-204ENST00000436336 RIPOR2Q9Y4F9 1068 aa28.35■■■□□ 2.13
CPSF4-204ENST00000436336 TFCP2Q12800 502 aa28.34■■■□□ 2.13
CPSF4-204ENST00000436336 ANKRD18AQ8IVF6 992 aa28.34■■■□□ 2.13
CPSF4-204ENST00000436336 PELP1Q8IZL8 1130 aaKnown RBP28.34■■■□□ 2.13
CPSF4-204ENST00000436336 MTFR1LQ9H019 292 aa28.32■■■□□ 2.12
CPSF4-204ENST00000436336 COL11A2P13942 1736 aaPredicted RBP28.32■■■□□ 2.12
CPSF4-204ENST00000436336 PDE6BP35913 854 aa28.32■■■□□ 2.12
CPSF4-204ENST00000436336 RPGRQ92834 1020 aaKnown RBP28.32■■■□□ 2.12
CPSF4-204ENST00000436336 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP28.32■■■□□ 2.12
CPSF4-204ENST00000436336 PLEKHM2Q8IWE5 1019 aa28.31■■■□□ 2.12
CPSF4-204ENST00000436336 GPR108Q9NPR9 543 aa28.31■■■□□ 2.12
CPSF4-204ENST00000436336 CEP126Q9P2H0 1117 aa28.31■■■□□ 2.12
CPSF4-204ENST00000436336 SALL3Q9BXA9 1300 aa28.31■■■□□ 2.12
CPSF4-204ENST00000436336 OTUD7AQ8TE49 926 aaPredicted RBP28.3■■■□□ 2.12
CPSF4-204ENST00000436336 CELF1Q92879 486 aaKnown RBP28.3■■■□□ 2.12
CPSF4-204ENST00000436336 MROH5Q6ZUA9 1318 aa28.3■■■□□ 2.12
CPSF4-204ENST00000436336 RPS8P62241 208 aaKnown RBP28.29■■■□□ 2.12
CPSF4-204ENST00000436336 RBM17Q96I25 401 aaKnown RBP28.29■■■□□ 2.12
CPSF4-204ENST00000436336 BSDC1Q9NW68 430 aaPredicted RBP28.29■■■□□ 2.12
CPSF4-204ENST00000436336 KIF13BQ9NQT8 1826 aa28.29■■■□□ 2.12
CPSF4-204ENST00000436336 ZBTB7AO95365 584 aa28.29■■■□□ 2.12
CPSF4-204ENST00000436336 TNNI3KQ59H18 835 aa28.29■■■□□ 2.12
CPSF4-204ENST00000436336 METTL24Q5JXM2 366 aa28.29■■■□□ 2.12
CPSF4-204ENST00000436336 AACSQ86V21 672 aa28.29■■■□□ 2.12
CPSF4-204ENST00000436336 EAF2Q96CJ1 260 aaPredicted RBP28.29■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms