RNA–Protein interactions for RNA: ENST00000409958.6

VSX1-204, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best)

Gene VSX1, Length 1,305 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-204ENST00000409958 BEND3Q5T5X7 828 aa26.4■■□□□ 1.82
VSX1-204ENST00000409958 ATP6V0A2Q9Y487 856 aa26.39■■□□□ 1.82
VSX1-204ENST00000409958 PTPRCP08575 1304 aa26.39■■□□□ 1.82
VSX1-204ENST00000409958 CCDC88AQ3V6T2 1871 aa26.39■■□□□ 1.82
VSX1-204ENST00000409958 TMX4Q9H1E5 349 aaPredicted RBP26.39■■□□□ 1.81
VSX1-204ENST00000409958 GPBP1L1Q9HC44 474 aaPredicted RBP26.39■■□□□ 1.81
VSX1-204ENST00000409958 UBE3BQ7Z3V4 1068 aa26.38■■□□□ 1.81
VSX1-204ENST00000409958 TMC4Q7Z404 712 aa26.38■■□□□ 1.81
VSX1-204ENST00000409958 PSMD1Q99460 953 aa26.38■■□□□ 1.81
VSX1-204ENST00000409958 BCL2L13Q9BXK5 485 aa26.38■■□□□ 1.81
VSX1-204ENST00000409958 SMC4Q9NTJ3 1288 aa26.38■■□□□ 1.81
VSX1-204ENST00000409958 ZBED9Q6R2W3 1325 aa26.37■■□□□ 1.81
VSX1-204ENST00000409958 CCDC152Q4G0S7 254 aa26.37■■□□□ 1.81
VSX1-204ENST00000409958 SP8Q8IXZ3 490 aa26.37■■□□□ 1.81
VSX1-204ENST00000409958 DICER1Q9UPY3 1922 aaKnown RBP26.35■■□□□ 1.81
VSX1-204ENST00000409958 CASP7P55210 303 aa26.35■■□□□ 1.81
VSX1-204ENST00000409958 CTSWP56202 376 aa26.35■■□□□ 1.81
VSX1-204ENST00000409958 SLC4A10Q6U841 1118 aa26.35■■□□□ 1.81
VSX1-204ENST00000409958 CELF1Q92879 486 aaKnown RBP26.35■■□□□ 1.81
VSX1-204ENST00000409958 ALDH1L1O75891 902 aa26.34■■□□□ 1.81
VSX1-204ENST00000409958 TAF1P21675 1872 aa26.34■■□□□ 1.81
VSX1-204ENST00000409958 BRPF1P55201 1214 aaPredicted RBP26.34■■□□□ 1.81
VSX1-204ENST00000409958 SLC51AQ86UW1 340 aa26.34■■□□□ 1.81
VSX1-204ENST00000409958 PLA2G12BQ9BX93 195 aa26.34■■□□□ 1.81
VSX1-204ENST00000409958 SRCIN1Q9C0H9 1055 aa26.34■■□□□ 1.81
VSX1-204ENST00000409958 ZNF277Q9NRM2 450 aaPredicted RBP26.34■■□□□ 1.81
VSX1-204ENST00000409958 RARSP54136 660 aaKnown RBP26.32■■□□□ 1.8
VSX1-204ENST00000409958 RPS8P62241 208 aaKnown RBP26.32■■□□□ 1.8
VSX1-204ENST00000409958 TTLL11Q8NHH1 800 aa26.32■■□□□ 1.8
VSX1-204ENST00000409958 SEC31BQ9NQW1 1179 aa26.32■■□□□ 1.8
VSX1-204ENST00000409958 TIAM2Q8IVF5 1701 aa26.32■■□□□ 1.8
VSX1-204ENST00000409958 IARSP41252 1262 aaKnown RBP26.31■■□□□ 1.8
VSX1-204ENST00000409958 MYH3P11055 1940 aa26.3■■□□□ 1.8
VSX1-204ENST00000409958 CCDC85AQ96PX6 553 aaPredicted RBP26.3■■□□□ 1.8
VSX1-204ENST00000409958 KDM2BQ8NHM5 1336 aa26.3■■□□□ 1.8
VSX1-204ENST00000409958 RTL9Q8NET4 1388 aa26.3■■□□□ 1.8
VSX1-204ENST00000409958 GRM8O00222 908 aa26.29■■□□□ 1.8
VSX1-204ENST00000409958 MPNDQ8N594 471 aa26.29■■□□□ 1.8
VSX1-204ENST00000409958 RTFDC1Q9BY42 306 aaPredicted RBP26.29■■□□□ 1.8
VSX1-204ENST00000409958 COL4A1P02462 1669 aa26.28■■□□□ 1.8
VSX1-204ENST00000409958 LRRC37AA6NMS7 1700 aa26.28■■□□□ 1.8
VSX1-204ENST00000409958 GLTPD2A6NH11 291 aa26.28■■□□□ 1.8
VSX1-204ENST00000409958 DPP8Q6V1X1 898 aaPredicted RBP26.28■■□□□ 1.8
VSX1-204ENST00000409958 SUPT20HQ8NEM7 779 aa26.28■■□□□ 1.8
VSX1-204ENST00000409958 C9orf78Q9NZ63 289 aaPredicted RBP26.28■■□□□ 1.8
VSX1-204ENST00000409958 CDC5LQ99459 802 aaKnown RBP26.27■■□□□ 1.8
VSX1-204ENST00000409958 VPS33BQ9H267 617 aa26.27■■□□□ 1.8
VSX1-204ENST00000409958 GREM2Q9H772 168 aa26.27■■□□□ 1.8
VSX1-204ENST00000409958 NMRK2Q9NPI5 230 aa26.27■■□□□ 1.8
VSX1-204ENST00000409958 NOB1Q9ULX3 412 aaKnown RBP26.27■■□□□ 1.8
VSX1-204ENST00000409958 CSF1RP07333 972 aa26.26■■□□□ 1.79
VSX1-204ENST00000409958 C1QTNF8P60827 252 aa26.26■■□□□ 1.79
VSX1-204ENST00000409958 DPY19L2Q6NUT2 758 aa26.26■■□□□ 1.79
VSX1-204ENST00000409958 ANKRD18AQ8IVF6 992 aa26.26■■□□□ 1.79
VSX1-204ENST00000409958 KIF16BQ96L93 1317 aa26.24■■□□□ 1.79
VSX1-204ENST00000409958 JDP2Q8WYK2 163 aa26.24■■□□□ 1.79
VSX1-204ENST00000409958 API5Q9BZZ5 524 aaKnown RBP26.24■■□□□ 1.79
VSX1-204ENST00000409958 UTYO14607 1347 aa26.23■■□□□ 1.79
VSX1-204ENST00000409958 KIF3CO14782 793 aa26.23■■□□□ 1.79
VSX1-204ENST00000409958 LARGE2Q8N3Y3 721 aa26.23■■□□□ 1.79
VSX1-204ENST00000409958 NSFL1CQ9UNZ2 370 aaKnown RBP26.23■■□□□ 1.79
VSX1-204ENST00000409958 PPIP5K2O43314 1243 aa26.22■■□□□ 1.79
VSX1-204ENST00000409958 FOXO4P98177 505 aa26.22■■□□□ 1.79
VSX1-204ENST00000409958 ARHGAP45Q92619 1136 aa26.22■■□□□ 1.79
VSX1-204ENST00000409958 FZD9O00144 591 aa26.21■■□□□ 1.79
VSX1-204ENST00000409958 ITGA6P23229 1130 aa26.21■■□□□ 1.79
VSX1-204ENST00000409958 GPSM2P81274 684 aa26.21■■□□□ 1.79
VSX1-204ENST00000409958 FAM161AQ3B820 660 aa26.21■■□□□ 1.79
VSX1-204ENST00000409958 DUOX1Q9NRD9 1551 aa26.2■■□□□ 1.79
VSX1-204ENST00000409958 AOC3Q16853 763 aa26.2■■□□□ 1.79
VSX1-204ENST00000409958 BSDC1Q9NW68 430 aaPredicted RBP26.2■■□□□ 1.79
VSX1-204ENST00000409958 PODXL2Q9NZ53 605 aa26.2■■□□□ 1.79
VSX1-204ENST00000409958 COL4A5P29400 1685 aa26.2■■□□□ 1.78
VSX1-204ENST00000409958 NBPF7P0C2Y1 421 aaPredicted RBP26.19■■□□□ 1.78
VSX1-204ENST00000409958 CCT4P50991 539 aaKnown RBP26.19■■□□□ 1.78
VSX1-204ENST00000409958 KIAA2012Q0VF49 1180 aa26.19■■□□□ 1.78
VSX1-204ENST00000409958 EPHA10Q5JZY3 1008 aa26.19■■□□□ 1.78
VSX1-204ENST00000409958 RRAGCQ9HB90 399 aa26.19■■□□□ 1.78
VSX1-204ENST00000409958 BCAR3O75815 825 aa26.18■■□□□ 1.78
VSX1-204ENST00000409958 IGHMBP2P38935 993 aaKnown RBP26.18■■□□□ 1.78
VSX1-204ENST00000409958 LMBR1LQ6UX01 489 aa26.18■■□□□ 1.78
VSX1-204ENST00000409958 NIM1KQ8IY84 436 aa26.18■■□□□ 1.78
VSX1-204ENST00000409958 ZNF541Q9H0D2 1346 aa26.18■■□□□ 1.78
VSX1-204ENST00000409958 ANKRD18BA2A2Z9 1011 aa26.17■■□□□ 1.78
VSX1-204ENST00000409958 IPO8O15397 1037 aaKnown RBP26.17■■□□□ 1.78
VSX1-204ENST00000409958 DDNO94850 711 aaPredicted RBP26.17■■□□□ 1.78
VSX1-204ENST00000409958 LTBP1Q14766 1721 aa26.17■■□□□ 1.78
VSX1-204ENST00000409958 SUCLG2Q96I99 432 aa26.17■■□□□ 1.78
VSX1-204ENST00000409958 USP44Q9H0E7 712 aa26.17■■□□□ 1.78
VSX1-204ENST00000409958 POLLQ9UGP5 575 aa26.17■■□□□ 1.78
VSX1-204ENST00000409958 WDR90Q96KV7 1748 aa26.17■■□□□ 1.78
VSX1-204ENST00000409958 C6orf229H3BNL8 230 aa26.16■■□□□ 1.78
VSX1-204ENST00000409958 EIF6P56537 245 aaKnown RBP26.16■■□□□ 1.78
VSX1-204ENST00000409958 IFIT5Q13325 482 aaKnown RBP26.16■■□□□ 1.78
VSX1-204ENST00000409958 TBC1D16Q8TBP0 767 aa26.16■■□□□ 1.78
VSX1-204ENST00000409958 KAZALD1Q96I82 304 aa26.16■■□□□ 1.78
VSX1-204ENST00000409958 ANKIB1Q9P2G1 1089 aa26.16■■□□□ 1.78
VSX1-204ENST00000409958 VEGFAP15692 232 aaPredicted RBP26.15■■□□□ 1.78
VSX1-204ENST00000409958 WASHC4Q2M389 1173 aa26.15■■□□□ 1.78
VSX1-204ENST00000409958 EYA3Q99504 573 aa26.15■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms