RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 PHF14O94880 888 aa17.26■□□□□ 0.35
GPNMB-203ENST00000409458 IFIT2P09913 472 aaKnown RBP17.26■□□□□ 0.35
GPNMB-203ENST00000409458 ANP32AP39687 249 aaKnown RBP17.26■□□□□ 0.35
GPNMB-203ENST00000409458 TFCP2Q12800 502 aa17.26■□□□□ 0.35
GPNMB-203ENST00000409458 CCDC57Q2TAC2 916 aa17.26■□□□□ 0.35
GPNMB-203ENST00000409458 TLR7Q9NYK1 1049 aaKnown RBP17.26■□□□□ 0.35
GPNMB-203ENST00000409458 TTC41PQ6P2S7 1318 aa17.25■□□□□ 0.35
GPNMB-203ENST00000409458 MFAP1P55081 439 aaKnown RBP17.25■□□□□ 0.35
GPNMB-203ENST00000409458 TBC1D9BQ66K14 1250 aa17.25■□□□□ 0.35
GPNMB-203ENST00000409458 GREM2Q9H772 168 aa17.25■□□□□ 0.35
GPNMB-203ENST00000409458 AK9Q5TCS8 1911 aa17.25■□□□□ 0.35
GPNMB-203ENST00000409458 EYA2O00167 538 aa17.24■□□□□ 0.35
GPNMB-203ENST00000409458 ZPR1O75312 459 aa17.24■□□□□ 0.35
GPNMB-203ENST00000409458 HCLS1P14317 486 aaPredicted RBP17.24■□□□□ 0.35
GPNMB-203ENST00000409458 IFIT5Q13325 482 aaKnown RBP17.24■□□□□ 0.35
GPNMB-203ENST00000409458 LRRC24Q50LG9 513 aa17.24■□□□□ 0.35
GPNMB-203ENST00000409458 PROM2Q8N271 834 aa17.24■□□□□ 0.35
GPNMB-203ENST00000409458 CCDC8Q9H0W5 538 aaPredicted RBP17.24■□□□□ 0.35
GPNMB-203ENST00000409458 CIAO1O76071 339 aa17.23■□□□□ 0.35
GPNMB-203ENST00000409458 ITGA6P23229 1130 aa17.23■□□□□ 0.35
GPNMB-203ENST00000409458 IL15P40933 162 aaPredicted RBP17.23■□□□□ 0.35
GPNMB-203ENST00000409458 TXNRD1Q16881 649 aa17.23■□□□□ 0.35
GPNMB-203ENST00000409458 TNNI3KQ59H18 835 aa17.23■□□□□ 0.35
GPNMB-203ENST00000409458 BICDL1Q6ZP65 573 aa17.23■□□□□ 0.35
GPNMB-203ENST00000409458 PUS3Q9BZE2 481 aaKnown RBP17.23■□□□□ 0.35
GPNMB-203ENST00000409458 FPGT-TNNI3KV9GXZ4 949 aa17.23■□□□□ 0.35
GPNMB-203ENST00000409458 TRAPPC3LQ5T215 181 aa17.23■□□□□ 0.35
GPNMB-203ENST00000409458 GPATCH3Q96I76 525 aa17.23■□□□□ 0.35
GPNMB-203ENST00000409458 ECHDC1Q9NTX5 307 aa17.23■□□□□ 0.35
GPNMB-203ENST00000409458 ZNF609O15014 1411 aa17.22■□□□□ 0.35
GPNMB-203ENST00000409458 RGPD3A6NKT7 1758 aaPredicted RBP17.22■□□□□ 0.35
GPNMB-203ENST00000409458 RGPD4Q7Z3J3 1758 aa17.22■□□□□ 0.35
GPNMB-203ENST00000409458 TRIM6-TRIM34B2RNG4 842 aa17.22■□□□□ 0.35
GPNMB-203ENST00000409458 RFC4P35249 363 aa17.22■□□□□ 0.35
GPNMB-203ENST00000409458 TAF7LQ5H9L4 462 aa17.22■□□□□ 0.35
GPNMB-203ENST00000409458 UPF2Q9HAU5 1272 aaKnown RBP17.22■□□□□ 0.35
GPNMB-203ENST00000409458 RIC1Q4ADV7 1423 aa17.22■□□□□ 0.35
GPNMB-203ENST00000409458 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.21■□□□□ 0.35
GPNMB-203ENST00000409458 ANKRD18BA2A2Z9 1011 aa17.21■□□□□ 0.35
GPNMB-203ENST00000409458 GLRX3O76003 335 aaKnown RBP17.21■□□□□ 0.35
GPNMB-203ENST00000409458 MAP4K4O95819 1239 aaPredicted RBP17.21■□□□□ 0.35
GPNMB-203ENST00000409458 APBA3O96018 575 aa17.21■□□□□ 0.35
GPNMB-203ENST00000409458 ADRA2BP18089 450 aa17.21■□□□□ 0.35
GPNMB-203ENST00000409458 TBC1D32Q96NH3 1257 aa17.21■□□□□ 0.35
GPNMB-203ENST00000409458 SPEF2Q9C093 1822 aa17.21■□□□□ 0.35
GPNMB-203ENST00000409458 ABCC12Q96J65 1359 aa17.21■□□□□ 0.35
GPNMB-203ENST00000409458 PLSCR1O15162 318 aa17.2■□□□□ 0.34
GPNMB-203ENST00000409458 ERFEQ4G0M1 354 aa17.2■□□□□ 0.34
GPNMB-203ENST00000409458 RILPL2Q969X0 211 aa17.2■□□□□ 0.34
GPNMB-203ENST00000409458 DBNLQ9UJU6 430 aaKnown RBP17.2■□□□□ 0.34
GPNMB-203ENST00000409458 FBXO3Q9UK99 471 aa17.2■□□□□ 0.34
GPNMB-203ENST00000409458 ERC2O15083 957 aa17.2■□□□□ 0.34
GPNMB-203ENST00000409458 SSFA2P28290 1259 aa17.19■□□□□ 0.34
GPNMB-203ENST00000409458 SETDB2Q96T68 719 aa17.19■□□□□ 0.34
GPNMB-203ENST00000409458 GPR108Q9NPR9 543 aa17.19■□□□□ 0.34
GPNMB-203ENST00000409458 COL4A1P02462 1669 aa17.19■□□□□ 0.34
GPNMB-203ENST00000409458 HSP90B1P14625 803 aaKnown RBP17.18■□□□□ 0.34
GPNMB-203ENST00000409458 CASC1Q6TDU7 716 aa17.18■□□□□ 0.34
GPNMB-203ENST00000409458 DBNDD2Q9BQY9 259 aa17.18■□□□□ 0.34
GPNMB-203ENST00000409458 RTL9Q8NET4 1388 aa17.18■□□□□ 0.34
GPNMB-203ENST00000409458 ZNF827Q17R98 1081 aa17.17■□□□□ 0.34
GPNMB-203ENST00000409458 C3orf67Q6ZVT6 689 aa17.17■□□□□ 0.34
GPNMB-203ENST00000409458 C22orf23Q9BZE7 217 aa17.17■□□□□ 0.34
GPNMB-203ENST00000409458 TNRC6CQ9HCJ0 1690 aaKnown RBP17.17■□□□□ 0.34
GPNMB-203ENST00000409458 CCDC152Q4G0S7 254 aa17.16■□□□□ 0.34
GPNMB-203ENST00000409458 LDHAL6AQ6ZMR3 332 aa17.16■□□□□ 0.34
GPNMB-203ENST00000409458 NBPF5PQ86XG9 351 aaPredicted RBP17.16■□□□□ 0.34
GPNMB-203ENST00000409458 CNTROBQ8N137 903 aa17.16■□□□□ 0.34
GPNMB-203ENST00000409458 NYXQ9GZU5 481 aa17.16■□□□□ 0.34
GPNMB-203ENST00000409458 CEP126Q9P2H0 1117 aa17.16■□□□□ 0.34
GPNMB-203ENST00000409458 RIPOR2Q9Y4F9 1068 aa17.16■□□□□ 0.34
GPNMB-203ENST00000409458 CHMLP26374 656 aa17.16■□□□□ 0.34
GPNMB-203ENST00000409458 IPO9Q96P70 1041 aaKnown RBP17.16■□□□□ 0.34
GPNMB-203ENST00000409458 SEC31BQ9NQW1 1179 aa17.16■□□□□ 0.34
GPNMB-203ENST00000409458 CARMIL3Q8ND23 1372 aa17.15■□□□□ 0.34
GPNMB-203ENST00000409458 A0A1B0GUL7 405 aa17.15■□□□□ 0.34
GPNMB-203ENST00000409458 GYS1P13807 737 aa17.15■□□□□ 0.34
GPNMB-203ENST00000409458 NFIXQ14938 502 aa17.15■□□□□ 0.34
GPNMB-203ENST00000409458 AKT1S1Q96B36 256 aa17.15■□□□□ 0.34
GPNMB-203ENST00000409458 BOLA2Q9H3K6 86 aa17.15■□□□□ 0.34
GPNMB-203ENST00000409458 CNNM1Q9NRU3 951 aa17.15■□□□□ 0.34
GPNMB-203ENST00000409458 GTF2E1P29083 439 aaPredicted RBP17.14■□□□□ 0.33
GPNMB-203ENST00000409458 TIMM10P62072 90 aa17.14■□□□□ 0.33
GPNMB-203ENST00000409458 METTL24Q5JXM2 366 aa17.14■□□□□ 0.33
GPNMB-203ENST00000409458 SLC10A5Q5PT55 438 aa17.14■□□□□ 0.33
GPNMB-203ENST00000409458 NEUROD6Q96NK8 337 aa17.14■□□□□ 0.33
GPNMB-203ENST00000409458 ARAP2Q8WZ64 1704 aa17.14■□□□□ 0.33
GPNMB-203ENST00000409458 A0A1B0GUL6 1792 aa17.14■□□□□ 0.33
GPNMB-203ENST00000409458 ATP5JP18859 108 aa17.13■□□□□ 0.33
GPNMB-203ENST00000409458 HMGB2P26583 209 aaKnown RBP17.13■□□□□ 0.33
GPNMB-203ENST00000409458 VGLL2Q8N8G2 317 aa17.13■□□□□ 0.33
GPNMB-203ENST00000409458 TAF1P21675 1872 aa17.13■□□□□ 0.33
GPNMB-203ENST00000409458 RBM25P49756 843 aaKnown RBP17.13■□□□□ 0.33
GPNMB-203ENST00000409458 SF3B3Q15393 1217 aaKnown RBP17.13■□□□□ 0.33
GPNMB-203ENST00000409458 CCDC24Q8N4L8 307 aa17.13■□□□□ 0.33
GPNMB-203ENST00000409458 ESYT1Q9BSJ8 1104 aa17.13■□□□□ 0.33
GPNMB-203ENST00000409458 AKAP2Q9Y2D5 859 aa17.13■□□□□ 0.33
GPNMB-203ENST00000409458 EIF5BO60841 1220 aaKnown RBP17.12■□□□□ 0.33
GPNMB-203ENST00000409458 ADORA1P30542 326 aa17.12■□□□□ 0.33
GPNMB-203ENST00000409458 TPTE2Q6XPS3 522 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms