RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 ELP1O95163 1332 aa16.16■□□□□ 0.18
SYNE3-201ENST00000334258 H3BQV1 296 aa16.16■□□□□ 0.18
SYNE3-201ENST00000334258 IFFO2Q5TF58 517 aa16.16■□□□□ 0.18
SYNE3-201ENST00000334258 ARHGEF10O15013 1369 aa16.16■□□□□ 0.18
SYNE3-201ENST00000334258 IRX3P78415 501 aaPredicted RBP16.16■□□□□ 0.18
SYNE3-201ENST00000334258 POLA2Q14181 598 aa16.16■□□□□ 0.18
SYNE3-201ENST00000334258 LGR6Q9HBX8 967 aa16.16■□□□□ 0.18
SYNE3-201ENST00000334258 CCDC171Q6TFL3 1326 aa16.16■□□□□ 0.18
SYNE3-201ENST00000334258 FAM227BQ96M60 508 aa16.16■□□□□ 0.18
SYNE3-201ENST00000334258 KDM4FA0A1W2PPD8 638 aa16.15■□□□□ 0.18
SYNE3-201ENST00000334258 USP27XA6NNY8 438 aa16.15■□□□□ 0.18
SYNE3-201ENST00000334258 ZNF397Q8NF99 534 aaPredicted RBP16.15■□□□□ 0.18
SYNE3-201ENST00000334258 DDX11Q96FC9 970 aa16.15■□□□□ 0.18
SYNE3-201ENST00000334258 PI4KAP2A4QPH2 592 aa16.15■□□□□ 0.18
SYNE3-201ENST00000334258 FOSBP53539 338 aa16.15■□□□□ 0.18
SYNE3-201ENST00000334258 RNF20Q5VTR2 975 aa16.15■□□□□ 0.18
SYNE3-201ENST00000334258 AACSQ86V21 672 aa16.15■□□□□ 0.18
SYNE3-201ENST00000334258 LRRC8AQ8IWT6 810 aa16.15■□□□□ 0.18
SYNE3-201ENST00000334258 PI4KAP1Q8N8J0 262 aa16.15■□□□□ 0.18
SYNE3-201ENST00000334258 C19orf44Q9H6X5 657 aa16.15■□□□□ 0.18
SYNE3-201ENST00000334258 USP16Q9Y5T5 823 aa16.15■□□□□ 0.18
SYNE3-201ENST00000334258 MORC2Q9Y6X9 1032 aaPredicted RBP16.15■□□□□ 0.18
SYNE3-201ENST00000334258 TTC41PQ6P2S7 1318 aa16.15■□□□□ 0.18
SYNE3-201ENST00000334258 HTATSF1O43719 755 aaKnown RBP16.14■□□□□ 0.18
SYNE3-201ENST00000334258 ANXA1P04083 346 aa16.14■□□□□ 0.18
SYNE3-201ENST00000334258 NECTIN1Q15223 517 aa16.14■□□□□ 0.18
SYNE3-201ENST00000334258 SLFN14P0C7P3 912 aa16.14■□□□□ 0.17
SYNE3-201ENST00000334258 ELF2Q15723 593 aa16.14■□□□□ 0.17
SYNE3-201ENST00000334258 KMT5BQ4FZB7 885 aa16.14■□□□□ 0.17
SYNE3-201ENST00000334258 PA2G4Q9UQ80 394 aaKnown RBP16.14■□□□□ 0.17
SYNE3-201ENST00000334258 MON2Q7Z3U7 1717 aa16.14■□□□□ 0.17
SYNE3-201ENST00000334258 HSP90B1P14625 803 aaKnown RBP16.14■□□□□ 0.17
SYNE3-201ENST00000334258 COL9A3Q14050 684 aaPredicted RBP16.14■□□□□ 0.17
SYNE3-201ENST00000334258 ANKRD1Q15327 319 aa16.14■□□□□ 0.17
SYNE3-201ENST00000334258 C9orf78Q9NZ63 289 aaPredicted RBP16.14■□□□□ 0.17
SYNE3-201ENST00000334258 SBNO1A3KN83 1393 aa16.14■□□□□ 0.17
SYNE3-201ENST00000334258 ZNF335Q9H4Z2 1342 aaPredicted RBP16.14■□□□□ 0.17
SYNE3-201ENST00000334258 CCDC66A2RUB6 948 aa16.13■□□□□ 0.17
SYNE3-201ENST00000334258 TERF2Q15554 542 aa16.13■□□□□ 0.17
SYNE3-201ENST00000334258 EVI5LQ96CN4 794 aa16.13■□□□□ 0.17
SYNE3-201ENST00000334258 PEAK1Q9H792 1746 aa16.13■□□□□ 0.17
SYNE3-201ENST00000334258 DNAAF4Q8WXU2 420 aa16.13■□□□□ 0.17
SYNE3-201ENST00000334258 PGBD1Q96JS3 809 aa16.13■□□□□ 0.17
SYNE3-201ENST00000334258 CCDC69A6NI79 296 aa16.13■□□□□ 0.17
SYNE3-201ENST00000334258 SLC27A2O14975 620 aa16.13■□□□□ 0.17
SYNE3-201ENST00000334258 KCNQ3O43525 872 aa16.13■□□□□ 0.17
SYNE3-201ENST00000334258 CSB-PGBD3P0DP91 1061 aa16.13■□□□□ 0.17
SYNE3-201ENST00000334258 NMIQ13287 307 aaPredicted RBP16.13■□□□□ 0.17
SYNE3-201ENST00000334258 IL17REQ8NFR9 667 aa16.13■□□□□ 0.17
SYNE3-201ENST00000334258 NLRP2Q9NX02 1062 aa16.13■□□□□ 0.17
SYNE3-201ENST00000334258 MAP3K5Q99683 1374 aa16.12■□□□□ 0.17
SYNE3-201ENST00000334258 RGS22Q8NE09 1264 aa16.12■□□□□ 0.17
SYNE3-201ENST00000334258 CHMP4CQ96CF2 233 aa16.12■□□□□ 0.17
SYNE3-201ENST00000334258 FSD1Q9BTV5 496 aa16.12■□□□□ 0.17
SYNE3-201ENST00000334258 USP31Q70CQ4 1352 aa16.12■□□□□ 0.17
SYNE3-201ENST00000334258 A0A087WWV3 80 aa16.12■□□□□ 0.17
SYNE3-201ENST00000334258 JAK2O60674 1132 aa16.11■□□□□ 0.17
SYNE3-201ENST00000334258 IRX5P78411 483 aaPredicted RBP16.11■□□□□ 0.17
SYNE3-201ENST00000334258 CCDC8Q9H0W5 538 aaPredicted RBP16.11■□□□□ 0.17
SYNE3-201ENST00000334258 AKAP12Q02952 1782 aa16.11■□□□□ 0.17
SYNE3-201ENST00000334258 NEMFO60524 1076 aa16.11■□□□□ 0.17
SYNE3-201ENST00000334258 FBXO38Q6PIJ6 1188 aa16.11■□□□□ 0.17
SYNE3-201ENST00000334258 BOLA2Q9H3K6 86 aa16.11■□□□□ 0.17
SYNE3-201ENST00000334258 C11orf57Q6ZUT1 292 aaPredicted RBP16.11■□□□□ 0.17
SYNE3-201ENST00000334258 BRF1Q92994 677 aa16.11■□□□□ 0.17
SYNE3-201ENST00000334258 CHPF2Q9P2E5 772 aa16.11■□□□□ 0.17
SYNE3-201ENST00000334258 ADAMTSL3P82987 1691 aa16.1■□□□□ 0.17
SYNE3-201ENST00000334258 CAVIN2O95810 425 aa16.1■□□□□ 0.17
SYNE3-201ENST00000334258 ANKRD24Q8TF21 1146 aa16.1■□□□□ 0.17
SYNE3-201ENST00000334258 MAP4K1Q92918 833 aa16.1■□□□□ 0.17
SYNE3-201ENST00000334258 ERO1AQ96HE7 468 aa16.1■□□□□ 0.17
SYNE3-201ENST00000334258 CFAP45Q9UL16 551 aa16.1■□□□□ 0.17
SYNE3-201ENST00000334258 SLU7O95391 586 aaKnown RBP16.09■□□□□ 0.17
SYNE3-201ENST00000334258 CCDC73Q6ZRK6 1079 aa16.09■□□□□ 0.17
SYNE3-201ENST00000334258 SYTL4Q96C24 671 aaPredicted RBP16.09■□□□□ 0.17
SYNE3-201ENST00000334258 ADGRL3Q9HAR2 1447 aa16.09■□□□□ 0.17
SYNE3-201ENST00000334258 RPS6KB1P23443 525 aa16.09■□□□□ 0.17
SYNE3-201ENST00000334258 ZRSR1Q15695 479 aaKnown RBP16.09■□□□□ 0.17
SYNE3-201ENST00000334258 ST7Q9NRC1 585 aa16.09■□□□□ 0.17
SYNE3-201ENST00000334258 TAF6LQ9Y6J9 622 aa16.09■□□□□ 0.17
SYNE3-201ENST00000334258 NALCNQ8IZF0 1738 aa16.09■□□□□ 0.17
SYNE3-201ENST00000334258 HIP1O00291 1037 aa16.09■□□□□ 0.17
SYNE3-201ENST00000334258 KINO60870 393 aaKnown RBP16.09■□□□□ 0.17
SYNE3-201ENST00000334258 STX1AQ16623 288 aa16.09■□□□□ 0.17
SYNE3-201ENST00000334258 IGSF1Q8N6C5 1336 aa16.09■□□□□ 0.17
SYNE3-201ENST00000334258 BEND3Q5T5X7 828 aa16.08■□□□□ 0.17
SYNE3-201ENST00000334258 RBM43Q6ZSC3 357 aaKnown RBP16.08■□□□□ 0.17
SYNE3-201ENST00000334258 CCAR1Q8IX12 1150 aaKnown RBP16.08■□□□□ 0.17
SYNE3-201ENST00000334258 IP6K1Q92551 441 aa16.08■□□□□ 0.17
SYNE3-201ENST00000334258 ERCC4Q92889 916 aaPredicted RBP16.08■□□□□ 0.17
SYNE3-201ENST00000334258 PIK3C2AO00443 1686 aa16.08■□□□□ 0.16
SYNE3-201ENST00000334258 ZNF530Q6P9A1 599 aaPredicted RBP16.08■□□□□ 0.16
SYNE3-201ENST00000334258 MRFAP1L1Q96HT8 127 aa16.08■□□□□ 0.16
SYNE3-201ENST00000334258 XRN1Q8IZH2 1706 aaKnown RBP16.08■□□□□ 0.16
SYNE3-201ENST00000334258 A0A0D9SFI3 127 aa16.07■□□□□ 0.16
SYNE3-201ENST00000334258 CDC25BP30305 580 aa16.07■□□□□ 0.16
SYNE3-201ENST00000334258 G3BP1Q13283 466 aaKnown RBP eCLIP16.07■□□□□ 0.16
SYNE3-201ENST00000334258 ERC1Q8IUD2 1116 aa16.07■□□□□ 0.16
SYNE3-201ENST00000334258 SIL1Q9H173 461 aa16.07■□□□□ 0.16
SYNE3-201ENST00000334258 IQCB1Q15051 598 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms