RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 LAMB2P55268 1798 aa17.78■□□□□ 0.44
LIMS1-201ENST00000332345 DDX60Q8IY21 1712 aaKnown RBP17.78■□□□□ 0.44
LIMS1-201ENST00000332345 FER1L6Q2WGJ9 1857 aa17.78■□□□□ 0.44
LIMS1-201ENST00000332345 ABCC4O15439 1325 aa17.77■□□□□ 0.44
LIMS1-201ENST00000332345 LTBP3Q9NS15 1303 aa17.77■□□□□ 0.44
LIMS1-201ENST00000332345 GRAPQ13588 217 aa17.77■□□□□ 0.44
LIMS1-201ENST00000332345 UBE3BQ7Z3V4 1068 aa17.77■□□□□ 0.44
LIMS1-201ENST00000332345 TMC4Q7Z404 712 aa17.77■□□□□ 0.44
LIMS1-201ENST00000332345 GRAPLQ8TC17 118 aaPredicted RBP17.77■□□□□ 0.44
LIMS1-201ENST00000332345 CCDC88AQ3V6T2 1871 aa17.77■□□□□ 0.43
LIMS1-201ENST00000332345 ALDH1L1O75891 902 aa17.76■□□□□ 0.43
LIMS1-201ENST00000332345 RARSP54136 660 aaKnown RBP17.76■□□□□ 0.43
LIMS1-201ENST00000332345 BRPF1P55201 1214 aaPredicted RBP17.76■□□□□ 0.43
LIMS1-201ENST00000332345 SP8Q8IXZ3 490 aa17.76■□□□□ 0.43
LIMS1-201ENST00000332345 SRCIN1Q9C0H9 1055 aa17.76■□□□□ 0.43
LIMS1-201ENST00000332345 ATP6V0A2Q9Y487 856 aa17.76■□□□□ 0.43
LIMS1-201ENST00000332345 FKBP4Q02790 459 aaKnown RBP eCLIP17.75■□□□□ 0.43
LIMS1-201ENST00000332345 OLFM4Q6UX06 510 aa17.75■□□□□ 0.43
LIMS1-201ENST00000332345 RPS8P62241 208 aaKnown RBP17.74■□□□□ 0.43
LIMS1-201ENST00000332345 PSMD1Q99460 953 aa17.74■□□□□ 0.43
LIMS1-201ENST00000332345 C9orf78Q9NZ63 289 aaPredicted RBP17.74■□□□□ 0.43
LIMS1-201ENST00000332345 NOB1Q9ULX3 412 aaKnown RBP17.74■□□□□ 0.43
LIMS1-201ENST00000332345 ZC3H4Q9UPT8 1303 aaKnown RBP17.73■□□□□ 0.43
LIMS1-201ENST00000332345 CTSWP56202 376 aa17.73■□□□□ 0.43
LIMS1-201ENST00000332345 TTLL11Q8NHH1 800 aa17.73■□□□□ 0.43
LIMS1-201ENST00000332345 PLA2G12BQ9BX93 195 aa17.73■□□□□ 0.43
LIMS1-201ENST00000332345 TAF1P21675 1872 aa17.72■□□□□ 0.43
LIMS1-201ENST00000332345 GRM8O00222 908 aa17.72■□□□□ 0.43
LIMS1-201ENST00000332345 PRELPP51888 382 aa17.72■□□□□ 0.43
LIMS1-201ENST00000332345 CASP7P55210 303 aa17.72■□□□□ 0.43
LIMS1-201ENST00000332345 CELF1Q92879 486 aaKnown RBP17.72■□□□□ 0.43
LIMS1-201ENST00000332345 API5Q9BZZ5 524 aaKnown RBP17.72■□□□□ 0.43
LIMS1-201ENST00000332345 GPBP1L1Q9HC44 474 aaPredicted RBP17.72■□□□□ 0.43
LIMS1-201ENST00000332345 MYH3P11055 1940 aa17.71■□□□□ 0.43
LIMS1-201ENST00000332345 IPO8O15397 1037 aaKnown RBP17.71■□□□□ 0.43
LIMS1-201ENST00000332345 MPNDQ8N594 471 aa17.71■□□□□ 0.43
LIMS1-201ENST00000332345 SUPT20HQ8NEM7 779 aa17.71■□□□□ 0.43
LIMS1-201ENST00000332345 ARHGAP45Q92619 1136 aa17.71■□□□□ 0.43
LIMS1-201ENST00000332345 CCDC85AQ96PX6 553 aaPredicted RBP17.71■□□□□ 0.43
LIMS1-201ENST00000332345 CDC5LQ99459 802 aaKnown RBP17.71■□□□□ 0.43
LIMS1-201ENST00000332345 SEC31BQ9NQW1 1179 aa17.71■□□□□ 0.43
LIMS1-201ENST00000332345 ZNF277Q9NRM2 450 aaPredicted RBP17.71■□□□□ 0.43
LIMS1-201ENST00000332345 KIF16BQ96L93 1317 aa17.71■□□□□ 0.42
LIMS1-201ENST00000332345 DICER1Q9UPY3 1922 aaKnown RBP17.7■□□□□ 0.42
LIMS1-201ENST00000332345 DPY19L2Q6NUT2 758 aa17.7■□□□□ 0.42
LIMS1-201ENST00000332345 DPP8Q6V1X1 898 aaPredicted RBP17.7■□□□□ 0.42
LIMS1-201ENST00000332345 ANKRD18AQ8IVF6 992 aa17.7■□□□□ 0.42
LIMS1-201ENST00000332345 ZNF526Q8TF50 670 aaPredicted RBP17.7■□□□□ 0.42
LIMS1-201ENST00000332345 VPS33BQ9H267 617 aa17.7■□□□□ 0.42
LIMS1-201ENST00000332345 CSF1RP07333 972 aa17.69■□□□□ 0.42
LIMS1-201ENST00000332345 IARSP41252 1262 aaKnown RBP17.69■□□□□ 0.42
LIMS1-201ENST00000332345 CCT4P50991 539 aaKnown RBP17.69■□□□□ 0.42
LIMS1-201ENST00000332345 KDM2BQ8NHM5 1336 aa17.69■□□□□ 0.42
LIMS1-201ENST00000332345 JDP2Q8WYK2 163 aa17.68■□□□□ 0.42
LIMS1-201ENST00000332345 GREM2Q9H772 168 aa17.68■□□□□ 0.42
LIMS1-201ENST00000332345 RTL9Q8NET4 1388 aa17.67■□□□□ 0.42
LIMS1-201ENST00000332345 BCAR3O75815 825 aa17.67■□□□□ 0.42
LIMS1-201ENST00000332345 FOXO4P98177 505 aa17.67■□□□□ 0.42
LIMS1-201ENST00000332345 RTFDC1Q9BY42 306 aaPredicted RBP17.67■□□□□ 0.42
LIMS1-201ENST00000332345 NSFL1CQ9UNZ2 370 aaKnown RBP17.67■□□□□ 0.42
LIMS1-201ENST00000332345 UTYO14607 1347 aa17.67■□□□□ 0.42
LIMS1-201ENST00000332345 SNED1Q8TER0 1413 aa17.66■□□□□ 0.42
LIMS1-201ENST00000332345 GLTPD2A6NH11 291 aa17.66■□□□□ 0.42
LIMS1-201ENST00000332345 ITGA6P23229 1130 aa17.66■□□□□ 0.42
LIMS1-201ENST00000332345 IGHMBP2P38935 993 aaKnown RBP17.66■□□□□ 0.42
LIMS1-201ENST00000332345 LARGE2Q8N3Y3 721 aa17.66■□□□□ 0.42
LIMS1-201ENST00000332345 FRAT1Q92837 279 aaPredicted RBP17.66■□□□□ 0.42
LIMS1-201ENST00000332345 ANKRD18BA2A2Z9 1011 aa17.65■□□□□ 0.42
LIMS1-201ENST00000332345 NBPF7P0C2Y1 421 aaPredicted RBP17.65■□□□□ 0.42
LIMS1-201ENST00000332345 IFIT5Q13325 482 aaKnown RBP17.65■□□□□ 0.42
LIMS1-201ENST00000332345 LMBR1LQ6UX01 489 aa17.65■□□□□ 0.42
LIMS1-201ENST00000332345 USP44Q9H0E7 712 aa17.65■□□□□ 0.42
LIMS1-201ENST00000332345 BSDC1Q9NW68 430 aaPredicted RBP17.65■□□□□ 0.42
LIMS1-201ENST00000332345 ANKIB1Q9P2G1 1089 aa17.65■□□□□ 0.42
LIMS1-201ENST00000332345 CHMP3Q9Y3E7 222 aa17.65■□□□□ 0.42
LIMS1-201ENST00000332345 PPIP5K2O43314 1243 aa17.64■□□□□ 0.41
LIMS1-201ENST00000332345 NPM3O75607 178 aaKnown RBP17.64■□□□□ 0.41
LIMS1-201ENST00000332345 GPSM2P81274 684 aa17.64■□□□□ 0.41
LIMS1-201ENST00000332345 CCDC57Q2TAC2 916 aa17.64■□□□□ 0.41
LIMS1-201ENST00000332345 SLC51AQ86UW1 340 aa17.64■□□□□ 0.41
LIMS1-201ENST00000332345 MPHOSPH8Q99549 860 aa17.64■□□□□ 0.41
LIMS1-201ENST00000332345 HDAC5Q9UQL6 1122 aa17.64■□□□□ 0.41
LIMS1-201ENST00000332345 C6orf229H3BNL8 230 aa17.63■□□□□ 0.41
LIMS1-201ENST00000332345 FZD9O00144 591 aa17.63■□□□□ 0.41
LIMS1-201ENST00000332345 FAM161AQ3B820 660 aa17.63■□□□□ 0.41
LIMS1-201ENST00000332345 ATF7IPQ6VMQ6 1270 aa17.63■□□□□ 0.41
LIMS1-201ENST00000332345 EYA3Q99504 573 aa17.63■□□□□ 0.41
LIMS1-201ENST00000332345 PODXL2Q9NZ53 605 aa17.63■□□□□ 0.41
LIMS1-201ENST00000332345 TIAM2Q8IVF5 1701 aa17.62■□□□□ 0.41
LIMS1-201ENST00000332345 EIF6P56537 245 aaKnown RBP17.62■□□□□ 0.41
LIMS1-201ENST00000332345 AOC3Q16853 763 aa17.62■□□□□ 0.41
LIMS1-201ENST00000332345 WASHC4Q2M389 1173 aa17.62■□□□□ 0.41
LIMS1-201ENST00000332345 EPHA10Q5JZY3 1008 aa17.62■□□□□ 0.41
LIMS1-201ENST00000332345 ZKSCAN2Q63HK3 967 aa17.62■□□□□ 0.41
LIMS1-201ENST00000332345 NIM1KQ8IY84 436 aa17.62■□□□□ 0.41
LIMS1-201ENST00000332345 SUCLG2Q96I99 432 aa17.62■□□□□ 0.41
LIMS1-201ENST00000332345 RRAGCQ9HB90 399 aa17.62■□□□□ 0.41
LIMS1-201ENST00000332345 MINPP1Q9UNW1 487 aa17.62■□□□□ 0.41
LIMS1-201ENST00000332345 KIAA2012Q0VF49 1180 aa17.61■□□□□ 0.41
LIMS1-201ENST00000332345 TAF7LQ5H9L4 462 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms