RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ANO6Q4KMQ2 910 aa13.25□□□□□ -0.29
VPS39-201ENST00000318006 FKBP15Q5T1M5 1219 aa13.25□□□□□ -0.29
VPS39-201ENST00000318006 TSPYL6Q8N831 410 aa13.25□□□□□ -0.29
VPS39-201ENST00000318006 ATP7AQ04656 1500 aa13.24□□□□□ -0.29
VPS39-201ENST00000318006 MCM6Q14566 821 aa13.24□□□□□ -0.29
VPS39-201ENST00000318006 CNNM3Q8NE01 707 aa13.24□□□□□ -0.29
VPS39-201ENST00000318006 BMP2KQ9NSY1 1161 aaPredicted RBP13.24□□□□□ -0.29
VPS39-201ENST00000318006 ZMYM3Q14202 1370 aa13.24□□□□□ -0.29
VPS39-201ENST00000318006 ZPR1O75312 459 aa13.24□□□□□ -0.29
VPS39-201ENST00000318006 SLC5A1P13866 664 aa13.24□□□□□ -0.29
VPS39-201ENST00000318006 PDE1AP54750 535 aa13.24□□□□□ -0.29
VPS39-201ENST00000318006 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.24□□□□□ -0.29
VPS39-201ENST00000318006 V9GYY5 206 aaPredicted RBP13.24□□□□□ -0.29
VPS39-201ENST00000318006 BIN1O00499 593 aa13.24□□□□□ -0.29
VPS39-201ENST00000318006 NPHP3Q7Z494 1330 aa13.24□□□□□ -0.29
VPS39-201ENST00000318006 ALDH1L1O75891 902 aa13.24□□□□□ -0.29
VPS39-201ENST00000318006 MICALL1Q8N3F8 863 aa13.24□□□□□ -0.29
VPS39-201ENST00000318006 BCCIPQ9P287 314 aaKnown RBP eCLIP13.24□□□□□ -0.29
VPS39-201ENST00000318006 ZNF213O14771 459 aa13.23□□□□□ -0.29
VPS39-201ENST00000318006 ATP8B2P98198 1209 aa13.23□□□□□ -0.29
VPS39-201ENST00000318006 GABPB1Q06547 395 aaPredicted RBP13.23□□□□□ -0.29
VPS39-201ENST00000318006 SPECC1Q5M775 1068 aa13.23□□□□□ -0.29
VPS39-201ENST00000318006 SPECC1LQ69YQ0 1117 aa13.23□□□□□ -0.29
VPS39-201ENST00000318006 GOLIM4O00461 696 aa13.23□□□□□ -0.29
VPS39-201ENST00000318006 HMGB2P26583 209 aaKnown RBP13.23□□□□□ -0.29
VPS39-201ENST00000318006 HSPA4P34932 840 aa13.23□□□□□ -0.29
VPS39-201ENST00000318006 LDHAL6AQ6ZMR3 332 aa13.23□□□□□ -0.29
VPS39-201ENST00000318006 ZHX3Q9H4I2 956 aa13.23□□□□□ -0.29
VPS39-201ENST00000318006 MINDY4BA8MYZ0 360 aa13.23□□□□□ -0.29
VPS39-201ENST00000318006 GCOM1H8Y6P7 765 aaPredicted RBP13.23□□□□□ -0.29
VPS39-201ENST00000318006 MYZAPP0CAP1 466 aa13.23□□□□□ -0.29
VPS39-201ENST00000318006 GIGYF2Q6Y7W6 1299 aaKnown RBP13.23□□□□□ -0.29
VPS39-201ENST00000318006 C10orf67Q8IYJ2 551 aa13.23□□□□□ -0.29
VPS39-201ENST00000318006 CNPY2Q9Y2B0 182 aa13.23□□□□□ -0.29
VPS39-201ENST00000318006 MBD5Q9P267 1494 aa13.23□□□□□ -0.29
VPS39-201ENST00000318006 CTAGE15A4D2H0 777 aa13.23□□□□□ -0.29
VPS39-201ENST00000318006 CTAGE8P0CG41 777 aa13.23□□□□□ -0.29
VPS39-201ENST00000318006 CTAGE6Q86UF2 777 aa13.23□□□□□ -0.29
VPS39-201ENST00000318006 CTAGE4Q8IX94 777 aa13.23□□□□□ -0.29
VPS39-201ENST00000318006 ADGBQ8N7X0 1667 aa13.22□□□□□ -0.29
VPS39-201ENST00000318006 CCDC196A0A1B0GTZ2 297 aa13.22□□□□□ -0.29
VPS39-201ENST00000318006 GUCY1B3Q02153 619 aa13.22□□□□□ -0.29
VPS39-201ENST00000318006 XAGE3Q8WTP9 111 aa13.22□□□□□ -0.29
VPS39-201ENST00000318006 ZBTB40Q9NUA8 1239 aa13.22□□□□□ -0.29
VPS39-201ENST00000318006 MSH6P52701 1360 aa13.22□□□□□ -0.29
VPS39-201ENST00000318006 KSR2Q6VAB6 950 aa13.22□□□□□ -0.29
VPS39-201ENST00000318006 EYA1Q99502 592 aa13.22□□□□□ -0.29
VPS39-201ENST00000318006 LARP6Q9BRS8 491 aaKnown RBP13.22□□□□□ -0.29
VPS39-201ENST00000318006 LIG1P18858 919 aa13.22□□□□□ -0.29
VPS39-201ENST00000318006 HLTFQ14527 1009 aaKnown RBP eCLIP13.22□□□□□ -0.29
VPS39-201ENST00000318006 ALS2CR12Q96Q35 445 aa13.22□□□□□ -0.29
VPS39-201ENST00000318006 TBX22Q9Y458 520 aa13.22□□□□□ -0.29
VPS39-201ENST00000318006 RBM5P52756 815 aaKnown RBP eCLIP13.22□□□□□ -0.29
VPS39-201ENST00000318006 COPS6Q7L5N1 327 aa13.22□□□□□ -0.29
VPS39-201ENST00000318006 CCDC91Q7Z6B0 441 aa13.22□□□□□ -0.29
VPS39-201ENST00000318006 MYRIPQ8NFW9 859 aa13.22□□□□□ -0.29
VPS39-201ENST00000318006 ZSCAN16Q9H4T2 348 aaPredicted RBP13.22□□□□□ -0.29
VPS39-201ENST00000318006 SEPT11Q9NVA2 429 aaKnown RBP13.22□□□□□ -0.29
VPS39-201ENST00000318006 NCKAP5LQ9HCH0 1330 aa13.21□□□□□ -0.29
VPS39-201ENST00000318006 PLCD3Q8N3E9 789 aa13.21□□□□□ -0.29
VPS39-201ENST00000318006 EHBP1Q8NDI1 1231 aa13.21□□□□□ -0.29
VPS39-201ENST00000318006 GRM8O00222 908 aa13.21□□□□□ -0.29
VPS39-201ENST00000318006 EBAG9O00559 213 aa13.21□□□□□ -0.29
VPS39-201ENST00000318006 HSF2BPO75031 334 aa13.21□□□□□ -0.29
VPS39-201ENST00000318006 CKAP4Q07065 602 aaKnown RBP13.21□□□□□ -0.29
VPS39-201ENST00000318006 CACNA2D4Q7Z3S7 1137 aa13.21□□□□□ -0.29
VPS39-201ENST00000318006 DCTPP1Q9H773 170 aa13.21□□□□□ -0.29
VPS39-201ENST00000318006 ANAPC15P60006 121 aa13.21□□□□□ -0.3
VPS39-201ENST00000318006 TUBB4BP68371 445 aa13.21□□□□□ -0.3
VPS39-201ENST00000318006 SLC39A6Q13433 755 aa13.21□□□□□ -0.3
VPS39-201ENST00000318006 MAP3K19Q56UN5 1328 aa13.21□□□□□ -0.3
VPS39-201ENST00000318006 ZCRB1Q8TBF4 217 aaKnown RBP13.21□□□□□ -0.3
VPS39-201ENST00000318006 GOLGA1Q92805 767 aa13.21□□□□□ -0.3
VPS39-201ENST00000318006 ZNF287Q9HBT7 754 aa13.21□□□□□ -0.3
VPS39-201ENST00000318006 HMG20BQ9P0W2 317 aa13.21□□□□□ -0.3
VPS39-201ENST00000318006 TRPM2O94759 1503 aa13.2□□□□□ -0.3
VPS39-201ENST00000318006 PTGS1P23219 599 aa13.2□□□□□ -0.3
VPS39-201ENST00000318006 KRT24Q2M2I5 525 aa13.2□□□□□ -0.3
VPS39-201ENST00000318006 CCDC178Q5BJE1 867 aa13.2□□□□□ -0.3
VPS39-201ENST00000318006 MAATS1Q7Z4T9 603 aa13.2□□□□□ -0.3
VPS39-201ENST00000318006 JARID2Q92833 1246 aaPredicted RBP13.2□□□□□ -0.3
VPS39-201ENST00000318006 UBASH3AP57075 661 aa13.2□□□□□ -0.3
VPS39-201ENST00000318006 ZSCAN29Q8IWY8 852 aaPredicted RBP13.2□□□□□ -0.3
VPS39-201ENST00000318006 CEP112Q8N8E3 955 aa13.2□□□□□ -0.3
VPS39-201ENST00000318006 SNRKQ9NRH2 765 aa13.2□□□□□ -0.3
VPS39-201ENST00000318006 LRRC59Q96AG4 307 aaKnown RBP13.2□□□□□ -0.3
VPS39-201ENST00000318006 PHAXQ9H814 394 aaKnown RBP13.2□□□□□ -0.3
VPS39-201ENST00000318006 KCNA6P17658 529 aa13.2□□□□□ -0.3
VPS39-201ENST00000318006 TTF1Q15361 905 aaPredicted RBP13.2□□□□□ -0.3
VPS39-201ENST00000318006 PIBF1Q8WXW3 757 aa13.2□□□□□ -0.3
VPS39-201ENST00000318006 RNF41Q9H4P4 317 aaPredicted RBP13.2□□□□□ -0.3
VPS39-201ENST00000318006 ERCC6L2Q5T890 1561 aa13.19□□□□□ -0.3
VPS39-201ENST00000318006 A0A1B0GUL7 405 aa13.19□□□□□ -0.3
VPS39-201ENST00000318006 USP5P45974 858 aa13.19□□□□□ -0.3
VPS39-201ENST00000318006 NBPF11Q86T75 865 aa13.19□□□□□ -0.3
VPS39-201ENST00000318006 DMRT2Q9Y5R5 561 aa13.19□□□□□ -0.3
VPS39-201ENST00000318006 SAMD9LQ8IVG5 1584 aa13.19□□□□□ -0.3
VPS39-201ENST00000318006 CEP85Q6P2H3 762 aa13.19□□□□□ -0.3
VPS39-201ENST00000318006 ERO1AQ96HE7 468 aa13.19□□□□□ -0.3
VPS39-201ENST00000318006 DACT1Q9NYF0 836 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms