RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 SUPT20HQ8NEM7 779 aa25.17■■□□□ 1.62
LIME1-201ENST00000309546 LRRC37AA6NMS7 1700 aa25.16■■□□□ 1.62
LIME1-201ENST00000309546 IRS4O14654 1257 aaPredicted RBP25.16■■□□□ 1.62
LIME1-201ENST00000309546 MPNDQ8N594 471 aa25.16■■□□□ 1.62
LIME1-201ENST00000309546 CHMP4AQ9BY43 222 aa25.16■■□□□ 1.62
LIME1-201ENST00000309546 SALL2Q9Y467 1007 aaPredicted RBP25.16■■□□□ 1.62
LIME1-201ENST00000309546 DDX58O95786 925 aaKnown RBP25.15■■□□□ 1.62
LIME1-201ENST00000309546 TRIM28Q13263 835 aaKnown RBP25.15■■□□□ 1.62
LIME1-201ENST00000309546 CLEC11AQ9Y240 323 aa25.15■■□□□ 1.62
LIME1-201ENST00000309546 STK31Q9BXU1 1019 aa25.14■■□□□ 1.62
LIME1-201ENST00000309546 LTBP1Q14766 1721 aa25.14■■□□□ 1.61
LIME1-201ENST00000309546 COL4A1P02462 1669 aa25.13■■□□□ 1.61
LIME1-201ENST00000309546 ADAMTSL1Q8N6G6 1762 aa25.13■■□□□ 1.61
LIME1-201ENST00000309546 LMOD1P29536 600 aaPredicted RBP25.13■■□□□ 1.61
LIME1-201ENST00000309546 SF3B3Q15393 1217 aaKnown RBP25.13■■□□□ 1.61
LIME1-201ENST00000309546 CELF1Q92879 486 aaKnown RBP25.13■■□□□ 1.61
LIME1-201ENST00000309546 RTFDC1Q9BY42 306 aaPredicted RBP25.13■■□□□ 1.61
LIME1-201ENST00000309546 TWISTNBQ3B726 338 aaPredicted RBP25.12■■□□□ 1.61
LIME1-201ENST00000309546 TMC4Q7Z404 712 aa25.12■■□□□ 1.61
LIME1-201ENST00000309546 PNMA8AQ86V59 439 aaPredicted RBP25.12■■□□□ 1.61
LIME1-201ENST00000309546 ZBTB38Q8NAP3 1195 aaPredicted RBP25.12■■□□□ 1.61
LIME1-201ENST00000309546 VPS33BQ9H267 617 aa25.12■■□□□ 1.61
LIME1-201ENST00000309546 DUOX1Q9NRD9 1551 aa25.12■■□□□ 1.61
LIME1-201ENST00000309546 METTL22Q9BUU2 404 aaPredicted RBP25.11■■□□□ 1.61
LIME1-201ENST00000309546 CWC25Q9NXE8 425 aaPredicted RBP25.11■■□□□ 1.61
LIME1-201ENST00000309546 MAP3K2Q9Y2U5 619 aa25.11■■□□□ 1.61
LIME1-201ENST00000309546 IL16Q14005 1332 aa25.11■■□□□ 1.61
LIME1-201ENST00000309546 CCDC191Q8NCU4 936 aa25.1■■□□□ 1.61
LIME1-201ENST00000309546 JARID2Q92833 1246 aaPredicted RBP25.1■■□□□ 1.61
LIME1-201ENST00000309546 ZNRF3Q9ULT6 936 aa25.1■■□□□ 1.61
LIME1-201ENST00000309546 SCNN1DP51172 638 aa25.09■■□□□ 1.61
LIME1-201ENST00000309546 FANCIQ9NVI1 1328 aa25.09■■□□□ 1.61
LIME1-201ENST00000309546 PCCAP05165 728 aaPredicted RBP25.08■■□□□ 1.61
LIME1-201ENST00000309546 HSP90B1P14625 803 aaKnown RBP25.08■■□□□ 1.61
LIME1-201ENST00000309546 KIAA2012Q0VF49 1180 aa25.08■■□□□ 1.61
LIME1-201ENST00000309546 KSR2Q6VAB6 950 aa25.08■■□□□ 1.61
LIME1-201ENST00000309546 FAM9BQ8IZU0 186 aa25.08■■□□□ 1.61
LIME1-201ENST00000309546 JMYQ8N9B5 988 aa25.08■■□□□ 1.61
LIME1-201ENST00000309546 NSFL1CQ9UNZ2 370 aaKnown RBP25.08■■□□□ 1.61
LIME1-201ENST00000309546 PASKQ96RG2 1323 aa25.08■■□□□ 1.6
LIME1-201ENST00000309546 PI4KAP2A4QPH2 592 aa25.07■■□□□ 1.6
LIME1-201ENST00000309546 EPS15P42566 896 aa25.07■■□□□ 1.6
LIME1-201ENST00000309546 NCBP3Q53F19 620 aaKnown RBP25.07■■□□□ 1.6
LIME1-201ENST00000309546 PI4KAP1Q8N8J0 262 aa25.07■■□□□ 1.6
LIME1-201ENST00000309546 CREBZFQ9NS37 354 aa25.07■■□□□ 1.6
LIME1-201ENST00000309546 CXCL9Q07325 125 aa25.06■■□□□ 1.6
LIME1-201ENST00000309546 MAP1SQ66K74 1059 aaPredicted RBP25.06■■□□□ 1.6
LIME1-201ENST00000309546 CCDC85AQ96PX6 553 aaPredicted RBP25.06■■□□□ 1.6
LIME1-201ENST00000309546 SEC31BQ9NQW1 1179 aa25.06■■□□□ 1.6
LIME1-201ENST00000309546 PDE8AO60658 829 aa25.05■■□□□ 1.6
LIME1-201ENST00000309546 SLC4A2P04920 1241 aa25.05■■□□□ 1.6
LIME1-201ENST00000309546 NEXNQ0ZGT2 675 aa25.05■■□□□ 1.6
LIME1-201ENST00000309546 G2E3Q7L622 706 aa25.05■■□□□ 1.6
LIME1-201ENST00000309546 MKRN1Q9UHC7 482 aaKnown RBP25.05■■□□□ 1.6
LIME1-201ENST00000309546 MYH3P11055 1940 aa25.04■■□□□ 1.6
LIME1-201ENST00000309546 RAD17O75943 681 aa25.04■■□□□ 1.6
LIME1-201ENST00000309546 ITGBL1O95965 494 aaPredicted RBP25.04■■□□□ 1.6
LIME1-201ENST00000309546 RPS8P62241 208 aaKnown RBP25.04■■□□□ 1.6
LIME1-201ENST00000309546 GPSM2P81274 684 aa25.04■■□□□ 1.6
LIME1-201ENST00000309546 CCDC152Q4G0S7 254 aa25.04■■□□□ 1.6
LIME1-201ENST00000309546 CIAPIN1Q6FI81 312 aa25.04■■□□□ 1.6
LIME1-201ENST00000309546 WDR63Q8IWG1 891 aa25.04■■□□□ 1.6
LIME1-201ENST00000309546 CNTROBQ8N137 903 aa25.04■■□□□ 1.6
LIME1-201ENST00000309546 C6orf229H3BNL8 230 aa25.03■■□□□ 1.6
LIME1-201ENST00000309546 IGKV5-2P06315 115 aa25.03■■□□□ 1.6
LIME1-201ENST00000309546 CACNA1FO60840 1977 aa25.03■■□□□ 1.6
LIME1-201ENST00000309546 RIMBP2O15034 1052 aa25.02■■□□□ 1.6
LIME1-201ENST00000309546 WASHC4Q2M389 1173 aa25.02■■□□□ 1.6
LIME1-201ENST00000309546 BCL2L13Q9BXK5 485 aa25.02■■□□□ 1.6
LIME1-201ENST00000309546 GPRC5DQ9NZD1 345 aa25.02■■□□□ 1.6
LIME1-201ENST00000309546 SPEF2Q9C093 1822 aa25.02■■□□□ 1.6
LIME1-201ENST00000309546 GMPSP49915 693 aaPredicted RBP25.01■■□□□ 1.59
LIME1-201ENST00000309546 CWF19L2Q2TBE0 894 aaKnown RBP25.01■■□□□ 1.59
LIME1-201ENST00000309546 POLLQ9UGP5 575 aa25.01■■□□□ 1.59
LIME1-201ENST00000309546 CDHR2Q9BYE9 1310 aa25.01■■□□□ 1.59
LIME1-201ENST00000309546 TMEM88BA6NKF7 163 aa25■■□□□ 1.59
LIME1-201ENST00000309546 YDJCA8MPS7 323 aa25■■□□□ 1.59
LIME1-201ENST00000309546 EXOSC9Q06265 439 aaKnown RBP25■■□□□ 1.59
LIME1-201ENST00000309546 FLIIQ13045 1269 aa25■■□□□ 1.59
LIME1-201ENST00000309546 TNIP1Q15025 636 aa25■■□□□ 1.59
LIME1-201ENST00000309546 USP50Q70EL3 339 aaPredicted RBP25■■□□□ 1.59
LIME1-201ENST00000309546 GPR101Q96P66 508 aaPredicted RBP25■■□□□ 1.59
LIME1-201ENST00000309546 DBNDD1Q9H9R9 158 aa25■■□□□ 1.59
LIME1-201ENST00000309546 NEURL1BA8MQ27 555 aa24.99■■□□□ 1.59
LIME1-201ENST00000309546 FKBP5Q13451 457 aaPredicted RBP24.99■■□□□ 1.59
LIME1-201ENST00000309546 EYA3Q99504 573 aa24.99■■□□□ 1.59
LIME1-201ENST00000309546 ADARB2Q9NS39 739 aaKnown RBP24.99■■□□□ 1.59
LIME1-201ENST00000309546 CTSWP56202 376 aa24.98■■□□□ 1.59
LIME1-201ENST00000309546 TBC1D16Q8TBP0 767 aa24.98■■□□□ 1.59
LIME1-201ENST00000309546 ANKIB1Q9P2G1 1089 aa24.98■■□□□ 1.59
LIME1-201ENST00000309546 CNTNAP1P78357 1384 aa24.97■■□□□ 1.59
LIME1-201ENST00000309546 VAMP4O75379 141 aa24.97■■□□□ 1.59
LIME1-201ENST00000309546 ANKRD18AQ8IVF6 992 aa24.97■■□□□ 1.59
LIME1-201ENST00000309546 SPINK5Q9NQ38 1064 aaPredicted RBP24.97■■□□□ 1.59
LIME1-201ENST00000309546 UFL1O94874 794 aa24.96■■□□□ 1.59
LIME1-201ENST00000309546 DOK7Q18PE1 504 aa24.96■■□□□ 1.59
LIME1-201ENST00000309546 ECE2O60344 883 aa24.95■■□□□ 1.58
LIME1-201ENST00000309546 HSPA1AP0DMV8 641 aaKnown RBP24.95■■□□□ 1.58
LIME1-201ENST00000309546 HSPA1BP0DMV9 641 aaKnown RBP24.95■■□□□ 1.58
LIME1-201ENST00000309546 UBE3BQ7Z3V4 1068 aa24.95■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms