RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 PDE4BQ07343 736 aa9.11□□□□□ -0.95
USP3-201ENST00000268049 SLC4A8Q2Y0W8 1093 aa9.11□□□□□ -0.95
USP3-201ENST00000268049 GRIPAP1Q4V328 841 aa9.11□□□□□ -0.95
USP3-201ENST00000268049 ZSCAN30Q86W11 494 aa9.11□□□□□ -0.95
USP3-201ENST00000268049 NFATC2IPQ8NCF5 419 aa9.11□□□□□ -0.95
USP3-201ENST00000268049 CCDC12Q8WUD4 166 aaPredicted RBP9.11□□□□□ -0.95
USP3-201ENST00000268049 WASF1Q92558 559 aa9.11□□□□□ -0.95
USP3-201ENST00000268049 NSFL1CQ9UNZ2 370 aaKnown RBP9.11□□□□□ -0.95
USP3-201ENST00000268049 LMTK2Q8IWU2 1503 aa9.11□□□□□ -0.95
USP3-201ENST00000268049 KIDINS220Q9ULH0 1771 aa9.11□□□□□ -0.95
USP3-201ENST00000268049 ECE1P42892 770 aa9.11□□□□□ -0.95
USP3-201ENST00000268049 AXDND1Q5T1B0 1012 aaPredicted RBP9.11□□□□□ -0.95
USP3-201ENST00000268049 CERS3Q8IU89 383 aa9.11□□□□□ -0.95
USP3-201ENST00000268049 CCDC97Q96F63 343 aaPredicted RBP9.11□□□□□ -0.95
USP3-201ENST00000268049 NOB1Q9ULX3 412 aaKnown RBP9.11□□□□□ -0.95
USP3-201ENST00000268049 ATP5J2-PTCD1G3V325 749 aa9.11□□□□□ -0.95
USP3-201ENST00000268049 PIP4K2AP48426 406 aaPredicted RBP9.11□□□□□ -0.95
USP3-201ENST00000268049 SASS6Q6UVJ0 657 aa9.11□□□□□ -0.95
USP3-201ENST00000268049 GGA1Q9UJY5 639 aa9.11□□□□□ -0.95
USP3-201ENST00000268049 THRAP3Q9Y2W1 955 aaKnown RBP9.11□□□□□ -0.95
USP3-201ENST00000268049 PLA2R1Q13018 1463 aa9.1□□□□□ -0.95
USP3-201ENST00000268049 SYNMO15061 1565 aa9.1□□□□□ -0.95
USP3-201ENST00000268049 CEP152O94986 1710 aa9.1□□□□□ -0.95
USP3-201ENST00000268049 SLC39A6Q13433 755 aa9.1□□□□□ -0.95
USP3-201ENST00000268049 SPOUT1Q5T280 376 aaKnown RBP9.1□□□□□ -0.95
USP3-201ENST00000268049 CCDC85AQ96PX6 553 aaPredicted RBP9.1□□□□□ -0.95
USP3-201ENST00000268049 ZBTB3Q9H5J0 574 aa9.1□□□□□ -0.95
USP3-201ENST00000268049 ADGRL3Q9HAR2 1447 aa9.1□□□□□ -0.95
USP3-201ENST00000268049 UNC13BO14795 1591 aa9.1□□□□□ -0.95
USP3-201ENST00000268049 BAG4O95429 457 aaKnown RBP9.1□□□□□ -0.95
USP3-201ENST00000268049 CCNA1P78396 465 aa9.1□□□□□ -0.95
USP3-201ENST00000268049 KIAA0232Q92628 1395 aa9.1□□□□□ -0.95
USP3-201ENST00000268049 SKIDA1Q1XH10 827 aa9.1□□□□□ -0.95
USP3-201ENST00000268049 MTHFSDQ2M296 383 aaKnown RBP9.1□□□□□ -0.95
USP3-201ENST00000268049 CAVIN1Q6NZI2 390 aaKnown RBP9.1□□□□□ -0.95
USP3-201ENST00000268049 INCENPQ9NQS7 918 aa9.1□□□□□ -0.95
USP3-201ENST00000268049 IPO4Q8TEX9 1081 aaKnown RBP9.1□□□□□ -0.95
USP3-201ENST00000268049 RBM25P49756 843 aaKnown RBP9.09□□□□□ -0.95
USP3-201ENST00000268049 IQCA1Q86XH1 822 aa9.09□□□□□ -0.95
USP3-201ENST00000268049 PANK1Q8TE04 598 aa9.09□□□□□ -0.95
USP3-201ENST00000268049 SBNO2Q9Y2G9 1366 aa9.09□□□□□ -0.95
USP3-201ENST00000268049 GOLGA6L7A0A1B0GV03 622 aa9.09□□□□□ -0.95
USP3-201ENST00000268049 GIGYF1O75420 1035 aaPredicted RBP9.09□□□□□ -0.95
USP3-201ENST00000268049 HSPA1LP34931 641 aa9.09□□□□□ -0.95
USP3-201ENST00000268049 CCDC184Q52MB2 194 aa9.09□□□□□ -0.95
USP3-201ENST00000268049 TSPY26PQ9H489 355 aa9.09□□□□□ -0.95
USP3-201ENST00000268049 CROCC2H7BZ55 1655 aa9.09□□□□□ -0.95
USP3-201ENST00000268049 SPATA31A3Q5VYP0 1347 aa9.09□□□□□ -0.95
USP3-201ENST00000268049 EIF3JO75822 258 aaKnown RBP9.09□□□□□ -0.95
USP3-201ENST00000268049 PRIM1P49642 420 aaKnown RBP9.09□□□□□ -0.95
USP3-201ENST00000268049 GTF2A1P52655 376 aaPredicted RBP9.09□□□□□ -0.95
USP3-201ENST00000268049 DLGAP5Q15398 846 aa9.09□□□□□ -0.95
USP3-201ENST00000268049 SUPT20HL1Q3ZLR7 823 aa9.09□□□□□ -0.95
USP3-201ENST00000268049 FAM200AQ8TCP9 573 aa9.09□□□□□ -0.95
USP3-201ENST00000268049 RAB34Q9BZG1 259 aa9.09□□□□□ -0.95
USP3-201ENST00000268049 RIMBP2O15034 1052 aa9.08□□□□□ -0.96
USP3-201ENST00000268049 TNNT1P13805 278 aa9.08□□□□□ -0.96
USP3-201ENST00000268049 MBD3O95983 291 aa9.08□□□□□ -0.96
USP3-201ENST00000268049 TMC4Q7Z404 712 aa9.08□□□□□ -0.96
USP3-201ENST00000268049 NUP133Q8WUM0 1156 aa9.08□□□□□ -0.96
USP3-201ENST00000268049 TIGD1Q96MW7 591 aa9.08□□□□□ -0.96
USP3-201ENST00000268049 TRERF1Q96PN7 1200 aa9.08□□□□□ -0.96
USP3-201ENST00000268049 ANKARQ7Z5J8 1434 aa9.08□□□□□ -0.96
USP3-201ENST00000268049 CCP110O43303 1012 aa9.08□□□□□ -0.96
USP3-201ENST00000268049 MSL1Q68DK7 614 aa9.08□□□□□ -0.96
USP3-201ENST00000268049 ZBTB33Q86T24 672 aa9.08□□□□□ -0.96
USP3-201ENST00000268049 BICD2Q8TD16 824 aa9.08□□□□□ -0.96
USP3-201ENST00000268049 SIL1Q9H173 461 aa9.08□□□□□ -0.96
USP3-201ENST00000268049 PIM2Q9P1W9 311 aa9.08□□□□□ -0.96
USP3-201ENST00000268049 LDHAL6AQ6ZMR3 332 aa9.08□□□□□ -0.96
USP3-201ENST00000268049 SETD1BQ9UPS6 1966 aaKnown RBP9.08□□□□□ -0.96
USP3-201ENST00000268049 F8W031 263 aaPredicted RBP9.07□□□□□ -0.96
USP3-201ENST00000268049 ZRSR2Q15696 482 aaKnown RBP9.07□□□□□ -0.96
USP3-201ENST00000268049 MPNDQ8N594 471 aa9.07□□□□□ -0.96
USP3-201ENST00000268049 RNF216Q9NWF9 866 aaPredicted RBP9.07□□□□□ -0.96
USP3-201ENST00000268049 PRR36Q9H6K5 1346 aa9.07□□□□□ -0.96
USP3-201ENST00000268049 LETM1O95202 739 aaPredicted RBP9.07□□□□□ -0.96
USP3-201ENST00000268049 OSBPP22059 807 aa9.07□□□□□ -0.96
USP3-201ENST00000268049 HACE1Q8IYU2 909 aa9.07□□□□□ -0.96
USP3-201ENST00000268049 CTCFLQ8NI51 663 aaPredicted RBP9.07□□□□□ -0.96
USP3-201ENST00000268049 LBHD1Q9BQE6 289 aaPredicted RBP9.07□□□□□ -0.96
USP3-201ENST00000268049 C22orf23Q9BZE7 217 aa9.07□□□□□ -0.96
USP3-201ENST00000268049 CLTCL1P53675 1640 aa9.07□□□□□ -0.96
USP3-201ENST00000268049 CEP170BQ9Y4F5 1589 aaPredicted RBP9.07□□□□□ -0.96
USP3-201ENST00000268049 RNMTO43148 476 aaKnown RBP9.07□□□□□ -0.96
USP3-201ENST00000268049 YY1P25490 414 aa9.07□□□□□ -0.96
USP3-201ENST00000268049 CCDC93Q567U6 631 aa9.07□□□□□ -0.96
USP3-201ENST00000268049 ZHX3Q9H4I2 956 aa9.07□□□□□ -0.96
USP3-201ENST00000268049 NOC2LQ9Y3T9 749 aaKnown RBP9.07□□□□□ -0.96
USP3-201ENST00000268049 MAP3K5Q99683 1374 aa9.07□□□□□ -0.96
USP3-201ENST00000268049 MADDQ8WXG6 1647 aa9.07□□□□□ -0.96
USP3-201ENST00000268049 UFL1O94874 794 aa9.07□□□□□ -0.96
USP3-201ENST00000268049 INTS3Q68E01 1043 aaKnown RBP9.07□□□□□ -0.96
USP3-201ENST00000268049 TRIM5Q9C035 493 aa9.07□□□□□ -0.96
USP3-201ENST00000268049 CENPHQ9H3R5 247 aa9.07□□□□□ -0.96
USP3-201ENST00000268049 LRRIQ1Q96JM4 1722 aa9.07□□□□□ -0.96
USP3-201ENST00000268049 CKAP2LQ8IYA6 745 aa9.07□□□□□ -0.96
USP3-201ENST00000268049 CARD10Q9BWT7 1032 aa9.07□□□□□ -0.96
USP3-201ENST00000268049 NAPBQ9H115 298 aa9.07□□□□□ -0.96
USP3-201ENST00000268049 ARHGEF10LQ9HCE6 1279 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms