RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 RBM25P49756 843 aaKnown RBP20.11■□□□□ 0.81
USP4-201ENST00000265560 CTSWP56202 376 aa20.11■□□□□ 0.81
USP4-201ENST00000265560 GPATCH3Q96I76 525 aa20.11■□□□□ 0.81
USP4-201ENST00000265560 DNAJC2Q99543 621 aaKnown RBP20.11■□□□□ 0.81
USP4-201ENST00000265560 CD2BP2O95400 341 aaKnown RBP20.11■□□□□ 0.81
USP4-201ENST00000265560 NBR1Q14596 966 aa20.11■□□□□ 0.81
USP4-201ENST00000265560 CNTROBQ8N137 903 aa20.11■□□□□ 0.81
USP4-201ENST00000265560 HELBQ8NG08 1087 aaPredicted RBP20.11■□□□□ 0.81
USP4-201ENST00000265560 SEC31BQ9NQW1 1179 aa20.11■□□□□ 0.81
USP4-201ENST00000265560 UTP14AQ9BVJ6 771 aaKnown RBP20.1■□□□□ 0.81
USP4-201ENST00000265560 TTC41PQ6P2S7 1318 aa20.1■□□□□ 0.81
USP4-201ENST00000265560 SNAP23O00161 211 aa20.1■□□□□ 0.81
USP4-201ENST00000265560 LDHAL6AQ6ZMR3 332 aa20.1■□□□□ 0.81
USP4-201ENST00000265560 AK9Q5TCS8 1911 aa20.09■□□□□ 0.81
USP4-201ENST00000265560 CSF1RP07333 972 aa20.09■□□□□ 0.81
USP4-201ENST00000265560 TBC1D9BQ66K14 1250 aa20.09■□□□□ 0.81
USP4-201ENST00000265560 FAM196AQ6ZSG2 479 aa20.09■□□□□ 0.81
USP4-201ENST00000265560 TUBGCP6Q96RT7 1819 aa20.09■□□□□ 0.81
USP4-201ENST00000265560 AOX1Q06278 1338 aa20.09■□□□□ 0.81
USP4-201ENST00000265560 SH3TC1Q8TE82 1336 aa20.09■□□□□ 0.81
USP4-201ENST00000265560 A0A1B0GUL7 405 aa20.08■□□□□ 0.8
USP4-201ENST00000265560 ADORA1P30542 326 aa20.08■□□□□ 0.8
USP4-201ENST00000265560 IL15P40933 162 aaPredicted RBP20.08■□□□□ 0.8
USP4-201ENST00000265560 SLFNL1Q499Z3 407 aa20.08■□□□□ 0.8
USP4-201ENST00000265560 BCL2L12Q9HB09 334 aa20.08■□□□□ 0.8
USP4-201ENST00000265560 CNNM1Q9NRU3 951 aa20.08■□□□□ 0.8
USP4-201ENST00000265560 PDE8AO60658 829 aa20.07■□□□□ 0.8
USP4-201ENST00000265560 ARHGEF1Q92888 912 aaKnown RBP20.07■□□□□ 0.8
USP4-201ENST00000265560 CEP126Q9P2H0 1117 aa20.07■□□□□ 0.8
USP4-201ENST00000265560 USP42Q9H9J4 1324 aaKnown RBP20.07■□□□□ 0.8
USP4-201ENST00000265560 BRWD3Q6RI45 1802 aa20.07■□□□□ 0.8
USP4-201ENST00000265560 C3orf67Q6ZVT6 689 aa20.07■□□□□ 0.8
USP4-201ENST00000265560 FAM227BQ96M60 508 aa20.07■□□□□ 0.8
USP4-201ENST00000265560 FOXD4L1Q9NU39 408 aa20.07■□□□□ 0.8
USP4-201ENST00000265560 RTCBQ9Y3I0 505 aaKnown RBP20.07■□□□□ 0.8
USP4-201ENST00000265560 SBF2Q86WG5 1849 aa20.07■□□□□ 0.8
USP4-201ENST00000265560 ERFEQ4G0M1 354 aa20.07■□□□□ 0.8
USP4-201ENST00000265560 BCL11BQ9C0K0 894 aaPredicted RBP20.07■□□□□ 0.8
USP4-201ENST00000265560 SNRKQ9NRH2 765 aa20.07■□□□□ 0.8
USP4-201ENST00000265560 REC8O95072 547 aa20.06■□□□□ 0.8
USP4-201ENST00000265560 GTF2E1P29083 439 aaPredicted RBP20.06■□□□□ 0.8
USP4-201ENST00000265560 BECN1Q14457 450 aa20.06■□□□□ 0.8
USP4-201ENST00000265560 DDX46Q7L014 1031 aaKnown RBP20.06■□□□□ 0.8
USP4-201ENST00000265560 PLA2G12BQ9BX93 195 aa20.06■□□□□ 0.8
USP4-201ENST00000265560 PALD1Q9ULE6 856 aa20.06■□□□□ 0.8
USP4-201ENST00000265560 CDHR2Q9BYE9 1310 aa20.06■□□□□ 0.8
USP4-201ENST00000265560 ANKRD36CQ5JPF3 1778 aa20.06■□□□□ 0.8
USP4-201ENST00000265560 ANKRD18BA2A2Z9 1011 aa20.06■□□□□ 0.8
USP4-201ENST00000265560 FSD1Q9BTV5 496 aa20.06■□□□□ 0.8
USP4-201ENST00000265560 COL5A3P25940 1745 aaPredicted RBP20.06■□□□□ 0.8
USP4-201ENST00000265560 ZPR1O75312 459 aa20.05■□□□□ 0.8
USP4-201ENST00000265560 RPS6KA4O75676 772 aa20.05■□□□□ 0.8
USP4-201ENST00000265560 NTSR2O95665 410 aa20.05■□□□□ 0.8
USP4-201ENST00000265560 METTL24Q5JXM2 366 aa20.05■□□□□ 0.8
USP4-201ENST00000265560 DIAPH3Q9NSV4 1193 aa20.05■□□□□ 0.8
USP4-201ENST00000265560 ZNF652Q9Y2D9 606 aa20.05■□□□□ 0.8
USP4-201ENST00000265560 CNTNAP4Q9C0A0 1308 aa20.04■□□□□ 0.8
USP4-201ENST00000265560 TAF5LO75529 589 aa20.04■□□□□ 0.8
USP4-201ENST00000265560 AK7Q96M32 723 aa20.04■□□□□ 0.8
USP4-201ENST00000265560 NHSQ6T4R5 1651 aa20.03■□□□□ 0.8
USP4-201ENST00000265560 GORABQ5T7V8 394 aa20.03■□□□□ 0.8
USP4-201ENST00000265560 PI16Q6UXB8 463 aa20.03■□□□□ 0.8
USP4-201ENST00000265560 EVI5LQ96CN4 794 aa20.02■□□□□ 0.8
USP4-201ENST00000265560 RIPOR2Q9Y4F9 1068 aa20.02■□□□□ 0.8
USP4-201ENST00000265560 TAF1P21675 1872 aa20.02■□□□□ 0.8
USP4-201ENST00000265560 RFC4P35249 363 aa20.02■□□□□ 0.8
USP4-201ENST00000265560 WTIPA6NIX2 430 aaPredicted RBP20.02■□□□□ 0.79
USP4-201ENST00000265560 GOLIM4O00461 696 aa20.02■□□□□ 0.79
USP4-201ENST00000265560 RBM6P78332 1123 aaKnown RBP20.02■□□□□ 0.79
USP4-201ENST00000265560 NMIQ13287 307 aaPredicted RBP20.02■□□□□ 0.79
USP4-201ENST00000265560 SGSM2O43147 1006 aa20.01■□□□□ 0.79
USP4-201ENST00000265560 FKBP4Q02790 459 aaKnown RBP eCLIP20.01■□□□□ 0.79
USP4-201ENST00000265560 PARP10Q53GL7 1025 aa20.01■□□□□ 0.79
USP4-201ENST00000265560 XAGE2Q96GT9 111 aa20.01■□□□□ 0.79
USP4-201ENST00000265560 ANTXR1Q9H6X2 564 aa20.01■□□□□ 0.79
USP4-201ENST00000265560 NARFQ9UHQ1 456 aa20.01■□□□□ 0.79
USP4-201ENST00000265560 MYH3P11055 1940 aa20.01■□□□□ 0.79
USP4-201ENST00000265560 ATP5JP18859 108 aa20.01■□□□□ 0.79
USP4-201ENST00000265560 SEC62Q99442 399 aaKnown RBP20.01■□□□□ 0.79
USP4-201ENST00000265560 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20■□□□□ 0.79
USP4-201ENST00000265560 A0A0D9SFI3 127 aa20■□□□□ 0.79
USP4-201ENST00000265560 NPHP1O15259 732 aa20■□□□□ 0.79
USP4-201ENST00000265560 TRAPPC3LQ5T215 181 aa20■□□□□ 0.79
USP4-201ENST00000265560 NOL8Q76FK4 1167 aaKnown RBP20■□□□□ 0.79
USP4-201ENST00000265560 SETDB2Q96T68 719 aa20■□□□□ 0.79
USP4-201ENST00000265560 CIAO1O76071 339 aa20■□□□□ 0.79
USP4-201ENST00000265560 PTH1RQ03431 593 aa20■□□□□ 0.79
USP4-201ENST00000265560 SCARF1Q14162 830 aa20■□□□□ 0.79
USP4-201ENST00000265560 HSCBQ8IWL3 235 aa20■□□□□ 0.79
USP4-201ENST00000265560 PROM2Q8N271 834 aa20■□□□□ 0.79
USP4-201ENST00000265560 RC3H1Q5TC82 1133 aaKnown RBP20■□□□□ 0.79
USP4-201ENST00000265560 ZNF772Q68DY9 489 aaPredicted RBP19.99■□□□□ 0.79
USP4-201ENST00000265560 CLEC4GQ6UXB4 293 aa19.99■□□□□ 0.79
USP4-201ENST00000265560 NBPF5PQ86XG9 351 aaPredicted RBP19.99■□□□□ 0.79
USP4-201ENST00000265560 MPHOSPH8Q99549 860 aa19.99■□□□□ 0.79
USP4-201ENST00000265560 UPF3BQ9BZI7 483 aaKnown RBP19.99■□□□□ 0.79
USP4-201ENST00000265560 IFIT1P09914 478 aaKnown RBP19.98■□□□□ 0.79
USP4-201ENST00000265560 ATP2B3Q16720 1220 aa19.98■□□□□ 0.79
USP4-201ENST00000265560 CCDC129Q6ZRS4 1044 aa19.98■□□□□ 0.79
USP4-201ENST00000265560 SLC51AQ86UW1 340 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms