RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 OR1E2P47887 323 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 RAB11AP62491 216 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 CSNK2A1P68400 391 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-220ENST00000641603 MAP2K5Q13163 448 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 FAM74A3Q4VXF1 159 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF628Q5EBL2 1059 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 C1orf220Q5T0J3 134 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 KCTD11Q693B1 232 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 RNF180Q86T96 592 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 CSNK2A3Q8NEV1 391 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 OR6N1Q8NGY5 312 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 CASD1Q96PB1 797 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 CXXC1Q9P0U4 656 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-220ENST00000641603 FBXL2Q9UKC9 423 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 ZDHHC8Q9ULC8 765 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 N4BP2Q86UW6 1770 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-220ENST00000641603 ANHXE9PGG2 379 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 RNASEK-C17orf49H0YIS7 233 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 H0YIV9 168 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 SH3BGRLO75368 114 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 H2BFMP0C1H6 154 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 OR5H8P0DN80 308 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 OR10J1P30954 320 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 TMEM201Q5SNT2 666 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 WDR73Q6P4I2 378 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 OR4K14Q8NGD5 310 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 GPR20Q99678 358 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 SPACA1Q9HBV2 294 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 TMEM150BA6NC51 233 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 TERTO14746 1132 aaKnown RBP4.36□□□□□ -1.71
SCN1A-220ENST00000641603 SORBS2O94875 1100 aaKnown RBP4.36□□□□□ -1.71
SCN1A-220ENST00000641603 AMD1P17707 334 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 NT5EP21589 574 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 PPP1R8Q12972 351 aaKnown RBP4.36□□□□□ -1.71
SCN1A-220ENST00000641603 SYT14P1Q58G82 188 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 TRIM61Q5EBN2 209 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 SPIN3Q5JUX0 258 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 PLBD1Q6P4A8 553 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 RD3Q7Z3Z2 195 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 LYG2Q86SG7 212 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 PIM3Q86V86 326 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 HSD17B11Q8NBQ5 300 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 OR2G2Q8NGZ5 317 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 CRYGNQ8WXF5 182 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 NKD1Q969G9 470 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 FIZ1Q96SL8 496 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 CABLES2Q9BTV7 478 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 MIXL1Q9H2W2 232 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 IL20RAQ9UHF4 553 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 MYH10P35580 1976 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 LOC390937A0A1W2PQ73 354 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 SLC31A2O15432 143 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 POMCP01189 267 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 CHRM4P08173 479 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 ITPKBP27987 946 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 ACVR1BP36896 505 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 HNRNPA3P51991 378 aaKnown RBP4.36□□□□□ -1.71
SCN1A-220ENST00000641603 MBTPS1Q14703 1052 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 HLXQ14774 488 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-220ENST00000641603 ELOCQ15369 112 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 LCTLQ6UWM7 567 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 OR13C4Q8NGS5 318 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 TSLPQ969D9 159 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 MIB2Q96AX9 1013 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 ORAI1Q96D31 301 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 PCED1BQ96HM7 432 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 OR5M11Q96RB7 305 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 ALX4Q9H161 411 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-220ENST00000641603 ZNF286AQ9HBT8 521 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 DLG5Q8TDM6 1919 aa4.36□□□□□ -1.71
SCN1A-220ENST00000641603 YJEFN3A6XGL0 299 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 KCNAB3O43448 404 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 NFATC1O95644 943 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 SDC1P18827 310 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 SNRPEP62304 92 aaKnown RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 HTRA3P83110 453 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 PHYHD1Q5SRE7 291 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 DLEU7Q6UYE1 221 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 WDR5BQ86VZ2 330 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 SNX11Q9Y5W9 270 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 FAM74A7A6NL05 159 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 VEGFDO43915 354 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 KCNK5O95279 499 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 PIGAP37287 484 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 XCR1P46094 333 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 SAPCD1Q5SSQ6 148 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 CYB5R2Q6BCY4 276 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 LRRC25Q8N386 305 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 OR9Q2Q8NGE9 314 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 KCMF1Q9P0J7 381 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 AGRPO00253 132 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 MSTNO14793 375 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 GSTP1P09211 210 aaKnown RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 ABCD3P28288 659 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 TBPL2Q6SJ96 375 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 OR52I1Q8NGK6 324 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 C2CD4CQ8TF44 421 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 NUDCD2Q8WVJ2 157 aa4.35□□□□□ -1.71
SCN1A-220ENST00000641603 EMG1Q92979 244 aaKnown RBP4.35□□□□□ -1.71
SCN1A-220ENST00000641603 NEURL3Q96EH8 262 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms